Wall clock time and date at job start Tue Mar 31 2020 22:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46398 * 2 1 4 4 H 1.08997 * 109.47247 * 305.56037 * 3 2 1 5 5 N 1.46901 * 109.47215 * 65.56712 * 3 2 1 6 6 C 1.39207 * 110.99582 * 267.68872 * 5 3 2 7 7 C 1.36175 * 126.22320 * 125.13999 * 6 5 3 8 8 N 1.48033 * 126.09157 * 359.96862 * 7 6 5 9 9 O 1.21798 * 119.99593 * 90.00573 * 8 7 6 10 10 O 1.21792 * 120.00483 * 269.72986 * 8 7 6 11 11 C 1.39775 * 107.81534 * 180.23792 * 7 6 5 12 12 C 1.50693 * 125.84016 * 179.73016 * 11 7 6 13 13 N 1.30845 * 108.32105 * 359.55200 * 11 7 6 14 14 N 1.35258 * 126.22100 * 305.10597 * 6 5 3 15 15 C 1.46504 * 126.03854 * 0.04733 * 14 6 5 16 16 C 1.50702 * 109.46555 * 185.55886 * 3 2 1 17 17 O 1.21278 * 120.00374 * 239.99688 * 16 3 2 18 18 N 1.34778 * 119.99878 * 60.00815 * 16 3 2 19 19 C 1.46499 * 119.99918 * 179.97438 * 18 16 3 20 20 H 1.09002 * 109.47013 * 324.99263 * 19 18 16 21 21 C 1.52997 * 109.47338 * 84.99522 * 19 18 16 22 22 C 1.50710 * 109.47046 * 204.99883 * 19 18 16 23 23 H 1.07997 * 119.99734 * 359.97438 * 22 19 18 24 24 C 1.37872 * 120.00019 * 179.97438 * 22 19 18 25 25 N 1.31511 * 120.00030 * 359.97438 * 24 22 19 26 26 Si 1.86803 * 119.99914 * 179.97438 * 24 22 19 27 27 H 1.48498 * 109.46876 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46873 * 120.00108 * 26 24 22 29 29 H 1.48497 * 109.47307 * 239.99955 * 26 24 22 30 30 H 1.09000 * 109.46982 * 61.20098 * 1 2 3 31 31 H 1.09000 * 109.46630 * 181.19736 * 1 2 3 32 32 H 1.08994 * 109.47141 * 301.19379 * 1 2 3 33 33 H 1.08997 * 109.47161 * 240.00742 * 2 1 3 34 34 H 1.08997 * 109.47110 * 119.99692 * 2 1 3 35 35 H 1.00898 * 111.00115 * 31.63780 * 5 3 2 36 36 H 1.09003 * 109.47020 * 90.00361 * 12 11 7 37 37 H 1.08998 * 109.47301 * 210.00167 * 12 11 7 38 38 H 1.08995 * 109.47122 * 330.00366 * 12 11 7 39 39 H 1.08997 * 109.47034 * 86.78000 * 15 14 6 40 40 H 1.08997 * 109.46883 * 206.77982 * 15 14 6 41 41 H 1.08995 * 109.47135 * 326.77782 * 15 14 6 42 42 H 0.97004 * 119.99994 * 359.97438 * 18 16 3 43 43 H 1.09003 * 109.47041 * 179.97438 * 21 19 18 44 44 H 1.08994 * 109.47119 * 299.99599 * 21 19 18 45 45 H 1.09005 * 109.46868 * 60.00214 * 21 19 18 46 46 H 0.97001 * 120.00353 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5975 1.9843 -0.8360 5 7 1.6629 2.0952 1.2610 6 6 0.4435 2.7549 1.1361 7 6 -0.6524 2.5765 1.9244 8 7 -0.7607 1.6442 3.0692 9 8 -0.4616 2.0179 4.1892 10 8 -1.1535 0.5051 2.8919 11 6 -1.6589 3.4259 1.4563 12 6 -3.0460 3.5513 2.0315 13 7 -1.1893 4.0964 0.4355 14 7 0.1320 3.6902 0.2100 15 6 1.0196 4.1896 -0.8431 16 6 3.5406 1.4449 -0.1376 17 8 4.2284 1.9413 0.7292 18 7 4.1185 0.8954 -1.2242 19 6 5.5773 0.8981 -1.3583 20 1 5.9799 1.8157 -0.9293 21 6 6.1597 -0.3085 -0.6195 22 6 5.9479 0.8207 -2.8171 23 1 5.1740 0.7738 -3.5689 24 6 7.2747 0.8099 -3.1917 25 7 8.2169 0.8675 -2.2761 26 14 7.7339 0.7134 -4.9998 27 1 6.4985 0.6594 -5.8220 28 1 8.5252 1.9130 -5.3742 29 1 8.5431 -0.5083 -5.2405 30 1 -0.3633 0.4951 -0.9006 31 1 -0.3632 -1.0275 0.0215 32 1 -0.3633 0.5322 0.8790 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6381 1.4299 2.0191 36 1 -3.0510 4.3209 2.8035 37 1 -3.7440 3.8256 1.2405 38 1 -3.3464 2.5982 2.4667 39 1 0.9471 3.5419 -1.7168 40 1 0.7249 5.2028 -1.1164 41 1 2.0471 4.1956 -0.4796 42 1 3.5684 0.4981 -1.9174 43 1 7.2451 -0.3067 -0.7196 44 1 5.8917 -0.2526 0.4355 45 1 5.7571 -1.2262 -1.0485 46 1 9.1504 0.8595 -2.5395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345004122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:02 Heat of formation + Delta-G solvation = 23.905447 kcal Electronic energy + Delta-G solvation = -30966.771122 eV Core-core repulsion = 26703.190705 eV Total energy + Delta-G solvation = -4263.580417 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.77741 -42.57811 -41.00956 -38.39135 -37.61987 -36.69030 -35.39687 -34.54928 -33.73902 -31.54340 -30.99711 -30.77273 -28.44434 -27.40689 -27.20942 -25.81910 -23.63021 -22.93590 -22.62414 -21.53966 -21.10139 -20.17400 -19.91336 -19.17945 -18.60587 -17.98806 -17.63021 -17.20795 -17.05864 -16.83618 -16.32150 -15.82868 -15.79320 -15.21617 -14.95421 -14.76351 -14.60156 -14.41901 -14.05502 -13.82831 -13.74269 -13.52842 -13.37725 -13.17935 -13.01261 -12.97882 -12.85909 -12.76117 -12.68783 -12.48321 -12.30479 -12.28370 -12.14686 -12.11569 -12.03677 -11.94889 -11.10837 -10.74098 -10.59675 -10.47635 -9.82362 -9.79495 -8.18866 -6.36316 -0.65202 0.02599 0.11962 0.81290 0.97682 1.43979 1.45832 1.56716 1.61652 1.87153 2.37674 2.61645 2.97695 3.12110 3.15139 3.45824 3.47683 3.52354 3.72455 3.99412 4.02539 4.09438 4.22024 4.36934 4.46421 4.48578 4.52414 4.54697 4.65336 4.74362 4.88888 4.90392 4.92287 4.95372 5.08133 5.12018 5.21350 5.27714 5.40655 5.48118 5.56970 5.66242 5.86706 6.05256 6.07941 6.45264 6.71385 6.86547 7.29837 7.46347 8.87441 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020007 B = 0.002847 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.166346 B = 9831.949061 C =10360.562517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.145 4.145 3 C 0.076 3.924 4 H 0.131 0.869 5 N -0.594 5.594 6 C 0.365 3.635 7 C -0.253 4.253 8 N 0.057 4.943 9 O -0.171 6.171 10 O -0.124 6.124 11 C 0.144 3.856 12 C -0.085 4.085 13 N -0.273 5.273 14 N -0.356 5.356 15 C 0.083 3.917 16 C 0.506 3.494 17 O -0.576 6.576 18 N -0.696 5.696 19 C 0.274 3.726 20 H 0.000 1.000 21 C -0.136 4.136 22 C -0.543 4.543 23 H 0.078 0.922 24 C 0.015 3.985 25 N -0.918 5.918 26 Si 0.970 3.030 27 H -0.257 1.257 28 H -0.286 1.286 29 H -0.282 1.282 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.380 0.620 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.125 0.875 41 H 0.087 0.913 42 H 0.406 0.594 43 H 0.065 0.935 44 H 0.011 0.989 45 H 0.042 0.958 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.510 2.006 1.362 22.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.184 4.184 3 C -0.035 4.035 4 H 0.148 0.852 5 N -0.224 5.224 6 C 0.133 3.867 7 C -0.350 4.350 8 N 0.586 4.414 9 O -0.387 6.387 10 O -0.352 6.352 11 C -0.026 4.026 12 C -0.144 4.144 13 N -0.095 5.095 14 N -0.139 5.139 15 C -0.055 4.055 16 C 0.290 3.710 17 O -0.456 6.456 18 N -0.346 5.346 19 C 0.171 3.829 20 H 0.018 0.982 21 C -0.195 4.195 22 C -0.582 4.582 23 H 0.096 0.904 24 C -0.185 4.185 25 N -0.556 5.556 26 Si 0.795 3.205 27 H -0.180 1.180 28 H -0.212 1.212 29 H -0.208 1.208 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.125 0.875 34 H 0.091 0.909 35 H 0.207 0.793 36 H 0.120 0.880 37 H 0.128 0.872 38 H 0.101 0.899 39 H 0.126 0.874 40 H 0.143 0.857 41 H 0.105 0.895 42 H 0.242 0.758 43 H 0.084 0.916 44 H 0.030 0.970 45 H 0.062 0.938 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.407 4.351 0.280 21.846 hybrid contribution 0.690 -1.548 0.268 1.716 sum -20.717 2.802 0.548 20.912 Atomic orbital electron populations 1.22008 0.93083 1.04346 1.02291 1.22237 0.98015 0.92678 1.05471 1.21980 0.92894 0.97657 0.90927 0.85168 1.56357 1.22792 1.34265 1.08940 1.18370 0.86925 0.91411 0.90029 1.20304 0.98937 1.12508 1.03274 1.42603 0.97200 1.00375 1.01241 1.94589 1.52310 1.81842 1.09948 1.94498 1.45522 1.03985 1.91211 1.22422 0.97211 0.90825 0.92093 1.20569 0.86782 1.04549 1.02456 1.77649 0.90067 1.22923 1.18903 1.48434 1.11300 1.28946 1.25237 1.22521 0.91685 1.03738 0.87598 1.20630 0.89876 0.78250 0.82200 1.90700 1.65608 1.47167 1.42078 1.46204 1.09099 1.57955 1.21376 1.18333 0.75483 0.93679 0.95390 0.98218 1.21917 1.03014 0.98594 0.95942 1.21563 0.92876 1.52137 0.91583 0.90439 1.25775 0.96323 0.94236 1.02201 1.70057 1.00631 1.50051 1.34863 0.85329 0.78590 0.77331 0.79279 1.18021 1.21232 1.20768 0.91829 0.89785 0.93014 0.87542 0.90876 0.79345 0.87956 0.87158 0.89918 0.87417 0.85662 0.89451 0.75824 0.91646 0.97013 0.93849 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.33 71.98 0.67 -2.14 16 2 C -0.15 -2.88 5.28 30.60 0.16 -2.72 16 3 C 0.08 1.84 2.14 44.17 0.09 1.93 16 4 H 0.13 2.55 4.99 -2.39 -0.01 2.54 16 5 N -0.59 -15.86 5.75 -327.37 -1.88 -17.74 16 6 C 0.37 8.85 5.25 131.42 0.69 9.54 16 7 C -0.25 -6.08 5.31 36.26 0.19 -5.89 16 8 N 0.06 1.47 4.10 -46.71 -0.19 1.27 16 9 O -0.17 -4.97 19.25 18.89 0.36 -4.61 16 10 O -0.12 -3.13 17.42 18.90 0.33 -2.80 16 11 C 0.14 2.97 7.21 43.08 0.31 3.28 16 12 C -0.09 -1.13 10.44 71.23 0.74 -0.38 16 13 N -0.27 -5.86 12.56 -47.45 -0.60 -6.46 16 14 N -0.36 -7.59 3.96 -366.64 -1.45 -9.04 16 15 C 0.08 1.35 9.69 127.77 1.24 2.59 16 16 C 0.51 17.74 7.19 87.66 0.63 18.38 16 17 O -0.58 -26.30 16.09 -3.02 -0.05 -26.35 16 18 N -0.70 -25.19 4.93 -446.09 -2.20 -27.39 16 19 C 0.27 13.19 2.56 44.25 0.11 13.30 16 20 H 0.00 0.00 7.58 -2.39 -0.02 -0.02 16 21 C -0.14 -6.53 9.26 71.98 0.67 -5.86 16 22 C -0.54 -26.70 8.73 25.60 0.22 -26.48 16 23 H 0.08 3.48 7.74 -2.91 -0.02 3.46 16 24 C 0.01 0.76 5.30 84.65 0.45 1.21 16 25 N -0.92 -50.82 11.32 21.44 0.24 -50.58 16 26 Si 0.97 39.91 29.54 68.60 2.03 41.93 16 27 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 28 H -0.29 -11.88 7.11 99.48 0.71 -11.17 16 29 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.05 3.02 -2.39 -0.01 1.05 16 33 H 0.11 1.84 7.41 -2.39 -0.02 1.82 16 34 H 0.07 1.59 8.01 -2.39 -0.02 1.57 16 35 H 0.38 10.44 7.91 -89.70 -0.71 9.73 16 36 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.11 1.27 7.23 -2.39 -0.02 1.25 16 40 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.09 1.74 7.96 -2.39 -0.02 1.72 16 42 H 0.41 11.76 7.89 -92.71 -0.73 11.02 16 43 H 0.06 3.50 6.07 -2.39 -0.01 3.49 16 44 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 46 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -68.37 383.18 2.39 -65.98 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: -0.39 Total: 29.02 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 6.18 Total: 6.76 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -6.08 Total: -109.93 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: 0.64 Total: -33.76 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.93 kcal Total: -68.37 2.39 -65.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345004122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.890 kcal (2) G-P(sol) polarization free energy of solvation -68.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds