Wall clock time and date at job start Tue Mar 31 2020 22:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.53000 * 109.46886 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.36916 * 119.93805 * 269.72943 * 5 4 3 7 7 N 1.37657 * 120.58010 * 0.02562 * 6 5 4 8 8 C 1.38462 * 118.83726 * 179.74142 * 6 5 4 9 9 N 1.41087 * 120.64893 * 180.23485 * 8 6 5 10 10 C 1.46896 * 110.99791 * 244.27238 * 9 8 6 11 11 C 1.46899 * 110.99955 * 120.31707 * 9 8 6 12 12 C 1.50697 * 109.47103 * 189.99888 * 11 9 8 13 13 O 1.21295 * 119.99973 * 0.02562 * 12 11 9 14 14 N 1.34771 * 120.00075 * 179.97438 * 12 11 9 15 15 C 1.37102 * 120.00269 * 180.02562 * 14 12 11 16 16 H 1.07993 * 119.99463 * 359.97438 * 15 14 12 17 17 C 1.38947 * 120.00161 * 180.02562 * 15 14 12 18 18 N 1.31410 * 119.99899 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00168 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47138 * 89.99644 * 19 17 15 21 21 H 1.48498 * 109.47378 * 210.00391 * 19 17 15 22 22 H 1.48507 * 109.46639 * 330.00245 * 19 17 15 23 23 C 1.39990 * 118.69901 * 0.54571 * 8 6 5 24 24 O 1.35361 * 120.11228 * 179.68918 * 23 8 6 25 25 N 1.32845 * 119.77091 * 359.71532 * 23 8 6 26 26 C 1.32890 * 121.18813 * 359.97438 * 25 23 8 27 27 O 1.22056 * 119.31041 * 180.02562 * 26 25 23 28 28 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47098 * 299.99158 * 1 2 3 30 30 H 1.09001 * 109.47583 * 60.00267 * 1 2 3 31 31 H 1.09001 * 109.46741 * 240.00394 * 2 1 3 32 32 H 1.09002 * 109.47398 * 120.00496 * 2 1 3 33 33 H 1.09001 * 109.46652 * 60.00345 * 3 2 1 34 34 H 1.08992 * 109.47514 * 300.00434 * 3 2 1 35 35 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 36 36 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 37 37 H 0.96999 * 120.00162 * 359.97438 * 7 6 5 38 38 H 0.96994 * 119.99948 * 180.02562 * 7 6 5 39 39 H 1.09004 * 109.47538 * 60.00003 * 10 9 8 40 40 H 1.09006 * 109.47062 * 180.02562 * 10 9 8 41 41 H 1.09000 * 109.47079 * 299.99701 * 10 9 8 42 42 H 1.09002 * 109.46996 * 310.00191 * 11 9 8 43 43 H 1.09002 * 109.47192 * 69.99777 * 11 9 8 44 44 H 0.97006 * 120.00082 * 0.02562 * 14 12 11 45 45 H 0.97008 * 119.99682 * 179.97438 * 18 17 15 46 46 H 0.96701 * 113.99733 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.2907 3.4668 -1.1862 7 7 4.0693 2.8271 -2.3848 8 6 4.7468 4.7739 -1.1590 9 7 4.9942 5.4744 -2.3585 10 6 6.4191 5.8067 -2.4897 11 6 4.1619 6.6818 -2.4442 12 6 4.2674 7.2674 -3.8287 13 8 4.9668 6.7313 -4.6623 14 7 3.5839 8.3861 -4.1411 15 6 3.6795 8.9186 -5.4009 16 1 4.3028 8.4417 -6.1427 17 6 2.9752 10.0723 -5.7228 18 7 2.2172 10.6527 -4.8199 19 14 3.1060 10.7982 -7.4390 20 1 2.0530 10.2114 -8.3062 21 1 2.9259 12.2705 -7.3688 22 1 4.4432 10.4895 -8.0064 23 6 4.9640 5.3845 0.0818 24 8 5.4156 6.6591 0.1417 25 7 4.7258 4.7084 1.2003 26 6 4.2821 3.4562 1.1663 27 8 4.0742 2.8673 2.2150 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.9337 0.9285 0.8891 36 1 3.9329 0.9289 -0.8909 37 1 3.7460 1.9126 -2.3940 38 1 4.2372 3.2905 -3.2202 39 1 7.0074 4.8891 -2.4932 40 1 6.5818 6.3466 -3.4226 41 1 6.7252 6.4314 -1.6506 42 1 3.1236 6.4227 -2.2374 43 1 4.5064 7.4132 -1.7131 44 1 3.0243 8.8146 -3.4746 45 1 1.7258 11.4584 -5.0446 46 1 5.5347 6.9922 1.0417 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342195142.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:21 Heat of formation + Delta-G solvation = -59.693826 kcal Electronic energy + Delta-G solvation = -30353.204542 eV Core-core repulsion = 26085.998989 eV Total energy + Delta-G solvation = -4267.205553 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.94748 -39.29952 -38.27146 -37.65835 -36.34840 -35.52117 -34.53133 -33.86940 -33.29027 -31.25405 -29.84736 -28.79296 -27.76201 -25.06336 -25.03930 -23.97091 -23.40801 -21.90867 -21.47939 -20.06425 -19.13500 -18.89046 -17.85638 -17.30924 -16.86712 -16.44375 -16.13355 -15.99821 -15.58039 -15.28302 -14.75338 -14.62996 -14.50454 -14.40407 -13.92759 -13.90838 -13.70298 -13.57875 -13.53559 -13.11226 -12.81827 -12.73986 -12.13467 -11.86931 -11.77885 -11.55741 -11.51547 -11.32293 -11.23243 -11.03988 -10.96487 -10.77539 -10.41158 -10.23682 -10.11249 -9.94215 -9.84116 -9.48840 -8.55099 -8.07118 -7.94819 -7.88892 -6.42697 -3.83685 0.87419 1.73915 2.02178 3.00581 3.16233 3.25254 3.30449 3.45476 3.76522 3.87907 3.90921 4.17812 4.32930 4.37796 4.50888 4.59062 4.70790 4.97255 5.04350 5.10471 5.15665 5.17975 5.24382 5.34704 5.38518 5.50845 5.61743 5.72992 5.79559 5.84402 5.89473 5.91330 6.00988 6.05270 6.17054 6.28385 6.54988 6.68437 7.08791 7.16813 7.18259 7.51712 7.54412 7.89079 8.05063 8.25049 8.60280 9.16676 9.53686 10.04811 10.74911 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.002764 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.921059 B =10126.719115 C =11047.749315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.138 4.138 4 C 0.093 3.907 5 N -0.544 5.544 6 C 0.524 3.476 7 N -0.815 5.815 8 C -0.171 4.171 9 N -0.447 5.447 10 C 0.025 3.975 11 C 0.048 3.952 12 C 0.445 3.555 13 O -0.582 6.582 14 N -0.563 5.563 15 C -0.299 4.299 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.901 5.901 19 Si 0.929 3.071 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.270 1.270 23 C 0.457 3.543 24 O -0.442 6.442 25 N -0.646 5.646 26 C 0.672 3.328 27 O -0.547 6.547 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.404 0.596 38 H 0.439 0.561 39 H 0.054 0.946 40 H 0.098 0.902 41 H 0.031 0.969 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.585 -17.812 8.359 19.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.176 4.176 4 C -0.029 4.029 5 N -0.271 5.271 6 C 0.295 3.705 7 N -0.359 5.359 8 C -0.280 4.280 9 N -0.168 5.168 10 C -0.122 4.122 11 C -0.082 4.082 12 C 0.231 3.769 13 O -0.466 6.466 14 N -0.199 5.199 15 C -0.428 4.428 16 H 0.121 0.879 17 C -0.179 4.179 18 N -0.542 5.542 19 Si 0.756 3.244 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.194 1.194 23 C 0.261 3.739 24 O -0.238 6.238 25 N -0.408 5.408 26 C 0.374 3.626 27 O -0.422 6.422 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.235 0.765 38 H 0.276 0.724 39 H 0.072 0.928 40 H 0.116 0.884 41 H 0.050 0.950 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 0.784 -18.400 8.276 20.191 hybrid contribution -0.330 0.947 -0.250 1.034 sum 0.454 -17.453 8.026 19.216 Atomic orbital electron populations 1.21757 0.95273 1.01826 1.02196 1.21433 0.96503 0.95426 1.02393 1.22010 0.93525 0.98387 1.03720 1.21931 0.95626 0.80519 1.04872 1.46813 1.58812 1.15827 1.05616 1.17531 0.84631 0.87712 0.80584 1.42424 1.70208 1.17396 1.05856 1.17464 1.27931 0.93857 0.88762 1.58952 1.07057 1.22731 1.28101 1.22606 0.86065 1.00448 1.03032 1.21971 0.97793 0.91336 0.97128 1.19718 0.84903 0.83235 0.89048 1.90470 1.43283 1.62357 1.50538 1.41862 1.41721 1.22897 1.13428 1.19679 1.26677 1.07367 0.89097 0.87904 1.25260 0.96300 0.96794 0.99584 1.69617 1.29572 1.20754 1.34253 0.85874 0.78853 0.77865 0.81779 1.20457 1.20959 1.19436 1.20861 0.79702 0.83622 0.89705 1.85171 1.78742 1.23329 1.36531 1.69495 1.34962 1.08961 1.27336 1.17167 0.79373 0.83871 0.82180 1.90983 1.56905 1.65243 1.29109 0.92501 0.92515 0.92568 0.91734 0.91416 0.90455 0.91352 0.87366 0.89809 0.76491 0.72422 0.92761 0.88399 0.95021 0.89989 0.91632 0.77471 0.91865 0.73401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.12 -0.70 5.93 -26.73 -0.16 -0.85 16 3 C -0.14 -1.06 5.54 -26.73 -0.15 -1.21 16 4 C 0.09 0.76 4.93 -4.04 -0.02 0.74 16 5 N -0.54 -6.29 2.61 -120.69 -0.32 -6.60 16 6 C 0.52 5.89 7.54 -152.55 -1.15 4.74 16 7 N -0.82 -6.54 8.86 31.55 0.28 -6.26 16 8 C -0.17 -2.34 4.75 -82.85 -0.39 -2.73 16 9 N -0.45 -6.81 3.69 -179.66 -0.66 -7.47 16 10 C 0.03 0.39 8.97 60.06 0.54 0.93 16 11 C 0.05 0.83 4.98 -4.98 -0.02 0.81 16 12 C 0.45 9.92 7.47 -10.99 -0.08 9.83 16 13 O -0.58 -14.44 13.91 5.54 0.08 -14.36 16 14 N -0.56 -13.77 5.29 -10.97 -0.06 -13.83 16 15 C -0.30 -8.05 9.68 -14.93 -0.14 -8.20 16 16 H 0.10 2.89 7.16 -52.49 -0.38 2.52 16 17 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 18 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 19 Si 0.93 20.59 29.55 -169.99 -5.02 15.56 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 C 0.46 6.39 7.44 -16.46 -0.12 6.27 16 24 O -0.44 -5.40 9.58 -17.77 -0.17 -5.57 16 25 N -0.65 -10.08 10.37 -16.86 -0.17 -10.26 16 26 C 0.67 10.50 8.33 -88.78 -0.74 9.76 16 27 O -0.55 -9.97 16.72 4.87 0.08 -9.89 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.11 0.97 7.38 -51.93 -0.38 0.59 16 36 H 0.08 0.41 6.43 -51.93 -0.33 0.08 16 37 H 0.40 1.99 6.76 -40.82 -0.28 1.71 16 38 H 0.44 4.05 8.12 -40.82 -0.33 3.72 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.10 1.81 5.83 -51.93 -0.30 1.51 16 41 H 0.03 0.47 6.31 -51.93 -0.33 0.15 16 42 H 0.08 1.35 8.06 -51.93 -0.42 0.93 16 43 H 0.07 1.11 6.30 -51.93 -0.33 0.78 16 44 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 45 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 46 H 0.41 3.39 8.98 45.56 0.41 3.80 16 LS Contribution 378.60 15.07 5.71 5.71 Total: -1.00 -34.46 378.60 -7.22 -41.68 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -5.51 Total: 14.68 kcal Atomic # 6 Polarization: 22.19 SS G_CDS: -2.17 Total: 20.02 kcal Atomic # 7 Polarization: -67.62 SS G_CDS: -0.21 Total: -67.83 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.01 Total: -29.81 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.46 -7.22 -41.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342195142.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.017 kcal (2) G-P(sol) polarization free energy of solvation -34.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds