Wall clock time and date at job start Tue Mar 31 2020 22:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47120 * 2 1 4 4 H 1.09003 * 109.47102 * 179.45661 * 3 2 1 5 5 N 1.46903 * 109.47543 * 59.45830 * 3 2 1 6 6 C 1.39210 * 110.99900 * 66.71682 * 5 3 2 7 7 C 1.36170 * 126.22345 * 25.60456 * 6 5 3 8 8 N 1.48037 * 126.09071 * 359.97438 * 7 6 5 9 9 O 1.21794 * 120.00124 * 89.99496 * 8 7 6 10 10 O 1.21801 * 119.99855 * 269.99971 * 8 7 6 11 11 C 1.39773 * 107.81728 * 179.84716 * 7 6 5 12 12 C 1.50692 * 125.84123 * 180.16295 * 11 7 6 13 13 N 1.30841 * 108.31896 * 0.42227 * 11 7 6 14 14 N 1.35254 * 126.22106 * 205.91528 * 6 5 3 15 15 C 1.46503 * 126.03947 * 0.02562 * 14 6 5 16 16 C 1.50699 * 109.47260 * 299.45577 * 3 2 1 17 17 O 1.21292 * 119.99790 * 95.32566 * 16 3 2 18 18 N 1.34777 * 120.00205 * 275.32434 * 16 3 2 19 19 C 1.37099 * 119.99543 * 358.58376 * 18 16 3 20 20 H 1.07997 * 120.00480 * 11.98969 * 19 18 16 21 21 C 1.38954 * 119.99443 * 192.26446 * 19 18 16 22 22 N 1.31408 * 119.99985 * 21.74964 * 21 19 18 23 23 Si 1.86800 * 119.99798 * 201.74350 * 21 19 18 24 24 H 1.48503 * 109.46984 * 60.00231 * 23 21 19 25 25 H 1.48499 * 109.47030 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47061 * 300.00124 * 23 21 19 27 27 C 1.46498 * 119.99813 * 178.58208 * 18 16 3 28 28 C 1.52995 * 109.47347 * 83.39989 * 27 18 16 29 29 H 1.08999 * 109.47103 * 305.37832 * 1 2 3 30 30 H 1.09003 * 109.46815 * 65.37220 * 1 2 3 31 31 H 1.08997 * 109.47326 * 185.37178 * 1 2 3 32 32 H 1.09001 * 109.47295 * 239.99655 * 2 1 3 33 33 H 1.09008 * 109.46566 * 119.99826 * 2 1 3 34 34 H 1.00888 * 111.00419 * 190.67398 * 5 3 2 35 35 H 1.08992 * 109.47519 * 270.32849 * 12 11 7 36 36 H 1.09003 * 109.46847 * 30.32822 * 12 11 7 37 37 H 1.08998 * 109.47120 * 150.32557 * 12 11 7 38 38 H 1.08997 * 109.47365 * 94.87896 * 15 14 6 39 39 H 1.09003 * 109.46871 * 214.87723 * 15 14 6 40 40 H 1.09002 * 109.47482 * 334.87566 * 15 14 6 41 41 H 0.97001 * 119.99817 * 179.97438 * 22 21 19 42 42 H 1.09000 * 109.46505 * 203.39867 * 27 18 16 43 43 H 1.08996 * 109.46998 * 323.39499 * 27 18 16 44 44 H 1.09002 * 109.46853 * 299.99817 * 28 27 18 45 45 H 1.09007 * 109.47287 * 59.99335 * 28 27 18 46 46 H 1.08994 * 109.47749 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1300 1.4425 0.0097 5 7 1.5398 2.1388 1.1928 6 6 2.0957 1.6049 2.3520 7 6 3.2894 0.9566 2.4473 8 7 4.2295 0.6925 1.3347 9 8 5.0995 1.5018 1.0674 10 8 4.1329 -0.3342 0.6865 11 6 3.4703 0.5876 3.7832 12 6 4.6600 -0.1496 4.3417 13 7 2.4273 0.9868 4.4650 14 7 1.5458 1.6307 3.5875 15 6 0.2558 2.2264 3.9444 16 6 1.5488 2.1490 -1.2371 17 8 0.5382 2.8182 -1.1923 18 7 2.2324 2.0373 -2.3933 19 6 3.3904 1.3046 -2.4369 20 1 3.6546 0.6625 -1.6097 21 6 4.2270 1.3928 -3.5428 22 7 4.1671 2.4433 -4.3299 23 14 5.4368 0.0178 -3.9106 24 1 4.6948 -1.2510 -4.1223 25 1 6.2076 0.3513 -5.1353 26 1 6.3701 -0.1395 -2.7664 27 6 1.7379 2.6987 -3.6034 28 6 2.1904 4.1602 -3.6069 29 1 -0.3633 0.5950 0.8379 30 1 -0.3633 0.4283 -0.9342 31 1 -0.3634 -1.0231 0.0962 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8901 34 1 1.7137 3.1307 1.1320 35 1 4.4807 -1.2232 4.2870 36 1 5.5478 0.1006 3.7609 37 1 4.8122 0.1409 5.3812 38 1 -0.5165 1.4574 3.9281 39 1 0.3186 2.6571 4.9438 40 1 0.0055 3.0080 3.2271 41 1 4.7514 2.5050 -5.1017 42 1 2.1367 2.1927 -4.4826 43 1 0.6490 2.6554 -3.6219 44 1 1.7917 4.6661 -2.7276 45 1 3.2795 4.2034 -3.5883 46 1 1.8230 4.6522 -4.5074 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344176455.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:38 Heat of formation + Delta-G solvation = 61.788341 kcal Electronic energy + Delta-G solvation = -32678.765771 eV Core-core repulsion = 28416.828080 eV Total energy + Delta-G solvation = -4261.937691 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.85801 -42.41553 -40.94153 -38.15563 -37.53168 -36.75505 -35.43154 -33.82357 -33.44873 -31.75901 -31.15969 -30.71262 -28.55520 -27.11213 -26.68540 -25.74484 -24.33226 -23.03631 -22.17886 -21.60889 -20.90323 -19.83714 -19.78007 -19.08204 -18.79155 -18.17235 -17.31370 -17.19562 -16.53060 -16.41455 -16.20477 -15.85093 -15.60260 -14.80720 -14.71447 -14.66983 -14.49665 -14.40738 -14.06244 -13.92888 -13.54662 -13.44144 -13.37225 -13.13983 -12.89279 -12.82096 -12.81690 -12.66887 -12.62933 -12.33976 -12.23248 -12.13712 -12.08826 -12.02922 -11.89015 -11.62039 -11.26271 -10.85388 -10.42644 -10.30305 -9.93807 -9.72060 -8.28019 -5.84975 -0.62231 0.03559 0.18866 0.79269 0.98884 1.45153 1.52371 1.60950 1.90127 2.21105 2.39709 2.89157 3.01946 3.11179 3.21703 3.63857 3.69837 3.93335 4.00077 4.11657 4.29470 4.30522 4.33150 4.44694 4.51482 4.55739 4.59722 4.66736 4.73624 4.79313 4.89954 4.91775 4.93025 5.00137 5.08389 5.14147 5.23765 5.28443 5.34909 5.40892 5.46444 5.65172 5.80588 5.86251 6.05083 6.44116 6.48312 7.12948 7.54383 7.93284 8.69052 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012978 B = 0.005236 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.992119 B = 5346.117394 C = 6630.573243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 C 0.086 3.914 4 H 0.059 0.941 5 N -0.588 5.588 6 C 0.353 3.647 7 C -0.253 4.253 8 N 0.070 4.930 9 O -0.184 6.184 10 O -0.139 6.139 11 C 0.138 3.862 12 C -0.085 4.085 13 N -0.269 5.269 14 N -0.338 5.338 15 C 0.092 3.908 16 C 0.449 3.551 17 O -0.616 6.616 18 N -0.435 5.435 19 C -0.362 4.362 20 H 0.103 0.897 21 C 0.012 3.988 22 N -0.869 5.869 23 Si 0.969 3.031 24 H -0.267 1.267 25 H -0.278 1.278 26 H -0.269 1.269 27 C 0.140 3.860 28 C -0.129 4.129 29 H 0.062 0.938 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.378 0.622 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.105 0.895 41 H 0.273 0.727 42 H 0.085 0.915 43 H 0.034 0.966 44 H 0.015 0.985 45 H 0.073 0.927 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.884 -3.654 14.891 15.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.140 4.140 3 C -0.026 4.026 4 H 0.076 0.924 5 N -0.225 5.225 6 C 0.121 3.879 7 C -0.350 4.350 8 N 0.592 4.408 9 O -0.396 6.396 10 O -0.363 6.363 11 C -0.030 4.030 12 C -0.143 4.143 13 N -0.092 5.092 14 N -0.120 5.120 15 C -0.046 4.046 16 C 0.237 3.763 17 O -0.504 6.504 18 N -0.152 5.152 19 C -0.489 4.489 20 H 0.121 0.879 21 C -0.193 4.193 22 N -0.506 5.506 23 Si 0.793 3.207 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.194 1.194 27 C 0.017 3.983 28 C -0.187 4.187 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.209 0.791 35 H 0.124 0.876 36 H 0.093 0.907 37 H 0.131 0.869 38 H 0.119 0.881 39 H 0.137 0.863 40 H 0.124 0.876 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.052 0.948 44 H 0.035 0.965 45 H 0.092 0.908 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.031 -3.222 16.455 17.506 hybrid contribution 2.001 -0.005 -1.854 2.728 sum -3.029 -3.227 14.601 15.257 Atomic orbital electron populations 1.21529 0.93759 1.01501 1.01650 1.21466 0.97759 0.91672 1.03064 1.21634 0.97758 0.96062 0.87148 0.92392 1.56706 1.58281 1.09353 0.98123 1.18511 0.87254 0.95130 0.86984 1.20863 0.96258 1.28399 0.89509 1.42728 0.99531 0.99141 0.99372 1.94587 1.29044 1.42843 1.73083 1.94533 1.77046 1.15833 1.48919 1.22391 0.97143 0.96617 0.86819 1.20563 0.90093 1.00283 1.03409 1.77582 1.00813 1.16839 1.13994 1.48657 1.17919 1.43045 1.02350 1.22491 0.77412 0.99797 1.04918 1.19682 0.86468 0.85568 0.84572 1.90514 1.28315 1.46381 1.85170 1.43957 1.20989 1.43083 1.07202 1.19926 0.99020 1.23222 1.06712 0.87936 1.25865 0.98961 0.98220 0.96215 1.70175 1.38496 1.25524 1.16386 0.85335 0.78364 0.79075 0.77950 1.19199 1.20273 1.19368 1.21130 0.94639 0.94222 0.88336 1.21857 1.03262 0.95067 0.98510 0.91944 0.94731 0.91254 0.90982 0.90911 0.79117 0.87583 0.90699 0.86870 0.88133 0.86264 0.87646 0.91697 0.89724 0.94812 0.96549 0.90836 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 9.41 71.98 0.68 -3.64 16 2 C -0.10 -3.78 3.96 30.59 0.12 -3.66 16 3 C 0.09 3.46 1.37 44.17 0.06 3.52 16 4 H 0.06 2.59 2.64 -2.39 -0.01 2.58 16 5 N -0.59 -19.90 4.95 -327.38 -1.62 -21.52 16 6 C 0.35 10.72 6.45 131.42 0.85 11.57 16 7 C -0.25 -8.16 5.50 36.26 0.20 -7.96 16 8 N 0.07 2.64 2.35 -46.71 -0.11 2.54 16 9 O -0.18 -7.65 18.66 18.89 0.35 -7.30 16 10 O -0.14 -5.47 15.02 18.89 0.28 -5.19 16 11 C 0.14 3.65 7.21 43.08 0.31 3.96 16 12 C -0.09 -1.60 10.44 71.23 0.74 -0.86 16 13 N -0.27 -6.73 12.56 -47.45 -0.60 -7.33 16 14 N -0.34 -8.18 4.02 -366.63 -1.47 -9.66 16 15 C 0.09 1.38 11.43 127.77 1.46 2.84 16 16 C 0.45 21.41 5.69 87.66 0.50 21.91 16 17 O -0.62 -31.00 15.77 -3.07 -0.05 -31.05 16 18 N -0.44 -22.00 2.64 -635.55 -1.68 -23.68 16 19 C -0.36 -18.55 8.81 84.04 0.74 -17.81 16 20 H 0.10 5.25 4.95 -2.91 -0.01 5.24 16 21 C 0.01 0.58 4.93 84.93 0.42 1.00 16 22 N -0.87 -43.66 8.45 21.66 0.18 -43.47 16 23 Si 0.97 40.57 29.61 68.60 2.03 42.60 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 27 C 0.14 6.83 5.22 86.38 0.45 7.28 16 28 C -0.13 -5.99 9.68 71.98 0.70 -5.29 16 29 H 0.06 2.03 7.42 -2.39 -0.02 2.01 16 30 H 0.03 1.34 7.17 -2.39 -0.02 1.32 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.07 2.93 7.46 -2.39 -0.02 2.91 16 33 H 0.07 2.59 5.64 -2.38 -0.01 2.57 16 34 H 0.38 12.84 8.60 -89.70 -0.77 12.07 16 35 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.11 1.53 7.99 -2.39 -0.02 1.52 16 41 H 0.27 13.00 8.31 -92.71 -0.77 12.23 16 42 H 0.08 4.27 5.99 -2.39 -0.01 4.25 16 43 H 0.03 1.63 7.65 -2.39 -0.02 1.61 16 44 H 0.02 0.74 8.10 -2.39 -0.02 0.72 16 45 H 0.07 3.71 6.15 -2.38 -0.01 3.70 16 46 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -63.36 370.51 4.82 -58.54 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: 0.27 Total: 32.66 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 7.23 Total: 12.86 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -5.30 Total: -103.12 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: 0.59 Total: -43.54 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -63.36 4.82 -58.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344176455.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.324 kcal (2) G-P(sol) polarization free energy of solvation -63.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds