Wall clock time and date at job start Tue Mar 31 2020 22:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50699 * 120.00618 * 2 1 4 4 N 1.46894 * 109.47725 * 124.99720 * 3 2 1 5 5 C 1.46899 * 110.99776 * 296.13644 * 4 3 2 6 6 C 1.50704 * 109.47035 * 293.62637 * 5 4 3 7 7 H 1.08000 * 119.99513 * 5.38837 * 6 5 4 8 8 C 1.37876 * 120.00114 * 185.38545 * 6 5 4 9 9 N 1.31520 * 119.99816 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00105 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47334 * 89.99831 * 10 8 6 12 12 H 1.48504 * 109.47265 * 210.00067 * 10 8 6 13 13 H 1.48503 * 109.46981 * 329.99375 * 10 8 6 14 14 C 1.46897 * 111.00473 * 172.17879 * 4 3 2 15 15 H 1.09004 * 109.32865 * 76.91448 * 14 4 3 16 16 C 1.52890 * 109.50265 * 317.31130 * 14 4 3 17 17 C 1.53341 * 108.58466 * 191.22524 * 16 14 4 18 18 C 1.52928 * 108.67051 * 67.34955 * 17 16 14 19 19 N 1.45748 * 110.48900 * 309.24494 * 18 17 16 20 20 C 1.39540 * 117.94864 * 199.07923 * 19 18 17 21 21 C 1.39105 * 119.92388 * 111.09650 * 20 19 18 22 22 C 1.37689 * 120.07951 * 179.72308 * 21 20 19 23 23 C 1.39773 * 119.92067 * 0.57282 * 22 21 20 24 24 C 1.43206 * 120.08039 * 179.68290 * 23 22 21 25 25 N 9.61019 * 156.54944 * 286.24849 * 4 1 2 26 26 C 1.39769 * 119.83891 * 359.69740 * 23 22 21 27 27 C 1.37697 * 119.92066 * 0.02562 * 26 23 22 28 28 C 1.33354 * 124.10531 * 19.09350 * 19 18 17 29 29 O 1.21279 * 118.24549 * 177.75494 * 28 19 18 30 30 H 1.08000 * 120.00767 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.99972 * 0.02562 * 1 2 3 32 32 H 1.08005 * 119.99768 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.46634 * 4.98910 * 3 2 1 34 34 H 1.09004 * 109.46616 * 244.99900 * 3 2 1 35 35 H 1.08998 * 109.47701 * 53.63013 * 5 4 3 36 36 H 1.09000 * 109.47290 * 173.63137 * 5 4 3 37 37 H 0.97000 * 119.99793 * 179.97438 * 9 8 6 38 38 H 1.09001 * 109.74646 * 71.35672 * 16 14 4 39 39 H 1.08991 * 109.47358 * 310.94371 * 16 14 4 40 40 H 1.08995 * 109.60740 * 307.59554 * 17 16 14 41 41 H 1.09005 * 109.73784 * 187.18104 * 17 16 14 42 42 H 1.09006 * 109.29669 * 188.92988 * 18 17 16 43 43 H 1.09000 * 109.13463 * 69.45189 * 18 17 16 44 44 H 1.07999 * 119.95769 * 359.97438 * 21 20 19 45 45 H 1.08006 * 120.04239 * 180.27317 * 22 21 20 46 46 H 1.08000 * 120.03986 * 180.02562 * 26 23 22 47 47 H 1.08000 * 119.95746 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9963 1.3319 1.1345 5 6 2.2724 1.2950 2.4121 6 6 1.4805 2.5664 2.5778 7 1 1.4419 3.2870 1.7743 8 6 0.8053 2.8097 3.7550 9 7 0.1138 3.9191 3.8993 10 14 0.8725 1.5636 5.1450 11 1 2.0234 1.8722 6.0312 12 1 -0.3871 1.6279 5.9289 13 1 1.0346 0.1999 4.5798 14 6 3.8786 2.5043 1.0630 15 1 3.3282 3.3899 1.3805 16 6 4.3550 2.6975 -0.3769 17 6 5.4821 3.7373 -0.3834 18 6 6.6964 3.1474 0.3351 19 7 6.3094 2.6090 1.6330 20 6 7.3120 2.4063 2.5822 21 6 7.3594 3.2021 3.7222 22 6 8.3438 3.0012 4.6636 23 6 9.3034 2.0040 4.4671 24 6 10.3328 1.7966 5.4408 25 7 11.1494 1.6321 6.2131 26 6 9.2559 1.2100 3.3178 27 6 8.2651 1.4129 2.3833 28 6 5.0574 2.2976 1.9702 29 8 4.8607 1.8173 3.0663 30 1 -0.5401 -0.9352 0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8499 -0.9354 0.0004 33 1 1.3586 2.1316 0.0894 34 1 2.6214 1.4024 -0.9314 35 1 1.5949 0.4412 2.4214 36 1 2.9855 1.2019 3.2313 37 1 -0.3616 4.0900 4.7274 38 1 3.5282 3.0488 -0.9943 39 1 4.7273 1.7502 -0.7667 40 1 5.1522 4.6375 0.1350 41 1 5.7494 3.9840 -1.4109 42 1 7.4448 3.9271 0.4770 43 1 7.1192 2.3489 -0.2746 44 1 6.6208 3.9759 3.8708 45 1 8.3775 3.6165 5.5506 46 1 9.9954 0.4384 3.1628 47 1 8.2281 0.8000 1.4948 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292081156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:38 Heat of formation + Delta-G solvation = 71.551081 kcal Electronic energy + Delta-G solvation = -29673.453060 eV Core-core repulsion = 25822.787977 eV Total energy + Delta-G solvation = -3850.665084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.04542 -39.17661 -37.32334 -36.51954 -36.15762 -33.75632 -32.79403 -31.83525 -31.33781 -29.92791 -28.96346 -27.24354 -25.45769 -24.12759 -23.36986 -22.76313 -21.83980 -20.74320 -19.15550 -19.00061 -18.82595 -17.35842 -16.95955 -16.26520 -15.79791 -15.31124 -15.09330 -14.87034 -14.66702 -14.23426 -14.15269 -14.07182 -13.91425 -13.73825 -13.64695 -13.20131 -12.94473 -12.89342 -12.83480 -12.43432 -12.34249 -12.19858 -12.00101 -11.51039 -11.43491 -11.21854 -11.19532 -11.04312 -10.85175 -10.67076 -10.40039 -10.21336 -9.91218 -9.53822 -9.32024 -9.24635 -9.10043 -8.71617 -8.50333 -8.46559 -7.27385 -6.06731 -4.04130 0.52765 1.16564 2.48926 2.72233 2.75643 2.97716 3.08104 3.37751 3.43792 3.50943 3.66000 3.72887 4.48578 4.61174 4.65102 4.66341 4.72682 4.84356 5.01420 5.07068 5.09265 5.25258 5.29279 5.30626 5.36753 5.51854 5.62103 5.64855 5.75570 5.76458 5.79362 5.82942 5.94432 6.06760 6.08633 6.12241 6.26587 6.34502 6.39260 6.42081 6.54753 6.83903 7.02751 7.16478 7.27237 7.30282 7.36255 7.50353 7.61641 7.99097 8.07343 8.44732 8.58094 8.92368 9.58954 11.05857 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010977 B = 0.003806 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.206264 B = 7354.328014 C = 8760.371694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 C 0.080 3.920 4 N -0.516 5.516 5 C 0.140 3.860 6 C -0.544 4.544 7 H 0.070 0.930 8 C 0.077 3.923 9 N -0.902 5.902 10 Si 0.877 3.123 11 H -0.275 1.275 12 H -0.291 1.291 13 H -0.265 1.265 14 C 0.077 3.923 15 H 0.101 0.899 16 C -0.124 4.124 17 C -0.134 4.134 18 C 0.119 3.881 19 N -0.578 5.578 20 C 0.185 3.815 21 C -0.107 4.107 22 C -0.057 4.057 23 C -0.042 4.042 24 C 0.261 3.739 25 N -0.427 5.427 26 C -0.060 4.060 27 C -0.123 4.123 28 C 0.534 3.466 29 O -0.506 6.506 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.027 0.973 36 H 0.061 0.939 37 H 0.262 0.738 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.134 0.866 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.803 -1.252 -11.189 18.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.152 4.152 3 C -0.048 4.048 4 N -0.240 5.240 5 C 0.014 3.986 6 C -0.582 4.582 7 H 0.088 0.912 8 C -0.125 4.125 9 N -0.541 5.541 10 Si 0.705 3.295 11 H -0.200 1.200 12 H -0.217 1.217 13 H -0.189 1.189 14 C -0.034 4.034 15 H 0.119 0.881 16 C -0.162 4.162 17 C -0.172 4.172 18 C -0.003 4.003 19 N -0.311 5.311 20 C 0.093 3.907 21 C -0.127 4.127 22 C -0.078 4.078 23 C -0.046 4.046 24 C -0.054 4.054 25 N -0.102 5.102 26 C -0.081 4.081 27 C -0.143 4.143 28 C 0.323 3.677 29 O -0.377 6.377 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.154 0.846 45 H 0.153 0.847 46 H 0.152 0.848 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 16.064 -2.097 -9.323 18.692 hybrid contribution -1.037 0.249 0.652 1.250 sum 15.027 -1.848 -8.671 17.448 Atomic orbital electron populations 1.23762 0.96087 1.01355 1.01812 1.22728 0.95467 0.98233 0.98725 1.21220 0.94554 0.95405 0.93575 1.62375 1.20682 1.36307 1.04611 1.20544 0.93796 0.96647 0.87600 1.21545 1.30532 1.04537 1.01593 0.91180 1.24846 0.94489 0.94949 0.98264 1.69925 1.32563 1.24947 1.26676 0.86807 0.77217 0.82838 0.82662 1.20045 1.21680 1.18919 1.21360 0.92003 0.97226 0.92820 0.88137 1.21881 0.98315 0.99382 0.96610 1.21883 0.94837 0.99347 1.01139 1.21441 0.97810 0.98170 0.82902 1.45207 1.05924 1.65864 1.14086 1.17865 0.89147 0.93403 0.90321 1.21278 0.98131 0.99586 0.93664 1.21036 0.92373 0.95680 0.98722 1.16028 0.94301 1.01025 0.93200 1.25721 0.93011 0.93510 0.93137 1.81243 1.10755 1.08362 1.09837 1.20966 0.97877 0.97587 0.91702 1.21152 0.95370 0.97200 1.00534 1.20415 0.82413 0.76400 0.88454 1.90697 1.83263 1.41081 1.22680 0.89306 0.88451 0.87987 0.92978 0.91294 0.95458 0.92113 0.92836 0.90453 0.90616 0.90633 0.89578 0.90717 0.91600 0.84627 0.84699 0.84779 0.84700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.15 14.32 29.02 0.42 -2.73 16 2 C -0.13 -2.23 8.42 -36.02 -0.30 -2.54 16 3 C 0.08 1.39 4.63 -4.98 -0.02 1.36 16 4 N -0.52 -10.15 4.55 -231.29 -1.05 -11.20 16 5 C 0.14 3.40 3.74 -4.97 -0.02 3.38 16 6 C -0.54 -14.75 7.89 -34.44 -0.27 -15.02 16 7 H 0.07 2.00 6.21 -52.49 -0.33 1.68 16 8 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 9 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 10 Si 0.88 22.56 27.37 -169.99 -4.65 17.91 16 11 H -0.27 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 13 H -0.26 -6.67 6.70 56.52 0.38 -6.29 16 14 C 0.08 1.35 2.12 -69.18 -0.15 1.20 16 15 H 0.10 2.07 6.07 -51.93 -0.32 1.75 16 16 C -0.12 -1.48 4.01 -26.61 -0.11 -1.59 16 17 C -0.13 -1.19 6.02 -26.59 -0.16 -1.36 16 18 C 0.12 1.04 6.22 -4.48 -0.03 1.02 16 19 N -0.58 -7.50 2.86 -114.63 -0.33 -7.83 16 20 C 0.18 2.27 4.42 -83.71 -0.37 1.90 16 21 C -0.11 -1.31 9.28 -39.46 -0.37 -1.67 16 22 C -0.06 -0.60 9.75 -39.21 -0.38 -0.98 16 23 C -0.04 -0.43 5.74 -106.82 -0.61 -1.04 16 24 C 0.26 3.01 15.33 -22.47 -0.34 2.67 16 25 N -0.43 -5.81 18.54 41.84 0.78 -5.03 16 26 C -0.06 -0.55 9.75 -39.21 -0.38 -0.93 16 27 C -0.12 -1.23 9.79 -39.46 -0.39 -1.62 16 28 C 0.53 9.39 7.06 -11.87 -0.08 9.31 16 29 O -0.51 -11.12 13.32 5.56 0.07 -11.05 16 30 H 0.09 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.10 1.68 7.84 -52.48 -0.41 1.27 16 32 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 33 H 0.05 1.03 6.33 -51.93 -0.33 0.70 16 34 H 0.07 0.98 5.85 -51.93 -0.30 0.68 16 35 H 0.03 0.69 6.45 -51.93 -0.33 0.36 16 36 H 0.06 1.61 4.69 -51.93 -0.24 1.37 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.08 0.89 6.99 -51.93 -0.36 0.53 16 39 H 0.08 0.86 7.97 -51.93 -0.41 0.45 16 40 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 45 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 46 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 47 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 383.01 15.07 5.77 5.77 Total: -1.00 -33.83 383.01 -8.73 -42.56 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.42 Total: 1.87 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -3.67 Total: -6.53 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.17 Total: -50.53 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.07 Total: -11.05 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.65 Total: 17.91 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.83 -8.73 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292081156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.112 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds