Wall clock time and date at job start Tue Mar 31 2020 22:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47120 * 2 1 4 4 H 1.09003 * 109.47102 * 179.45661 * 3 2 1 5 5 N 1.46903 * 109.47543 * 59.45830 * 3 2 1 6 6 C 1.39210 * 110.99900 * 66.71682 * 5 3 2 7 7 C 1.36170 * 126.22345 * 25.60456 * 6 5 3 8 8 N 1.48037 * 126.09071 * 359.97438 * 7 6 5 9 9 O 1.21794 * 120.00124 * 89.99496 * 8 7 6 10 10 O 1.21801 * 119.99855 * 269.99971 * 8 7 6 11 11 C 1.39773 * 107.81728 * 179.84716 * 7 6 5 12 12 C 1.50692 * 125.84123 * 180.16295 * 11 7 6 13 13 N 1.30841 * 108.31896 * 0.42227 * 11 7 6 14 14 N 1.35254 * 126.22106 * 205.91528 * 6 5 3 15 15 C 1.46503 * 126.03947 * 0.02562 * 14 6 5 16 16 C 1.50699 * 109.47260 * 299.45577 * 3 2 1 17 17 O 1.21292 * 119.99790 * 95.32566 * 16 3 2 18 18 N 1.34777 * 120.00205 * 275.32434 * 16 3 2 19 19 C 1.37099 * 119.99543 * 358.58376 * 18 16 3 20 20 H 1.07997 * 120.00480 * 11.98969 * 19 18 16 21 21 C 1.38954 * 119.99443 * 192.26446 * 19 18 16 22 22 N 1.31408 * 119.99985 * 21.74964 * 21 19 18 23 23 Si 1.86800 * 119.99798 * 201.74350 * 21 19 18 24 24 H 1.48503 * 109.46984 * 60.00231 * 23 21 19 25 25 H 1.48499 * 109.47030 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47061 * 300.00124 * 23 21 19 27 27 C 1.46498 * 119.99813 * 178.58208 * 18 16 3 28 28 C 1.52995 * 109.47347 * 83.39989 * 27 18 16 29 29 H 1.08999 * 109.47103 * 305.37832 * 1 2 3 30 30 H 1.09003 * 109.46815 * 65.37220 * 1 2 3 31 31 H 1.08997 * 109.47326 * 185.37178 * 1 2 3 32 32 H 1.09001 * 109.47295 * 239.99655 * 2 1 3 33 33 H 1.09008 * 109.46566 * 119.99826 * 2 1 3 34 34 H 1.00888 * 111.00419 * 190.67398 * 5 3 2 35 35 H 1.08992 * 109.47519 * 270.32849 * 12 11 7 36 36 H 1.09003 * 109.46847 * 30.32822 * 12 11 7 37 37 H 1.08998 * 109.47120 * 150.32557 * 12 11 7 38 38 H 1.08997 * 109.47365 * 94.87896 * 15 14 6 39 39 H 1.09003 * 109.46871 * 214.87723 * 15 14 6 40 40 H 1.09002 * 109.47482 * 334.87566 * 15 14 6 41 41 H 0.97001 * 119.99817 * 179.97438 * 22 21 19 42 42 H 1.09000 * 109.46505 * 203.39867 * 27 18 16 43 43 H 1.08996 * 109.46998 * 323.39499 * 27 18 16 44 44 H 1.09002 * 109.46853 * 299.99817 * 28 27 18 45 45 H 1.09007 * 109.47287 * 59.99335 * 28 27 18 46 46 H 1.08994 * 109.47749 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1300 1.4425 0.0097 5 7 1.5398 2.1388 1.1928 6 6 2.0957 1.6049 2.3520 7 6 3.2894 0.9566 2.4473 8 7 4.2295 0.6925 1.3347 9 8 5.0995 1.5018 1.0674 10 8 4.1329 -0.3342 0.6865 11 6 3.4703 0.5876 3.7832 12 6 4.6600 -0.1496 4.3417 13 7 2.4273 0.9868 4.4650 14 7 1.5458 1.6307 3.5875 15 6 0.2558 2.2264 3.9444 16 6 1.5488 2.1490 -1.2371 17 8 0.5382 2.8182 -1.1923 18 7 2.2324 2.0373 -2.3933 19 6 3.3904 1.3046 -2.4369 20 1 3.6546 0.6625 -1.6097 21 6 4.2270 1.3928 -3.5428 22 7 4.1671 2.4433 -4.3299 23 14 5.4368 0.0178 -3.9106 24 1 4.6948 -1.2510 -4.1223 25 1 6.2076 0.3513 -5.1353 26 1 6.3701 -0.1395 -2.7664 27 6 1.7379 2.6987 -3.6034 28 6 2.1904 4.1602 -3.6069 29 1 -0.3633 0.5950 0.8379 30 1 -0.3633 0.4283 -0.9342 31 1 -0.3634 -1.0231 0.0962 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8901 34 1 1.7137 3.1307 1.1320 35 1 4.4807 -1.2232 4.2870 36 1 5.5478 0.1006 3.7609 37 1 4.8122 0.1409 5.3812 38 1 -0.5165 1.4574 3.9281 39 1 0.3186 2.6571 4.9438 40 1 0.0055 3.0080 3.2271 41 1 4.7514 2.5050 -5.1017 42 1 2.1367 2.1927 -4.4826 43 1 0.6490 2.6554 -3.6219 44 1 1.7917 4.6661 -2.7276 45 1 3.2795 4.2034 -3.5883 46 1 1.8230 4.6522 -4.5074 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344176455.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:39 Heat of formation + Delta-G solvation = 78.359985 kcal Electronic energy + Delta-G solvation = -32678.047171 eV Core-core repulsion = 28416.828080 eV Total energy + Delta-G solvation = -4261.219091 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.55049 -41.11317 -39.17608 -36.59136 -36.03813 -34.90773 -34.36634 -32.38399 -31.54461 -30.09896 -29.90698 -29.60462 -27.21318 -25.71867 -24.79663 -24.58688 -22.60565 -21.50366 -20.82377 -20.32662 -19.08469 -18.48790 -18.36987 -17.53931 -17.34083 -16.60913 -15.99574 -15.71899 -15.04724 -14.92204 -14.60303 -14.13774 -13.90670 -13.87600 -13.70523 -13.12409 -13.05033 -13.02214 -12.68790 -12.55138 -12.49116 -12.22779 -11.71687 -11.56492 -11.54219 -11.20529 -11.13503 -11.00797 -10.92053 -10.79883 -10.68459 -10.58879 -10.45032 -10.34296 -10.24253 -9.95478 -9.68823 -9.33638 -8.94274 -8.69028 -8.34964 -7.80332 -6.38576 -3.89997 0.90347 1.24065 1.42646 1.93073 2.19885 3.19534 3.27848 3.33502 3.47687 3.78586 4.07236 4.16043 4.34646 4.65450 4.85250 4.87159 4.95337 5.00107 5.23552 5.24277 5.27166 5.33476 5.46637 5.51011 5.64046 5.82785 5.91846 5.96618 6.16022 6.27738 6.36907 6.47889 6.57994 6.67369 6.69467 6.71544 6.80348 6.82240 6.95988 6.98779 7.18463 7.34540 7.38717 7.70120 7.80978 8.00134 8.39987 9.05078 9.44237 9.83258 10.58359 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012978 B = 0.005236 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.992119 B = 5346.117394 C = 6630.573243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 C 0.074 3.926 4 H 0.075 0.925 5 N -0.595 5.595 6 C 0.364 3.636 7 C -0.235 4.235 8 N 0.063 4.937 9 O -0.147 6.147 10 O -0.133 6.133 11 C 0.139 3.861 12 C -0.085 4.085 13 N -0.275 5.275 14 N -0.351 5.351 15 C 0.104 3.896 16 C 0.453 3.547 17 O -0.598 6.598 18 N -0.422 5.422 19 C -0.345 4.345 20 H 0.106 0.894 21 C 0.046 3.954 22 N -0.853 5.853 23 Si 0.914 3.086 24 H -0.271 1.271 25 H -0.285 1.285 26 H -0.264 1.264 27 C 0.139 3.861 28 C -0.144 4.144 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.379 0.621 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.270 0.730 42 H 0.093 0.907 43 H 0.036 0.964 44 H 0.025 0.975 45 H 0.092 0.908 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.400 -2.773 13.143 13.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C -0.037 4.037 4 H 0.092 0.908 5 N -0.232 5.232 6 C 0.134 3.866 7 C -0.333 4.333 8 N 0.588 4.412 9 O -0.365 6.365 10 O -0.355 6.355 11 C -0.029 4.029 12 C -0.143 4.143 13 N -0.097 5.097 14 N -0.134 5.134 15 C -0.036 4.036 16 C 0.240 3.760 17 O -0.485 6.485 18 N -0.139 5.139 19 C -0.472 4.472 20 H 0.124 0.876 21 C -0.160 4.160 22 N -0.491 5.491 23 Si 0.740 3.260 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.188 1.188 27 C 0.016 3.984 28 C -0.202 4.202 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.211 0.789 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.080 0.920 42 H 0.111 0.889 43 H 0.054 0.946 44 H 0.044 0.956 45 H 0.110 0.890 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.558 -2.381 14.682 15.557 hybrid contribution 1.942 -0.313 -1.396 2.412 sum -2.616 -2.694 13.286 13.807 Atomic orbital electron populations 1.21616 0.94979 0.99981 1.02875 1.21541 0.96864 0.92771 1.03530 1.21896 0.98835 0.95468 0.87460 0.90767 1.56787 1.58333 1.09622 0.98490 1.18586 0.87002 0.94536 0.86516 1.20633 0.96268 1.26895 0.89454 1.42469 0.99654 0.99780 0.99256 1.94596 1.27482 1.42442 1.71961 1.94562 1.77036 1.15584 1.48308 1.21875 0.96181 0.96825 0.88052 1.20395 0.91855 0.99746 1.02321 1.77560 1.00894 1.16991 1.14296 1.48268 1.17280 1.44249 1.03611 1.22052 0.79037 0.99158 1.03331 1.19172 0.86978 0.85977 0.83908 1.90543 1.27640 1.45680 1.84644 1.43789 1.20777 1.42707 1.06627 1.19808 0.98517 1.22696 1.06213 0.87628 1.25199 0.97659 0.96693 0.96492 1.70110 1.37910 1.24826 1.16215 0.86153 0.80245 0.81304 0.78284 1.19676 1.21044 1.18849 1.21172 0.94951 0.93788 0.88504 1.22026 1.04700 0.95552 0.97900 0.92540 0.92175 0.93820 0.89303 0.91805 0.78901 0.89165 0.90103 0.89312 0.89732 0.88896 0.88108 0.91970 0.88861 0.94582 0.95561 0.88984 0.94812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.41 37.16 0.35 -2.06 16 2 C -0.11 -2.05 3.96 -26.73 -0.11 -2.15 16 3 C 0.07 1.49 1.37 -68.87 -0.09 1.40 16 4 H 0.08 1.62 2.64 -51.93 -0.14 1.49 16 5 N -0.59 -10.21 4.95 -54.83 -0.27 -10.48 16 6 C 0.36 5.75 6.45 -153.40 -0.99 4.76 16 7 C -0.24 -3.90 5.50 -80.11 -0.44 -4.34 16 8 N 0.06 1.18 2.35 33.88 0.08 1.26 16 9 O -0.15 -2.98 18.66 -29.46 -0.55 -3.53 16 10 O -0.13 -2.61 15.02 -29.46 -0.44 -3.05 16 11 C 0.14 1.97 7.21 -82.44 -0.59 1.37 16 12 C -0.08 -0.89 10.44 36.00 0.38 -0.51 16 13 N -0.27 -3.80 12.56 33.65 0.42 -3.38 16 14 N -0.35 -4.67 4.02 -67.24 -0.27 -4.94 16 15 C 0.10 0.94 11.43 59.85 0.68 1.62 16 16 C 0.45 10.63 5.69 -10.99 -0.06 10.56 16 17 O -0.60 -14.91 15.77 5.55 0.09 -14.82 16 18 N -0.42 -10.46 2.64 -114.82 -0.30 -10.77 16 19 C -0.35 -8.69 8.81 -14.93 -0.13 -8.83 16 20 H 0.11 2.64 4.95 -52.49 -0.26 2.38 16 21 C 0.05 1.13 4.93 -17.47 -0.09 1.04 16 22 N -0.85 -21.30 8.45 55.50 0.47 -20.83 16 23 Si 0.91 19.73 29.61 -169.99 -5.03 14.70 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.26 -5.77 7.11 56.52 0.40 -5.36 16 27 C 0.14 3.34 5.22 -4.05 -0.02 3.32 16 28 C -0.14 -3.31 9.68 37.15 0.36 -2.95 16 29 H 0.06 0.97 7.42 -51.93 -0.39 0.58 16 30 H 0.06 1.18 7.17 -51.93 -0.37 0.81 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 1.79 7.46 -51.93 -0.39 1.40 16 33 H 0.06 1.16 5.64 -51.92 -0.29 0.87 16 34 H 0.38 6.44 8.60 -39.30 -0.34 6.11 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.86 7.99 -51.93 -0.41 0.44 16 41 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 42 H 0.09 2.32 5.99 -51.93 -0.31 2.01 16 43 H 0.04 0.86 7.65 -51.93 -0.40 0.46 16 44 H 0.03 0.60 8.10 -51.93 -0.42 0.18 16 45 H 0.09 2.30 6.15 -51.93 -0.32 1.98 16 46 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 370.51 15.07 5.58 5.58 Total: -1.00 -29.42 370.51 -7.11 -36.53 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -6.13 Total: 10.50 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -0.76 Total: 3.23 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.13 Total: -49.14 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.90 Total: -21.41 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.42 -7.11 -36.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344176455.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.893 kcal (2) G-P(sol) polarization free energy of solvation -29.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds