Wall clock time and date at job start Tue Mar 31 2020 22:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.53000 * 109.46886 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.36916 * 119.93805 * 269.72943 * 5 4 3 7 7 N 1.37657 * 120.58010 * 0.02562 * 6 5 4 8 8 C 1.38462 * 118.83726 * 179.74142 * 6 5 4 9 9 N 1.41087 * 120.64893 * 180.23485 * 8 6 5 10 10 C 1.46896 * 110.99791 * 244.27238 * 9 8 6 11 11 C 1.46899 * 110.99955 * 120.31707 * 9 8 6 12 12 C 1.50697 * 109.47103 * 189.99888 * 11 9 8 13 13 O 1.21295 * 119.99973 * 0.02562 * 12 11 9 14 14 N 1.34771 * 120.00075 * 179.97438 * 12 11 9 15 15 C 1.37102 * 120.00269 * 180.02562 * 14 12 11 16 16 H 1.07993 * 119.99463 * 359.97438 * 15 14 12 17 17 C 1.38947 * 120.00161 * 180.02562 * 15 14 12 18 18 N 1.31410 * 119.99899 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00168 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47138 * 89.99644 * 19 17 15 21 21 H 1.48498 * 109.47378 * 210.00391 * 19 17 15 22 22 H 1.48507 * 109.46639 * 330.00245 * 19 17 15 23 23 C 1.39990 * 118.69901 * 0.54571 * 8 6 5 24 24 O 1.35361 * 120.11228 * 179.68918 * 23 8 6 25 25 N 1.32845 * 119.77091 * 359.71532 * 23 8 6 26 26 C 1.32890 * 121.18813 * 359.97438 * 25 23 8 27 27 O 1.22056 * 119.31041 * 180.02562 * 26 25 23 28 28 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47098 * 299.99158 * 1 2 3 30 30 H 1.09001 * 109.47583 * 60.00267 * 1 2 3 31 31 H 1.09001 * 109.46741 * 240.00394 * 2 1 3 32 32 H 1.09002 * 109.47398 * 120.00496 * 2 1 3 33 33 H 1.09001 * 109.46652 * 60.00345 * 3 2 1 34 34 H 1.08992 * 109.47514 * 300.00434 * 3 2 1 35 35 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 36 36 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 37 37 H 0.96999 * 120.00162 * 359.97438 * 7 6 5 38 38 H 0.96994 * 119.99948 * 180.02562 * 7 6 5 39 39 H 1.09004 * 109.47538 * 60.00003 * 10 9 8 40 40 H 1.09006 * 109.47062 * 180.02562 * 10 9 8 41 41 H 1.09000 * 109.47079 * 299.99701 * 10 9 8 42 42 H 1.09002 * 109.46996 * 310.00191 * 11 9 8 43 43 H 1.09002 * 109.47192 * 69.99777 * 11 9 8 44 44 H 0.97006 * 120.00082 * 0.02562 * 14 12 11 45 45 H 0.97008 * 119.99682 * 179.97438 * 18 17 15 46 46 H 0.96701 * 113.99733 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.2907 3.4668 -1.1862 7 7 4.0693 2.8271 -2.3848 8 6 4.7468 4.7739 -1.1590 9 7 4.9942 5.4744 -2.3585 10 6 6.4191 5.8067 -2.4897 11 6 4.1619 6.6818 -2.4442 12 6 4.2674 7.2674 -3.8287 13 8 4.9668 6.7313 -4.6623 14 7 3.5839 8.3861 -4.1411 15 6 3.6795 8.9186 -5.4009 16 1 4.3028 8.4417 -6.1427 17 6 2.9752 10.0723 -5.7228 18 7 2.2172 10.6527 -4.8199 19 14 3.1060 10.7982 -7.4390 20 1 2.0530 10.2114 -8.3062 21 1 2.9259 12.2705 -7.3688 22 1 4.4432 10.4895 -8.0064 23 6 4.9640 5.3845 0.0818 24 8 5.4156 6.6591 0.1417 25 7 4.7258 4.7084 1.2003 26 6 4.2821 3.4562 1.1663 27 8 4.0742 2.8673 2.2150 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.9337 0.9285 0.8891 36 1 3.9329 0.9289 -0.8909 37 1 3.7460 1.9126 -2.3940 38 1 4.2372 3.2905 -3.2202 39 1 7.0074 4.8891 -2.4932 40 1 6.5818 6.3466 -3.4226 41 1 6.7252 6.4314 -1.6506 42 1 3.1236 6.4227 -2.2374 43 1 4.5064 7.4132 -1.7131 44 1 3.0243 8.8146 -3.4746 45 1 1.7258 11.4584 -5.0446 46 1 5.5347 6.9922 1.0417 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342195142.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:20 Heat of formation + Delta-G solvation = -89.319443 kcal Electronic energy + Delta-G solvation = -30354.489206 eV Core-core repulsion = 26085.998989 eV Total energy + Delta-G solvation = -4268.490216 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.97101 -40.57264 -39.70437 -38.81306 -37.36567 -36.56260 -35.74774 -35.47039 -34.16441 -33.21266 -30.69946 -29.85706 -29.13335 -26.75692 -25.87784 -25.30983 -24.34324 -22.91289 -22.11742 -21.18715 -20.78508 -19.84345 -19.76990 -18.38863 -17.76957 -17.54313 -17.46252 -16.97354 -16.66321 -16.43849 -16.27102 -16.02946 -15.70902 -15.47194 -15.37228 -15.17650 -14.91948 -14.68944 -14.27571 -14.09330 -13.96161 -13.75465 -13.50175 -13.39168 -12.98665 -12.59417 -12.48759 -12.47361 -12.37999 -12.35263 -12.09873 -12.07229 -11.94623 -11.54307 -11.39830 -11.20533 -11.06028 -10.69394 -10.25094 -9.94483 -9.37530 -8.98942 -8.41173 -5.89265 -0.10708 0.64295 1.07419 1.41256 1.45155 1.57344 2.09290 2.15132 2.32032 2.55334 2.67542 2.74320 3.26435 3.35122 3.53690 3.70833 3.75614 3.99309 4.05724 4.18535 4.23662 4.40755 4.43145 4.48474 4.58735 4.60465 4.64750 4.71583 4.83863 4.88287 4.93310 5.00826 5.07742 5.21480 5.25663 5.31928 5.42501 5.46699 5.80282 5.85380 6.06692 6.18223 6.36000 6.44354 6.65624 6.82311 7.16602 7.18488 7.62949 8.17426 8.76260 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.002764 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.921059 B =10126.719115 C =11047.749315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.132 4.132 4 C 0.087 3.913 5 N -0.537 5.537 6 C 0.542 3.458 7 N -0.789 5.789 8 C -0.193 4.193 9 N -0.441 5.441 10 C 0.032 3.968 11 C 0.062 3.938 12 C 0.449 3.551 13 O -0.607 6.607 14 N -0.576 5.576 15 C -0.326 4.326 16 H 0.084 0.916 17 C -0.016 4.016 18 N -0.924 5.924 19 Si 0.991 3.009 20 H -0.272 1.272 21 H -0.276 1.276 22 H -0.271 1.271 23 C 0.458 3.542 24 O -0.446 6.446 25 N -0.672 5.672 26 C 0.667 3.333 27 O -0.584 6.584 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.125 0.875 37 H 0.422 0.578 38 H 0.439 0.561 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.035 0.965 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.394 0.606 45 H 0.276 0.724 46 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.414 -19.262 7.339 20.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.170 4.170 4 C -0.034 4.034 5 N -0.262 5.262 6 C 0.309 3.691 7 N -0.333 5.333 8 C -0.301 4.301 9 N -0.162 5.162 10 C -0.115 4.115 11 C -0.069 4.069 12 C 0.237 3.763 13 O -0.492 6.492 14 N -0.213 5.213 15 C -0.455 4.455 16 H 0.102 0.898 17 C -0.215 4.215 18 N -0.565 5.565 19 Si 0.815 3.185 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.196 1.196 23 C 0.264 3.736 24 O -0.243 6.243 25 N -0.435 5.435 26 C 0.369 3.631 27 O -0.463 6.463 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.118 0.882 36 H 0.143 0.857 37 H 0.257 0.743 38 H 0.276 0.724 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.053 0.947 42 H 0.114 0.886 43 H 0.090 0.910 44 H 0.227 0.773 45 H 0.085 0.915 46 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 0.605 -19.882 7.232 21.165 hybrid contribution -0.255 1.300 0.069 1.326 sum 0.351 -18.582 7.301 19.968 Atomic orbital electron populations 1.21778 0.95609 1.02294 1.01602 1.21426 0.96150 0.94155 1.03556 1.21948 0.93113 0.99494 1.02456 1.22257 0.95903 0.78717 1.06511 1.46640 1.58013 1.16840 1.04673 1.17403 0.83263 0.87129 0.81268 1.42422 1.68227 1.18070 1.04557 1.17422 1.30016 0.94766 0.87879 1.58881 1.06526 1.21624 1.29162 1.22485 0.86621 1.01080 1.01356 1.21797 0.99124 0.92334 0.93618 1.20539 0.83091 0.82107 0.90595 1.90455 1.43895 1.62823 1.52064 1.41939 1.42654 1.23847 1.12897 1.19662 1.27495 1.08370 0.89998 0.89849 1.26017 0.95663 0.96695 1.03109 1.69688 1.29957 1.21101 1.35753 0.84953 0.78718 0.77350 0.77488 1.19709 1.20063 1.19564 1.20824 0.79479 0.83918 0.89400 1.85127 1.78407 1.22715 1.38071 1.69397 1.36202 1.09550 1.28361 1.17206 0.79287 0.83978 0.82672 1.90949 1.58652 1.66100 1.30620 0.91512 0.93809 0.92513 0.89265 0.91530 0.93538 0.90801 0.88201 0.85727 0.74308 0.72423 0.90869 0.91594 0.94695 0.88641 0.90965 0.77317 0.91512 0.71587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.91 71.98 0.71 -0.95 16 2 C -0.11 -1.07 5.93 30.59 0.18 -0.89 16 3 C -0.13 -1.79 5.54 30.59 0.17 -1.62 16 4 C 0.09 1.21 4.93 86.38 0.43 1.64 16 5 N -0.54 -11.48 2.61 -653.95 -1.71 -13.19 16 6 C 0.54 10.86 7.54 131.95 1.00 11.85 16 7 N -0.79 -9.94 8.86 -54.10 -0.48 -10.42 16 8 C -0.19 -4.91 4.75 38.13 0.18 -4.73 16 9 N -0.44 -12.76 3.69 -722.32 -2.67 -15.43 16 10 C 0.03 0.95 8.97 127.69 1.14 2.09 16 11 C 0.06 2.07 4.98 85.56 0.43 2.50 16 12 C 0.45 20.00 7.47 87.66 0.66 20.65 16 13 O -0.61 -30.26 13.91 -3.08 -0.04 -30.30 16 14 N -0.58 -28.48 5.29 -307.00 -1.62 -30.10 16 15 C -0.33 -17.79 9.68 84.04 0.81 -16.97 16 16 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 17 C -0.02 -0.81 5.50 84.93 0.47 -0.34 16 18 N -0.92 -49.35 13.05 21.66 0.28 -49.07 16 19 Si 0.99 41.93 29.55 68.60 2.03 43.96 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 21 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 23 C 0.46 12.34 7.44 84.96 0.63 12.98 16 24 O -0.45 -10.45 9.58 -86.51 -0.83 -11.28 16 25 N -0.67 -20.73 10.37 -439.10 -4.55 -25.29 16 26 C 0.67 20.57 8.33 179.71 1.50 22.07 16 27 O -0.58 -21.58 16.72 -5.50 -0.09 -21.67 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.10 1.66 7.38 -2.39 -0.02 1.64 16 36 H 0.12 0.68 6.43 -2.39 -0.02 0.67 16 37 H 0.42 2.29 6.76 -92.71 -0.63 1.67 16 38 H 0.44 6.66 8.12 -92.71 -0.75 5.91 16 39 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.07 2.43 5.83 -2.38 -0.01 2.42 16 41 H 0.03 1.01 6.31 -2.39 -0.02 1.00 16 42 H 0.10 2.99 8.06 -2.39 -0.02 2.97 16 43 H 0.07 2.38 6.30 -2.39 -0.02 2.36 16 44 H 0.39 18.93 7.90 -92.70 -0.73 18.20 16 45 H 0.28 13.86 8.31 -92.70 -0.77 13.09 16 46 H 0.42 6.73 8.98 -74.06 -0.67 6.07 16 Total: -1.00 -75.89 378.60 -3.08 -78.97 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: -1.70 Total: 35.55 kcal Atomic # 6 Polarization: 39.97 SS G_CDS: 8.30 Total: 48.28 kcal Atomic # 7 Polarization: -132.75 SS G_CDS: -10.75 Total: -143.50 kcal Atomic # 8 Polarization: -62.29 SS G_CDS: -0.96 Total: -63.26 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -75.89 -3.08 -78.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342195142.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.349 kcal (2) G-P(sol) polarization free energy of solvation -75.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds