Wall clock time and date at job start Tue Mar 31 2020 22:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46845 * 2 1 4 4 H 1.08998 * 109.46874 * 307.08024 * 3 2 1 5 5 N 1.46896 * 109.46888 * 67.08203 * 3 2 1 6 6 C 1.39213 * 110.99722 * 263.37720 * 5 3 2 7 7 C 1.36177 * 126.21936 * 120.41729 * 6 5 3 8 8 N 1.48034 * 126.09077 * 359.97438 * 7 6 5 9 9 O 1.21803 * 119.99853 * 90.00611 * 8 7 6 10 10 O 1.21798 * 120.00295 * 269.99979 * 8 7 6 11 11 C 1.39772 * 107.81285 * 179.84828 * 7 6 5 12 12 C 1.50694 * 125.84120 * 180.16505 * 11 7 6 13 13 N 1.30848 * 108.32316 * 0.42112 * 11 7 6 14 14 N 1.35251 * 126.22048 * 300.72840 * 6 5 3 15 15 C 1.46489 * 126.04264 * 0.02562 * 14 6 5 16 16 C 1.50701 * 109.46999 * 187.07773 * 3 2 1 17 17 O 1.21275 * 120.00089 * 240.00223 * 16 3 2 18 18 N 1.34780 * 120.00105 * 60.00234 * 16 3 2 19 19 C 1.46494 * 120.00194 * 180.02562 * 18 16 3 20 20 H 1.08997 * 109.47165 * 34.99950 * 19 18 16 21 21 C 1.53001 * 109.46919 * 274.99863 * 19 18 16 22 22 C 1.50698 * 109.47405 * 155.00089 * 19 18 16 23 23 H 1.07998 * 119.99984 * 359.97438 * 22 19 18 24 24 C 1.37877 * 120.00196 * 180.02562 * 22 19 18 25 25 N 1.31513 * 119.99895 * 359.97438 * 24 22 19 26 26 Si 1.86805 * 119.99951 * 179.97438 * 24 22 19 27 27 H 1.48502 * 109.47091 * 59.99943 * 26 24 22 28 28 H 1.48498 * 109.46804 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47084 * 299.99606 * 26 24 22 30 30 H 1.09002 * 109.46739 * 184.66338 * 1 2 3 31 31 H 1.08994 * 109.47009 * 304.66056 * 1 2 3 32 32 H 1.08996 * 109.47137 * 64.66927 * 1 2 3 33 33 H 1.09007 * 109.46935 * 240.00041 * 2 1 3 34 34 H 1.08999 * 109.47142 * 120.00618 * 2 1 3 35 35 H 1.00893 * 111.00187 * 139.42887 * 5 3 2 36 36 H 1.09008 * 109.47016 * 270.32607 * 12 11 7 37 37 H 1.09002 * 109.47225 * 30.32424 * 12 11 7 38 38 H 1.08995 * 109.47390 * 150.32342 * 12 11 7 39 39 H 1.08999 * 109.47266 * 83.17495 * 15 14 6 40 40 H 1.09001 * 109.47427 * 203.17456 * 15 14 6 41 41 H 1.08998 * 109.47694 * 323.17449 * 15 14 6 42 42 H 0.97004 * 119.99344 * 359.97438 * 18 16 3 43 43 H 1.08999 * 109.46714 * 60.00277 * 21 19 18 44 44 H 1.08997 * 109.47272 * 300.00021 * 21 19 18 45 45 H 1.09005 * 109.46842 * 179.97438 * 21 19 18 46 46 H 0.97002 * 119.99883 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5768 1.9916 -0.8199 5 7 1.6946 2.0839 1.2756 6 6 0.5217 2.8248 1.1601 7 6 -0.6222 2.6372 1.8747 8 7 -0.8415 1.6070 2.9149 9 8 -0.5814 1.8522 4.0793 10 8 -1.2822 0.5142 2.6064 11 6 -1.5512 3.5926 1.4532 12 6 -2.9535 3.7529 1.9813 13 7 -0.9971 4.3205 0.5177 14 7 0.3092 3.8579 0.3135 15 6 1.2742 4.3973 -0.6476 16 6 3.5368 1.4462 -0.1751 17 8 4.2460 1.9350 0.6787 18 7 4.0873 0.9063 -1.2805 19 6 5.5423 0.9093 -1.4504 20 1 6.0217 0.7783 -0.4803 21 6 5.9817 2.2418 -2.0606 22 6 5.9436 -0.2188 -2.3655 23 1 5.1902 -0.8729 -2.7788 24 6 7.2728 -0.4165 -2.6742 25 7 8.1903 0.3797 -2.1706 26 14 7.7702 -1.8154 -3.8080 27 1 7.1175 -1.6371 -5.1299 28 1 9.2451 -1.8121 -3.9803 29 1 7.3434 -3.1084 -3.2155 30 1 -0.3633 -1.0243 0.0836 31 1 -0.3633 0.5844 0.8453 32 1 -0.3633 0.4397 -0.9288 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 2.4540 2.6588 1.6086 36 1 -3.6351 3.1360 1.3955 37 1 -2.9866 3.4405 3.0250 38 1 -3.2531 4.7981 1.9052 39 1 1.2543 3.7980 -1.5578 40 1 1.0125 5.4283 -0.8857 41 1 2.2740 4.3671 -0.2145 42 1 3.5200 0.5150 -1.9632 43 1 5.6915 3.0577 -1.3987 44 1 5.5023 2.3728 -3.0307 45 1 7.0645 2.2442 -2.1867 46 1 9.1254 0.2404 -2.3875 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345004120.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:57 Heat of formation + Delta-G solvation = 43.632269 kcal Electronic energy + Delta-G solvation = -30980.765501 eV Core-core repulsion = 26718.040504 eV Total energy + Delta-G solvation = -4262.724997 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.73371 -41.50114 -39.77475 -36.91602 -36.41361 -35.06680 -34.57221 -33.12574 -32.30830 -30.73343 -30.02941 -29.34112 -27.35907 -26.09951 -25.40958 -24.91517 -22.32406 -21.50332 -21.25641 -20.63860 -19.75124 -18.99750 -18.72809 -18.21390 -17.24511 -16.99275 -16.48683 -15.93273 -15.79210 -15.42400 -14.99084 -14.61850 -14.23320 -14.15718 -13.95255 -13.66247 -13.41263 -13.29144 -13.02457 -12.87621 -12.66424 -12.59987 -12.09944 -11.94410 -11.87170 -11.71731 -11.36618 -11.26148 -11.13450 -11.08497 -11.04416 -10.94098 -10.66493 -10.49923 -10.38244 -9.94111 -9.70040 -9.44738 -9.36024 -9.24908 -8.71868 -8.22810 -6.26409 -4.36864 0.60396 0.84297 1.12764 1.64984 1.96710 2.84192 3.04958 3.17109 3.23236 3.23982 3.66450 3.75994 4.22812 4.23416 4.40359 4.50497 4.60828 4.71216 4.79716 4.95001 4.99348 5.05703 5.06851 5.12183 5.14925 5.25708 5.42929 5.50736 5.67156 5.71203 5.97479 6.12011 6.23826 6.34768 6.43265 6.59344 6.65694 6.70904 6.80857 6.91437 7.14021 7.29234 7.51018 7.69496 7.69892 7.95816 8.32888 8.53362 8.76685 9.30980 10.79503 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020122 B = 0.002848 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.177661 B = 9828.423891 C =10351.605902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.109 4.109 3 C 0.060 3.940 4 H 0.080 0.920 5 N -0.596 5.596 6 C 0.339 3.661 7 C -0.167 4.167 8 N 0.062 4.938 9 O -0.141 6.141 10 O -0.133 6.133 11 C 0.129 3.871 12 C -0.085 4.085 13 N -0.263 5.263 14 N -0.373 5.373 15 C 0.085 3.915 16 C 0.497 3.503 17 O -0.546 6.546 18 N -0.695 5.695 19 C 0.265 3.735 20 H 0.051 0.949 21 C -0.147 4.147 22 C -0.539 4.539 23 H 0.062 0.938 24 C 0.068 3.932 25 N -0.882 5.882 26 Si 0.903 3.097 27 H -0.276 1.276 28 H -0.285 1.285 29 H -0.275 1.275 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.387 0.613 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.391 0.609 43 H 0.012 0.988 44 H 0.027 0.973 45 H 0.093 0.907 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.896 6.940 2.611 20.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.148 4.148 3 C -0.051 4.051 4 H 0.098 0.902 5 N -0.240 5.240 6 C 0.113 3.887 7 C -0.262 4.262 8 N 0.593 4.407 9 O -0.363 6.363 10 O -0.356 6.356 11 C -0.039 4.039 12 C -0.144 4.144 13 N -0.087 5.087 14 N -0.158 5.158 15 C -0.055 4.055 16 C 0.280 3.720 17 O -0.425 6.425 18 N -0.342 5.342 19 C 0.163 3.837 20 H 0.069 0.931 21 C -0.206 4.206 22 C -0.577 4.577 23 H 0.080 0.920 24 C -0.135 4.135 25 N -0.519 5.519 26 Si 0.730 3.270 27 H -0.201 1.201 28 H -0.210 1.210 29 H -0.200 1.200 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.220 0.780 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.127 0.873 41 H 0.113 0.887 42 H 0.224 0.776 43 H 0.032 0.968 44 H 0.046 0.954 45 H 0.112 0.888 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.269 8.357 1.984 20.188 hybrid contribution 0.709 -1.075 -0.785 1.509 sum -17.560 7.282 1.198 19.048 Atomic orbital electron populations 1.22051 0.94563 1.03264 1.02096 1.21564 0.96926 0.92360 1.03901 1.21951 0.95256 0.98675 0.89248 0.90247 1.58295 1.04891 1.32123 1.28681 1.18913 0.92578 0.86847 0.90327 1.19963 0.97656 1.02964 1.05614 1.42292 0.97388 1.00284 1.00716 1.94553 1.53303 1.85743 1.02744 1.94494 1.44794 1.09263 1.87036 1.22009 0.97064 0.91077 0.93757 1.20421 0.87735 1.04824 1.01383 1.77572 0.90400 1.21704 1.18992 1.49334 1.11687 1.24446 1.30288 1.22274 0.90113 1.02161 0.90952 1.20195 0.88689 0.79880 0.83276 1.90678 1.62239 1.47302 1.42291 1.46530 1.11326 1.56802 1.19507 1.18839 0.72868 0.94107 0.97841 0.93091 1.22095 1.04778 0.96228 0.97469 1.21130 0.92957 1.13642 1.29987 0.91997 1.24880 0.96207 0.96496 0.95965 1.69874 1.01317 1.37273 1.43480 0.86477 0.77566 0.82141 0.80781 1.20110 1.21030 1.20021 0.91673 0.90825 0.93864 0.90299 0.89963 0.77975 0.89000 0.90010 0.89079 0.89232 0.87324 0.88682 0.77568 0.96845 0.95356 0.88846 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.55 37.16 0.35 -1.62 16 2 C -0.11 -1.41 5.56 -26.73 -0.15 -1.56 16 3 C 0.06 0.80 2.21 -68.86 -0.15 0.65 16 4 H 0.08 0.91 5.49 -51.93 -0.29 0.62 16 5 N -0.60 -8.16 6.23 -54.83 -0.34 -8.50 16 6 C 0.34 4.32 5.34 -153.40 -0.82 3.50 16 7 C -0.17 -2.18 5.48 -80.11 -0.44 -2.62 16 8 N 0.06 0.89 4.38 33.88 0.15 1.03 16 9 O -0.14 -2.14 19.26 -29.46 -0.57 -2.71 16 10 O -0.13 -1.93 16.89 -29.46 -0.50 -2.43 16 11 C 0.13 1.45 7.21 -82.44 -0.59 0.85 16 12 C -0.09 -0.65 10.44 36.00 0.38 -0.27 16 13 N -0.26 -3.04 12.56 33.65 0.42 -2.61 16 14 N -0.37 -4.15 3.94 -67.25 -0.27 -4.41 16 15 C 0.09 0.71 10.03 59.84 0.60 1.31 16 16 C 0.50 8.56 7.16 -10.98 -0.08 8.48 16 17 O -0.55 -11.35 15.11 5.56 0.08 -11.27 16 18 N -0.69 -12.74 4.91 -54.94 -0.27 -13.01 16 19 C 0.26 6.19 2.56 -69.09 -0.18 6.02 16 20 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 21 C -0.15 -3.33 9.26 37.16 0.34 -2.99 16 22 C -0.54 -13.43 8.73 -34.44 -0.30 -13.73 16 23 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 24 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 25 N -0.88 -23.77 11.32 55.43 0.63 -23.15 16 26 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 16 27 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.98 2.31 -51.93 -0.12 0.86 16 32 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.95 7.37 -51.92 -0.38 0.56 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.39 5.57 7.11 -39.30 -0.28 5.29 16 36 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.65 7.21 -51.93 -0.37 0.28 16 40 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.39 6.17 7.88 -40.82 -0.32 5.85 16 43 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 46 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 382.79 15.07 5.77 5.77 Total: -1.00 -30.13 382.79 -7.28 -37.41 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -6.24 Total: 9.40 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -1.13 Total: -0.32 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.32 Total: -50.65 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.98 Total: -16.41 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.13 -7.28 -37.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345004120.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.046 kcal (2) G-P(sol) polarization free energy of solvation -30.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds