Wall clock time and date at job start Tue Mar 31 2020 22:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46398 * 2 1 4 4 H 1.08997 * 109.47247 * 305.56037 * 3 2 1 5 5 N 1.46901 * 109.47215 * 65.56712 * 3 2 1 6 6 C 1.39207 * 110.99582 * 267.68872 * 5 3 2 7 7 C 1.36175 * 126.22320 * 125.13999 * 6 5 3 8 8 N 1.48033 * 126.09157 * 359.96862 * 7 6 5 9 9 O 1.21798 * 119.99593 * 90.00573 * 8 7 6 10 10 O 1.21792 * 120.00483 * 269.72986 * 8 7 6 11 11 C 1.39775 * 107.81534 * 180.23792 * 7 6 5 12 12 C 1.50693 * 125.84016 * 179.73016 * 11 7 6 13 13 N 1.30845 * 108.32105 * 359.55200 * 11 7 6 14 14 N 1.35258 * 126.22100 * 305.10597 * 6 5 3 15 15 C 1.46504 * 126.03854 * 0.04733 * 14 6 5 16 16 C 1.50702 * 109.46555 * 185.55886 * 3 2 1 17 17 O 1.21278 * 120.00374 * 239.99688 * 16 3 2 18 18 N 1.34778 * 119.99878 * 60.00815 * 16 3 2 19 19 C 1.46499 * 119.99918 * 179.97438 * 18 16 3 20 20 H 1.09002 * 109.47013 * 324.99263 * 19 18 16 21 21 C 1.52997 * 109.47338 * 84.99522 * 19 18 16 22 22 C 1.50710 * 109.47046 * 204.99883 * 19 18 16 23 23 H 1.07997 * 119.99734 * 359.97438 * 22 19 18 24 24 C 1.37872 * 120.00019 * 179.97438 * 22 19 18 25 25 N 1.31511 * 120.00030 * 359.97438 * 24 22 19 26 26 Si 1.86803 * 119.99914 * 179.97438 * 24 22 19 27 27 H 1.48498 * 109.46876 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46873 * 120.00108 * 26 24 22 29 29 H 1.48497 * 109.47307 * 239.99955 * 26 24 22 30 30 H 1.09000 * 109.46982 * 61.20098 * 1 2 3 31 31 H 1.09000 * 109.46630 * 181.19736 * 1 2 3 32 32 H 1.08994 * 109.47141 * 301.19379 * 1 2 3 33 33 H 1.08997 * 109.47161 * 240.00742 * 2 1 3 34 34 H 1.08997 * 109.47110 * 119.99692 * 2 1 3 35 35 H 1.00898 * 111.00115 * 31.63780 * 5 3 2 36 36 H 1.09003 * 109.47020 * 90.00361 * 12 11 7 37 37 H 1.08998 * 109.47301 * 210.00167 * 12 11 7 38 38 H 1.08995 * 109.47122 * 330.00366 * 12 11 7 39 39 H 1.08997 * 109.47034 * 86.78000 * 15 14 6 40 40 H 1.08997 * 109.46883 * 206.77982 * 15 14 6 41 41 H 1.08995 * 109.47135 * 326.77782 * 15 14 6 42 42 H 0.97004 * 119.99994 * 359.97438 * 18 16 3 43 43 H 1.09003 * 109.47041 * 179.97438 * 21 19 18 44 44 H 1.08994 * 109.47119 * 299.99599 * 21 19 18 45 45 H 1.09005 * 109.46868 * 60.00214 * 21 19 18 46 46 H 0.97001 * 120.00353 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5975 1.9843 -0.8360 5 7 1.6629 2.0952 1.2610 6 6 0.4435 2.7549 1.1361 7 6 -0.6524 2.5765 1.9244 8 7 -0.7607 1.6442 3.0692 9 8 -0.4616 2.0179 4.1892 10 8 -1.1535 0.5051 2.8919 11 6 -1.6589 3.4259 1.4563 12 6 -3.0460 3.5513 2.0315 13 7 -1.1893 4.0964 0.4355 14 7 0.1320 3.6902 0.2100 15 6 1.0196 4.1896 -0.8431 16 6 3.5406 1.4449 -0.1376 17 8 4.2284 1.9413 0.7292 18 7 4.1185 0.8954 -1.2242 19 6 5.5773 0.8981 -1.3583 20 1 5.9799 1.8157 -0.9293 21 6 6.1597 -0.3085 -0.6195 22 6 5.9479 0.8207 -2.8171 23 1 5.1740 0.7738 -3.5689 24 6 7.2747 0.8099 -3.1917 25 7 8.2169 0.8675 -2.2761 26 14 7.7339 0.7134 -4.9998 27 1 6.4985 0.6594 -5.8220 28 1 8.5252 1.9130 -5.3742 29 1 8.5431 -0.5083 -5.2405 30 1 -0.3633 0.4951 -0.9006 31 1 -0.3632 -1.0275 0.0215 32 1 -0.3633 0.5322 0.8790 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6381 1.4299 2.0191 36 1 -3.0510 4.3209 2.8035 37 1 -3.7440 3.8256 1.2405 38 1 -3.3464 2.5982 2.4667 39 1 0.9471 3.5419 -1.7168 40 1 0.7249 5.2028 -1.1164 41 1 2.0471 4.1956 -0.4796 42 1 3.5684 0.4981 -1.9174 43 1 7.2451 -0.3067 -0.7196 44 1 5.8917 -0.2526 0.4355 45 1 5.7571 -1.2262 -1.0485 46 1 9.1504 0.8595 -2.5395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345004122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:03 Heat of formation + Delta-G solvation = 44.520298 kcal Electronic energy + Delta-G solvation = -30965.877195 eV Core-core repulsion = 26703.190705 eV Total energy + Delta-G solvation = -4262.686490 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.81948 -41.58544 -39.64235 -37.18403 -36.56922 -34.92983 -34.56693 -33.18531 -32.31961 -30.65580 -29.98349 -29.30978 -27.41441 -26.25887 -25.36262 -24.93080 -22.50380 -21.68451 -21.46412 -20.44833 -19.64825 -19.14923 -18.87378 -17.82512 -17.45548 -16.96780 -16.32734 -15.98399 -15.76285 -15.53378 -15.02351 -14.63087 -14.38751 -14.11781 -14.05910 -13.78868 -13.53206 -13.22140 -12.95936 -12.82747 -12.60875 -12.44208 -12.30860 -12.00660 -11.80613 -11.74829 -11.52388 -11.31546 -11.20295 -11.15938 -11.09613 -11.04630 -10.98769 -10.85674 -10.41637 -10.35736 -9.64241 -9.24778 -9.16996 -8.79227 -8.67663 -8.11665 -6.23982 -4.34338 0.41309 0.97434 1.06286 1.68227 1.89188 2.95725 3.01336 3.15279 3.23681 3.25353 3.76033 3.90089 4.06176 4.24968 4.40756 4.45584 4.47516 4.68860 4.75738 4.84298 4.93815 5.05823 5.08259 5.08837 5.15173 5.21624 5.28551 5.34368 5.44857 5.65836 5.73774 5.78690 5.94740 6.18684 6.23205 6.42016 6.69252 6.82476 6.94189 7.01058 7.25797 7.39425 7.52697 7.55349 7.76661 8.01835 8.44194 8.62669 8.88581 9.33604 10.81888 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020007 B = 0.002847 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.166346 B = 9831.949061 C =10360.562517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.149 4.149 3 C 0.058 3.942 4 H 0.107 0.893 5 N -0.581 5.581 6 C 0.373 3.627 7 C -0.244 4.244 8 N 0.052 4.948 9 O -0.136 6.136 10 O -0.141 6.141 11 C 0.145 3.855 12 C -0.085 4.085 13 N -0.268 5.268 14 N -0.357 5.357 15 C 0.092 3.908 16 C 0.504 3.496 17 O -0.527 6.527 18 N -0.704 5.704 19 C 0.266 3.734 20 H 0.049 0.951 21 C -0.148 4.148 22 C -0.537 4.537 23 H 0.062 0.938 24 C 0.067 3.933 25 N -0.881 5.881 26 Si 0.902 3.098 27 H -0.273 1.273 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.384 0.616 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.388 0.612 43 H 0.091 0.909 44 H 0.015 0.985 45 H 0.027 0.973 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.046 2.393 3.435 20.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.188 4.188 3 C -0.053 4.053 4 H 0.125 0.875 5 N -0.210 5.210 6 C 0.140 3.860 7 C -0.342 4.342 8 N 0.582 4.418 9 O -0.359 6.359 10 O -0.362 6.362 11 C -0.024 4.024 12 C -0.144 4.144 13 N -0.090 5.090 14 N -0.141 5.141 15 C -0.048 4.048 16 C 0.286 3.714 17 O -0.403 6.403 18 N -0.353 5.353 19 C 0.165 3.835 20 H 0.067 0.933 21 C -0.207 4.207 22 C -0.575 4.575 23 H 0.080 0.920 24 C -0.136 4.136 25 N -0.518 5.518 26 Si 0.729 3.271 27 H -0.197 1.197 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.210 0.790 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.220 0.780 43 H 0.110 0.890 44 H 0.034 0.966 45 H 0.046 0.954 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.913 4.690 2.328 19.624 hybrid contribution -0.049 -1.673 -0.390 1.719 sum -18.962 3.016 1.938 19.298 Atomic orbital electron populations 1.22064 0.94297 1.03626 1.02406 1.22228 0.97147 0.94335 1.05108 1.22136 0.97061 0.95825 0.90231 0.87488 1.56455 1.21817 1.33928 1.08801 1.18404 0.87318 0.90986 0.89276 1.20151 0.98276 1.12105 1.03667 1.42510 0.97696 1.00364 1.01183 1.94578 1.50571 1.81569 1.09217 1.94525 1.46663 1.03775 1.91231 1.21887 0.96222 0.91756 0.92569 1.20406 0.88357 1.03964 1.01631 1.77647 0.90030 1.22768 1.18569 1.48194 1.11088 1.29565 1.25235 1.22296 0.92843 1.01990 0.87685 1.19880 0.87827 0.80042 0.83620 1.90717 1.63790 1.45345 1.40487 1.46548 1.10912 1.57520 1.20312 1.18790 0.72660 0.96050 0.95974 0.93268 1.22087 1.04657 0.97858 0.96051 1.21212 0.92402 1.52971 0.90930 0.92019 1.24887 0.96199 0.94521 0.98027 1.69902 1.00350 1.48866 1.32706 0.86391 0.78580 0.77826 0.84289 1.19740 1.20825 1.20784 0.92834 0.90968 0.91797 0.88929 0.90154 0.78963 0.89054 0.89095 0.90179 0.89594 0.87598 0.87841 0.77952 0.89020 0.96619 0.95379 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 9.33 37.16 0.35 -1.35 16 2 C -0.15 -1.64 5.28 -26.73 -0.14 -1.78 16 3 C 0.06 0.74 2.14 -68.86 -0.15 0.60 16 4 H 0.11 1.18 4.99 -51.93 -0.26 0.92 16 5 N -0.58 -7.87 5.75 -54.82 -0.32 -8.19 16 6 C 0.37 4.72 5.25 -153.40 -0.80 3.92 16 7 C -0.24 -3.09 5.31 -80.11 -0.43 -3.51 16 8 N 0.05 0.69 4.10 33.88 0.14 0.83 16 9 O -0.14 -1.95 19.25 -29.46 -0.57 -2.52 16 10 O -0.14 -1.87 17.42 -29.46 -0.51 -2.38 16 11 C 0.15 1.63 7.21 -82.44 -0.59 1.04 16 12 C -0.09 -0.66 10.44 36.00 0.38 -0.28 16 13 N -0.27 -3.16 12.56 33.65 0.42 -2.74 16 14 N -0.36 -4.13 3.96 -67.24 -0.27 -4.40 16 15 C 0.09 0.83 9.69 59.85 0.58 1.41 16 16 C 0.50 8.88 7.19 -10.98 -0.08 8.80 16 17 O -0.53 -11.65 16.09 5.56 0.09 -11.56 16 18 N -0.70 -12.97 4.93 -54.93 -0.27 -13.24 16 19 C 0.27 6.31 2.56 -69.08 -0.18 6.13 16 20 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 21 C -0.15 -3.49 9.26 37.16 0.34 -3.15 16 22 C -0.54 -13.34 8.73 -34.44 -0.30 -13.65 16 23 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 24 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16 25 N -0.88 -23.89 11.32 55.43 0.63 -23.26 16 26 Si 0.90 19.73 29.54 -169.99 -5.02 14.71 16 27 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.72 3.02 -51.93 -0.16 0.57 16 33 H 0.09 0.94 7.41 -51.93 -0.38 0.56 16 34 H 0.08 0.93 8.01 -51.93 -0.42 0.51 16 35 H 0.38 5.25 7.91 -39.29 -0.31 4.94 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.63 7.23 -51.93 -0.38 0.26 16 40 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.10 1.07 7.96 -51.93 -0.41 0.66 16 42 H 0.39 6.03 7.89 -40.82 -0.32 5.71 16 43 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 44 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 383.18 15.07 5.77 5.77 Total: -1.00 -30.89 383.18 -7.29 -38.18 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -6.27 Total: 8.97 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -1.12 Total: -0.19 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.34 Total: -50.99 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.99 Total: -16.46 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.89 -7.29 -38.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345004122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.699 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds