Wall clock time and date at job start Tue Mar 31 2020 22:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50699 * 120.00618 * 2 1 4 4 N 1.46894 * 109.47725 * 124.99720 * 3 2 1 5 5 C 1.46899 * 110.99776 * 296.13644 * 4 3 2 6 6 C 1.50704 * 109.47035 * 293.62637 * 5 4 3 7 7 H 1.08000 * 119.99513 * 5.38837 * 6 5 4 8 8 C 1.37876 * 120.00114 * 185.38545 * 6 5 4 9 9 N 1.31520 * 119.99816 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00105 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47334 * 89.99831 * 10 8 6 12 12 H 1.48504 * 109.47265 * 210.00067 * 10 8 6 13 13 H 1.48503 * 109.46981 * 329.99375 * 10 8 6 14 14 C 1.46897 * 111.00473 * 172.17879 * 4 3 2 15 15 H 1.09004 * 109.32865 * 76.91448 * 14 4 3 16 16 C 1.52890 * 109.50265 * 317.31130 * 14 4 3 17 17 C 1.53341 * 108.58466 * 191.22524 * 16 14 4 18 18 C 1.52928 * 108.67051 * 67.34955 * 17 16 14 19 19 N 1.45748 * 110.48900 * 309.24494 * 18 17 16 20 20 C 1.39540 * 117.94864 * 199.07923 * 19 18 17 21 21 C 1.39105 * 119.92388 * 111.09650 * 20 19 18 22 22 C 1.37689 * 120.07951 * 179.72308 * 21 20 19 23 23 C 1.39773 * 119.92067 * 0.57282 * 22 21 20 24 24 C 1.43206 * 120.08039 * 179.68290 * 23 22 21 25 25 N 9.61019 * 156.54944 * 286.24849 * 4 1 2 26 26 C 1.39769 * 119.83891 * 359.69740 * 23 22 21 27 27 C 1.37697 * 119.92066 * 0.02562 * 26 23 22 28 28 C 1.33354 * 124.10531 * 19.09350 * 19 18 17 29 29 O 1.21279 * 118.24549 * 177.75494 * 28 19 18 30 30 H 1.08000 * 120.00767 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.99972 * 0.02562 * 1 2 3 32 32 H 1.08005 * 119.99768 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.46634 * 4.98910 * 3 2 1 34 34 H 1.09004 * 109.46616 * 244.99900 * 3 2 1 35 35 H 1.08998 * 109.47701 * 53.63013 * 5 4 3 36 36 H 1.09000 * 109.47290 * 173.63137 * 5 4 3 37 37 H 0.97000 * 119.99793 * 179.97438 * 9 8 6 38 38 H 1.09001 * 109.74646 * 71.35672 * 16 14 4 39 39 H 1.08991 * 109.47358 * 310.94371 * 16 14 4 40 40 H 1.08995 * 109.60740 * 307.59554 * 17 16 14 41 41 H 1.09005 * 109.73784 * 187.18104 * 17 16 14 42 42 H 1.09006 * 109.29669 * 188.92988 * 18 17 16 43 43 H 1.09000 * 109.13463 * 69.45189 * 18 17 16 44 44 H 1.07999 * 119.95769 * 359.97438 * 21 20 19 45 45 H 1.08006 * 120.04239 * 180.27317 * 22 21 20 46 46 H 1.08000 * 120.03986 * 180.02562 * 26 23 22 47 47 H 1.08000 * 119.95746 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9963 1.3319 1.1345 5 6 2.2724 1.2950 2.4121 6 6 1.4805 2.5664 2.5778 7 1 1.4419 3.2870 1.7743 8 6 0.8053 2.8097 3.7550 9 7 0.1138 3.9191 3.8993 10 14 0.8725 1.5636 5.1450 11 1 2.0234 1.8722 6.0312 12 1 -0.3871 1.6279 5.9289 13 1 1.0346 0.1999 4.5798 14 6 3.8786 2.5043 1.0630 15 1 3.3282 3.3899 1.3805 16 6 4.3550 2.6975 -0.3769 17 6 5.4821 3.7373 -0.3834 18 6 6.6964 3.1474 0.3351 19 7 6.3094 2.6090 1.6330 20 6 7.3120 2.4063 2.5822 21 6 7.3594 3.2021 3.7222 22 6 8.3438 3.0012 4.6636 23 6 9.3034 2.0040 4.4671 24 6 10.3328 1.7966 5.4408 25 7 11.1494 1.6321 6.2131 26 6 9.2559 1.2100 3.3178 27 6 8.2651 1.4129 2.3833 28 6 5.0574 2.2976 1.9702 29 8 4.8607 1.8173 3.0663 30 1 -0.5401 -0.9352 0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8499 -0.9354 0.0004 33 1 1.3586 2.1316 0.0894 34 1 2.6214 1.4024 -0.9314 35 1 1.5949 0.4412 2.4214 36 1 2.9855 1.2019 3.2313 37 1 -0.3616 4.0900 4.7274 38 1 3.5282 3.0488 -0.9943 39 1 4.7273 1.7502 -0.7667 40 1 5.1522 4.6375 0.1350 41 1 5.7494 3.9840 -1.4109 42 1 7.4448 3.9271 0.4770 43 1 7.1192 2.3489 -0.2746 44 1 6.6208 3.9759 3.8708 45 1 8.3775 3.6165 5.5506 46 1 9.9954 0.4384 3.1628 47 1 8.2281 0.8000 1.4948 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292081156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:37 Heat of formation + Delta-G solvation = 50.267586 kcal Electronic energy + Delta-G solvation = -29674.375982 eV Core-core repulsion = 25822.787977 eV Total energy + Delta-G solvation = -3851.588005 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.16379 -40.20646 -38.67236 -37.67859 -37.20409 -34.88942 -34.76842 -33.30748 -32.15848 -30.96155 -30.33053 -28.84744 -26.77798 -25.27048 -24.63790 -23.74387 -22.86858 -22.31085 -20.51346 -20.11123 -19.86281 -18.85079 -18.41314 -17.40485 -17.11252 -16.63015 -16.39688 -16.14003 -15.96987 -15.59223 -15.26569 -15.07781 -15.05822 -14.76643 -14.62081 -14.52163 -14.37027 -14.06977 -14.00766 -13.86758 -13.52514 -13.26203 -13.24875 -13.04496 -12.77213 -12.62374 -12.53025 -12.26752 -12.13810 -12.02082 -11.93468 -11.72467 -11.64211 -11.50763 -10.82511 -10.46459 -10.23257 -10.07059 -10.03795 -9.46780 -8.96828 -8.31423 -6.29949 -0.34867 0.35594 1.28412 1.32553 1.42572 1.45120 1.56775 1.67986 1.83421 1.98058 2.32960 2.79244 2.84506 3.06960 3.36814 3.74196 3.88711 3.89322 3.91708 3.94330 4.10084 4.23848 4.24994 4.39180 4.43130 4.46380 4.56389 4.63618 4.69036 4.82180 4.94861 4.96740 4.98172 5.01311 5.05803 5.11540 5.12220 5.21226 5.25872 5.29902 5.35064 5.44163 5.50521 5.56489 5.81655 5.94085 5.95338 6.13200 6.26064 6.36115 6.39571 6.52359 6.73151 7.29852 7.35523 8.84178 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010977 B = 0.003806 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.206264 B = 7354.328014 C = 8760.371694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.143 4.143 3 C 0.081 3.919 4 N -0.512 5.512 5 C 0.155 3.845 6 C -0.527 4.527 7 H 0.044 0.956 8 C 0.022 3.978 9 N -0.944 5.944 10 Si 0.930 3.070 11 H -0.281 1.281 12 H -0.281 1.281 13 H -0.255 1.255 14 C 0.074 3.926 15 H 0.057 0.943 16 C -0.116 4.116 17 C -0.128 4.128 18 C 0.109 3.891 19 N -0.566 5.566 20 C 0.163 3.837 21 C -0.126 4.126 22 C -0.055 4.055 23 C -0.044 4.044 24 C 0.284 3.716 25 N -0.464 5.464 26 C -0.045 4.045 27 C -0.116 4.116 28 C 0.531 3.469 29 O -0.562 6.562 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.119 0.881 33 H 0.020 0.980 34 H 0.108 0.892 35 H 0.018 0.982 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.128 0.872 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.117 0.883 45 H 0.146 0.854 46 H 0.165 0.835 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.269 -2.986 -13.453 22.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.161 4.161 3 C -0.046 4.046 4 N -0.236 5.236 5 C 0.028 3.972 6 C -0.566 4.566 7 H 0.062 0.938 8 C -0.176 4.176 9 N -0.585 5.585 10 Si 0.756 3.244 11 H -0.207 1.207 12 H -0.207 1.207 13 H -0.179 1.179 14 C -0.038 4.038 15 H 0.074 0.926 16 C -0.153 4.153 17 C -0.166 4.166 18 C -0.011 4.011 19 N -0.297 5.297 20 C 0.072 3.928 21 C -0.146 4.146 22 C -0.076 4.076 23 C -0.047 4.047 24 C -0.031 4.031 25 N -0.139 5.139 26 C -0.066 4.066 27 C -0.135 4.135 28 C 0.320 3.680 29 O -0.438 6.438 30 H 0.131 0.869 31 H 0.098 0.902 32 H 0.137 0.863 33 H 0.038 0.962 34 H 0.125 0.875 35 H 0.036 0.964 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.078 0.922 41 H 0.146 0.854 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.135 0.865 45 H 0.163 0.837 46 H 0.183 0.817 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 18.574 -3.816 -11.643 22.251 hybrid contribution -1.742 0.874 1.256 2.318 sum 16.832 -2.943 -10.387 19.997 Atomic orbital electron populations 1.23884 0.96204 1.01715 1.01315 1.22865 0.95685 0.98428 0.99144 1.21306 0.94129 0.94846 0.94281 1.62314 1.20448 1.37583 1.03218 1.20195 0.92879 0.94340 0.89790 1.21773 1.29451 1.04992 1.00363 0.93793 1.25574 0.94762 0.96565 1.00677 1.70034 1.34237 1.26763 1.27452 0.85960 0.77095 0.81261 0.80091 1.20718 1.20701 1.17916 1.21412 0.91436 0.94283 0.96633 0.92553 1.21877 0.99659 1.01386 0.92427 1.21916 0.93625 0.97557 1.03467 1.21858 0.98204 0.99915 0.81083 1.45123 1.04584 1.64321 1.15650 1.18123 0.89661 0.94623 0.90394 1.21217 0.98598 1.00131 0.94670 1.21109 0.91928 0.95908 0.98683 1.16070 0.93846 1.01305 0.93525 1.25764 0.92410 0.92388 0.92498 1.81273 1.12059 1.09692 1.10922 1.21286 0.97741 0.97210 0.90365 1.21341 0.94418 0.96287 1.01459 1.20408 0.83895 0.76143 0.87546 1.90658 1.84434 1.44089 1.24637 0.86894 0.90227 0.86271 0.96177 0.87466 0.96356 0.93957 0.92794 0.90017 0.88845 0.92195 0.85417 0.88367 0.88413 0.86541 0.83653 0.81704 0.82276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.20 14.32 67.79 0.97 -5.23 16 2 C -0.14 -4.63 8.42 25.65 0.22 -4.42 16 3 C 0.08 2.79 4.63 85.56 0.40 3.19 16 4 N -0.51 -20.28 4.55 -885.68 -4.03 -24.30 16 5 C 0.16 7.74 3.74 85.56 0.32 8.06 16 6 C -0.53 -29.95 7.89 25.60 0.20 -29.75 16 7 H 0.04 2.68 6.21 -2.91 -0.02 2.66 16 8 C 0.02 1.32 5.47 84.65 0.46 1.79 16 9 N -0.94 -59.29 13.96 21.45 0.30 -58.99 16 10 Si 0.93 47.82 27.37 68.60 1.88 49.70 16 11 H -0.28 -14.65 7.11 99.48 0.71 -13.94 16 12 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 13 H -0.26 -12.61 6.70 99.48 0.67 -11.94 16 14 C 0.07 2.61 2.12 43.97 0.09 2.70 16 15 H 0.06 2.49 6.07 -2.38 -0.01 2.48 16 16 C -0.12 -2.52 4.01 30.67 0.12 -2.40 16 17 C -0.13 -1.89 6.02 30.68 0.18 -1.71 16 18 C 0.11 1.53 6.22 86.50 0.54 2.06 16 19 N -0.57 -13.85 2.86 -635.75 -1.82 -15.67 16 20 C 0.16 3.78 4.42 38.33 0.17 3.95 16 21 C -0.13 -3.10 9.28 22.35 0.21 -2.89 16 22 C -0.06 -1.13 9.75 22.51 0.22 -0.91 16 23 C -0.04 -0.81 5.74 -21.29 -0.12 -0.93 16 24 C 0.28 6.08 15.33 88.33 1.35 7.43 16 25 N -0.46 -12.10 18.54 19.01 0.35 -11.74 16 26 C -0.05 -0.67 9.75 22.51 0.22 -0.45 16 27 C -0.12 -1.94 9.79 22.35 0.22 -1.72 16 28 C 0.53 18.80 7.06 87.71 0.62 19.42 16 29 O -0.56 -25.51 13.32 -3.03 -0.04 -25.55 16 30 H 0.11 3.03 8.06 -2.91 -0.02 3.01 16 31 H 0.08 2.82 7.84 -2.91 -0.02 2.79 16 32 H 0.12 3.48 8.06 -2.91 -0.02 3.46 16 33 H 0.02 0.82 6.33 -2.39 -0.02 0.80 16 34 H 0.11 2.83 5.85 -2.39 -0.01 2.82 16 35 H 0.02 0.94 6.45 -2.39 -0.02 0.93 16 36 H 0.04 2.32 4.69 -2.39 -0.01 2.31 16 37 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 38 H 0.08 1.72 6.99 -2.39 -0.02 1.70 16 39 H 0.09 1.76 7.97 -2.39 -0.02 1.74 16 40 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 41 H 0.13 0.94 8.14 -2.38 -0.02 0.92 16 42 H 0.10 1.00 8.08 -2.38 -0.02 0.98 16 43 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.12 3.22 8.06 -2.91 -0.02 3.20 16 45 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 46 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 47 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -79.01 383.01 3.98 -75.03 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.94 Total: 13.32 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 6.39 Total: -1.79 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -5.19 Total: -110.70 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.04 Total: -25.55 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 1.88 Total: 49.70 kcal Total: -79.01 3.98 -75.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292081156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.299 kcal (2) G-P(sol) polarization free energy of solvation -79.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds