Wall clock time and date at job start Tue Mar 31 2020 22:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46845 * 2 1 4 4 H 1.08998 * 109.46874 * 307.08024 * 3 2 1 5 5 N 1.46896 * 109.46888 * 67.08203 * 3 2 1 6 6 C 1.39213 * 110.99722 * 263.37720 * 5 3 2 7 7 C 1.36177 * 126.21936 * 120.41729 * 6 5 3 8 8 N 1.48034 * 126.09077 * 359.97438 * 7 6 5 9 9 O 1.21803 * 119.99853 * 90.00611 * 8 7 6 10 10 O 1.21798 * 120.00295 * 269.99979 * 8 7 6 11 11 C 1.39772 * 107.81285 * 179.84828 * 7 6 5 12 12 C 1.50694 * 125.84120 * 180.16505 * 11 7 6 13 13 N 1.30848 * 108.32316 * 0.42112 * 11 7 6 14 14 N 1.35251 * 126.22048 * 300.72840 * 6 5 3 15 15 C 1.46489 * 126.04264 * 0.02562 * 14 6 5 16 16 C 1.50701 * 109.46999 * 187.07773 * 3 2 1 17 17 O 1.21275 * 120.00089 * 240.00223 * 16 3 2 18 18 N 1.34780 * 120.00105 * 60.00234 * 16 3 2 19 19 C 1.46494 * 120.00194 * 180.02562 * 18 16 3 20 20 H 1.08997 * 109.47165 * 34.99950 * 19 18 16 21 21 C 1.53001 * 109.46919 * 274.99863 * 19 18 16 22 22 C 1.50698 * 109.47405 * 155.00089 * 19 18 16 23 23 H 1.07998 * 119.99984 * 359.97438 * 22 19 18 24 24 C 1.37877 * 120.00196 * 180.02562 * 22 19 18 25 25 N 1.31513 * 119.99895 * 359.97438 * 24 22 19 26 26 Si 1.86805 * 119.99951 * 179.97438 * 24 22 19 27 27 H 1.48502 * 109.47091 * 59.99943 * 26 24 22 28 28 H 1.48498 * 109.46804 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47084 * 299.99606 * 26 24 22 30 30 H 1.09002 * 109.46739 * 184.66338 * 1 2 3 31 31 H 1.08994 * 109.47009 * 304.66056 * 1 2 3 32 32 H 1.08996 * 109.47137 * 64.66927 * 1 2 3 33 33 H 1.09007 * 109.46935 * 240.00041 * 2 1 3 34 34 H 1.08999 * 109.47142 * 120.00618 * 2 1 3 35 35 H 1.00893 * 111.00187 * 139.42887 * 5 3 2 36 36 H 1.09008 * 109.47016 * 270.32607 * 12 11 7 37 37 H 1.09002 * 109.47225 * 30.32424 * 12 11 7 38 38 H 1.08995 * 109.47390 * 150.32342 * 12 11 7 39 39 H 1.08999 * 109.47266 * 83.17495 * 15 14 6 40 40 H 1.09001 * 109.47427 * 203.17456 * 15 14 6 41 41 H 1.08998 * 109.47694 * 323.17449 * 15 14 6 42 42 H 0.97004 * 119.99344 * 359.97438 * 18 16 3 43 43 H 1.08999 * 109.46714 * 60.00277 * 21 19 18 44 44 H 1.08997 * 109.47272 * 300.00021 * 21 19 18 45 45 H 1.09005 * 109.46842 * 179.97438 * 21 19 18 46 46 H 0.97002 * 119.99883 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5768 1.9916 -0.8199 5 7 1.6946 2.0839 1.2756 6 6 0.5217 2.8248 1.1601 7 6 -0.6222 2.6372 1.8747 8 7 -0.8415 1.6070 2.9149 9 8 -0.5814 1.8522 4.0793 10 8 -1.2822 0.5142 2.6064 11 6 -1.5512 3.5926 1.4532 12 6 -2.9535 3.7529 1.9813 13 7 -0.9971 4.3205 0.5177 14 7 0.3092 3.8579 0.3135 15 6 1.2742 4.3973 -0.6476 16 6 3.5368 1.4462 -0.1751 17 8 4.2460 1.9350 0.6787 18 7 4.0873 0.9063 -1.2805 19 6 5.5423 0.9093 -1.4504 20 1 6.0217 0.7783 -0.4803 21 6 5.9817 2.2418 -2.0606 22 6 5.9436 -0.2188 -2.3655 23 1 5.1902 -0.8729 -2.7788 24 6 7.2728 -0.4165 -2.6742 25 7 8.1903 0.3797 -2.1706 26 14 7.7702 -1.8154 -3.8080 27 1 7.1175 -1.6371 -5.1299 28 1 9.2451 -1.8121 -3.9803 29 1 7.3434 -3.1084 -3.2155 30 1 -0.3633 -1.0243 0.0836 31 1 -0.3633 0.5844 0.8453 32 1 -0.3633 0.4397 -0.9288 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 2.4540 2.6588 1.6086 36 1 -3.6351 3.1360 1.3955 37 1 -2.9866 3.4405 3.0250 38 1 -3.2531 4.7981 1.9052 39 1 1.2543 3.7980 -1.5578 40 1 1.0125 5.4283 -0.8857 41 1 2.2740 4.3671 -0.2145 42 1 3.5200 0.5150 -1.9632 43 1 5.6915 3.0577 -1.3987 44 1 5.5023 2.3728 -3.0307 45 1 7.0645 2.2442 -2.1867 46 1 9.1254 0.2404 -2.3875 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345004120.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:56 Heat of formation + Delta-G solvation = 23.871275 kcal Electronic energy + Delta-G solvation = -30981.622402 eV Core-core repulsion = 26718.040504 eV Total energy + Delta-G solvation = -4263.581898 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.70511 -42.54819 -41.15662 -38.12236 -37.53452 -36.75876 -35.43481 -34.58186 -33.68234 -31.64847 -31.02617 -30.79808 -28.40503 -27.39016 -27.09482 -25.82849 -23.64180 -22.77887 -22.30910 -21.69790 -21.23379 -20.03156 -19.83649 -19.50201 -18.38138 -18.20060 -17.77142 -17.21505 -17.06559 -16.78882 -16.34556 -15.87900 -15.57418 -15.07004 -14.83632 -14.73079 -14.58386 -14.38669 -14.18676 -13.98513 -13.66478 -13.53999 -13.39082 -13.18067 -13.04418 -12.90912 -12.88547 -12.80994 -12.72270 -12.43609 -12.29899 -12.23449 -12.18924 -12.09058 -11.70749 -11.16176 -11.03303 -10.72707 -10.62764 -10.59997 -10.38480 -9.90533 -8.20800 -6.38057 -0.53182 -0.11135 0.17174 0.77512 1.06098 1.43537 1.45876 1.47394 1.53594 1.93433 2.29877 2.46137 2.92153 3.10623 3.37895 3.41006 3.61755 3.64595 3.74296 3.94404 4.00549 4.16695 4.35609 4.37541 4.39920 4.52020 4.56035 4.67641 4.70762 4.72752 4.86657 4.97284 5.01820 5.04094 5.10463 5.22916 5.26845 5.38824 5.41699 5.50432 5.61789 5.67717 5.83040 5.92987 6.05947 6.54855 6.67508 6.74021 7.21121 7.37763 8.84870 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020122 B = 0.002848 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.177661 B = 9828.423891 C =10351.605902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.108 4.108 3 C 0.078 3.922 4 H 0.107 0.893 5 N -0.605 5.605 6 C 0.331 3.669 7 C -0.180 4.180 8 N 0.065 4.935 9 O -0.171 6.171 10 O -0.127 6.127 11 C 0.130 3.870 12 C -0.086 4.086 13 N -0.266 5.266 14 N -0.367 5.367 15 C 0.075 3.925 16 C 0.500 3.500 17 O -0.583 6.583 18 N -0.690 5.690 19 C 0.273 3.727 20 H 0.001 0.999 21 C -0.134 4.134 22 C -0.549 4.549 23 H 0.075 0.925 24 C 0.018 3.982 25 N -0.916 5.916 26 Si 0.968 3.032 27 H -0.263 1.263 28 H -0.288 1.288 29 H -0.272 1.272 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.381 0.619 36 H 0.108 0.892 37 H 0.080 0.920 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.129 0.871 41 H 0.089 0.911 42 H 0.407 0.593 43 H 0.017 0.983 44 H 0.044 0.956 45 H 0.065 0.935 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.035 6.868 0.732 22.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.147 4.147 3 C -0.033 4.033 4 H 0.124 0.876 5 N -0.248 5.248 6 C 0.104 3.896 7 C -0.276 4.276 8 N 0.594 4.406 9 O -0.388 6.388 10 O -0.355 6.355 11 C -0.038 4.038 12 C -0.144 4.144 13 N -0.090 5.090 14 N -0.150 5.150 15 C -0.064 4.064 16 C 0.285 3.715 17 O -0.465 6.465 18 N -0.338 5.338 19 C 0.169 3.831 20 H 0.018 0.982 21 C -0.193 4.193 22 C -0.587 4.587 23 H 0.093 0.907 24 C -0.183 4.183 25 N -0.554 5.554 26 Si 0.793 3.207 27 H -0.188 1.188 28 H -0.214 1.214 29 H -0.197 1.197 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.214 0.786 36 H 0.126 0.874 37 H 0.099 0.901 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.148 0.852 41 H 0.108 0.892 42 H 0.243 0.757 43 H 0.036 0.964 44 H 0.063 0.937 45 H 0.084 0.916 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.443 8.315 0.124 22.069 hybrid contribution 1.347 -1.025 -0.185 1.703 sum -19.096 7.289 -0.061 20.440 Atomic orbital electron populations 1.22003 0.93451 1.03693 1.02352 1.21589 0.97793 0.91716 1.03587 1.21824 0.91757 0.99543 0.90177 0.87582 1.58264 1.05081 1.32626 1.28836 1.18816 0.92036 0.87548 0.91161 1.20156 0.98596 1.03287 1.05523 1.42463 0.96843 1.00433 1.00828 1.94553 1.54615 1.86025 1.03597 1.94469 1.44217 1.09770 1.87008 1.22535 0.98071 0.90003 0.93191 1.20594 0.86018 1.06419 1.01375 1.77587 0.90474 1.21709 1.19241 1.49514 1.11926 1.23606 1.30003 1.22566 0.89325 1.03702 0.90766 1.20771 0.90326 0.78363 0.82020 1.90668 1.63769 1.48610 1.43405 1.46196 1.09571 1.57416 1.20598 1.18390 0.75380 0.94287 0.95000 0.98151 1.21899 1.03043 0.96053 0.98294 1.21506 0.93400 1.14057 1.29733 0.90724 1.25732 0.96390 0.98742 0.97417 1.70026 1.01496 1.38967 1.44882 0.85460 0.76902 0.79094 0.79290 1.18758 1.21402 1.19733 0.90973 0.91953 0.92385 0.89028 0.91930 0.78629 0.87360 0.90103 0.87241 0.87647 0.85246 0.89211 0.75688 0.96388 0.93716 0.91601 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 9.55 71.98 0.69 -2.78 16 2 C -0.11 -2.63 5.56 30.60 0.17 -2.46 16 3 C 0.08 1.97 2.21 44.17 0.10 2.06 16 4 H 0.11 2.13 5.49 -2.39 -0.01 2.11 16 5 N -0.61 -16.23 6.23 -327.37 -2.04 -18.26 16 6 C 0.33 8.01 5.34 131.43 0.70 8.71 16 7 C -0.18 -4.49 5.48 36.26 0.20 -4.30 16 8 N 0.07 1.83 4.38 -46.71 -0.20 1.62 16 9 O -0.17 -5.28 19.26 18.88 0.36 -4.92 16 10 O -0.13 -3.60 16.89 18.89 0.32 -3.28 16 11 C 0.13 2.66 7.21 43.07 0.31 2.97 16 12 C -0.09 -1.12 10.44 71.23 0.74 -0.37 16 13 N -0.27 -5.52 12.56 -47.44 -0.60 -6.12 16 14 N -0.37 -7.40 3.94 -366.67 -1.45 -8.84 16 15 C 0.08 1.08 10.03 127.77 1.28 2.36 16 16 C 0.50 17.04 7.16 87.66 0.63 17.67 16 17 O -0.58 -24.78 15.11 -3.02 -0.05 -24.82 16 18 N -0.69 -24.74 4.91 -446.11 -2.19 -26.94 16 19 C 0.27 12.88 2.56 44.25 0.11 13.00 16 20 H 0.00 0.03 7.58 -2.39 -0.02 0.02 16 21 C -0.13 -6.11 9.26 71.98 0.67 -5.45 16 22 C -0.55 -27.10 8.73 25.60 0.22 -26.88 16 23 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 24 C 0.02 0.91 5.30 84.65 0.45 1.36 16 25 N -0.92 -50.25 11.32 21.45 0.24 -50.01 16 26 Si 0.97 40.17 29.54 68.60 2.03 42.19 16 27 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 28 H -0.29 -12.03 7.11 99.48 0.71 -11.33 16 29 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.54 2.31 -2.39 -0.01 1.54 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.09 1.98 7.37 -2.38 -0.02 1.96 16 34 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.38 11.08 7.11 -89.70 -0.64 10.44 16 36 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.11 1.19 7.21 -2.39 -0.02 1.17 16 40 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.41 12.01 7.88 -92.71 -0.73 11.28 16 43 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.07 3.39 6.07 -2.38 -0.01 3.38 16 46 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -66.09 382.79 2.38 -63.71 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: -0.32 Total: 29.78 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 6.27 Total: 5.90 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -6.23 Total: -108.55 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: 0.64 Total: -33.02 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.19 kcal Total: -66.09 2.38 -63.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345004120.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.577 kcal (2) G-P(sol) polarization free energy of solvation -66.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds