Wall clock time and date at job start Tue Mar 31 2020 22:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47327 * 2 1 4 4 H 1.09001 * 109.46854 * 54.32927 * 3 2 1 5 5 N 1.46904 * 109.47282 * 294.33114 * 3 2 1 6 6 C 1.39206 * 110.99891 * 110.15364 * 5 3 2 7 7 C 1.36167 * 126.21789 * 58.87959 * 6 5 3 8 8 N 1.48030 * 126.09699 * 359.97438 * 7 6 5 9 9 O 1.21802 * 120.00420 * 87.85341 * 8 7 6 10 10 O 1.21799 * 120.00172 * 267.85243 * 8 7 6 11 11 C 1.39784 * 107.81216 * 179.84323 * 7 6 5 12 12 C 1.50703 * 125.83981 * 180.16440 * 11 7 6 13 13 N 1.30843 * 108.32103 * 0.41892 * 11 7 6 14 14 N 1.35247 * 126.22271 * 239.18380 * 6 5 3 15 15 C 1.46504 * 126.03821 * 0.02562 * 14 6 5 16 16 C 1.50695 * 109.47207 * 174.32794 * 3 2 1 17 17 O 1.21287 * 119.99862 * 120.00479 * 16 3 2 18 18 N 1.34774 * 120.00637 * 299.72458 * 16 3 2 19 19 C 1.46491 * 120.00685 * 179.97438 * 18 16 3 20 20 H 1.08998 * 109.47535 * 325.00267 * 19 18 16 21 21 C 1.52998 * 109.47137 * 85.00189 * 19 18 16 22 22 C 1.50702 * 109.47482 * 205.00369 * 19 18 16 23 23 H 1.07995 * 119.99964 * 359.97438 * 22 19 18 24 24 C 1.37875 * 120.00212 * 180.02562 * 22 19 18 25 25 N 1.31518 * 119.99917 * 359.97438 * 24 22 19 26 26 Si 1.86796 * 120.00167 * 179.97438 * 24 22 19 27 27 H 1.48505 * 109.47184 * 89.99435 * 26 24 22 28 28 H 1.48494 * 109.47346 * 209.99798 * 26 24 22 29 29 H 1.48504 * 109.46941 * 329.99789 * 26 24 22 30 30 H 1.09001 * 109.46551 * 304.49156 * 1 2 3 31 31 H 1.09001 * 109.47225 * 64.48981 * 1 2 3 32 32 H 1.09001 * 109.46801 * 184.49100 * 1 2 3 33 33 H 1.09000 * 109.47008 * 240.00455 * 2 1 3 34 34 H 1.09004 * 109.47656 * 120.00471 * 2 1 3 35 35 H 1.00897 * 110.99632 * 234.11291 * 5 3 2 36 36 H 1.08999 * 109.46714 * 270.32385 * 12 11 7 37 37 H 1.09001 * 109.47141 * 30.32182 * 12 11 7 38 38 H 1.08992 * 109.46688 * 150.32480 * 12 11 7 39 39 H 1.08999 * 109.46872 * 95.90828 * 15 14 6 40 40 H 1.09002 * 109.46911 * 215.90155 * 15 14 6 41 41 H 1.08994 * 109.47338 * 335.90211 * 15 14 6 42 42 H 0.97009 * 119.99520 * 0.02562 * 18 16 3 43 43 H 1.09004 * 109.47161 * 59.99972 * 21 19 18 44 44 H 1.09003 * 109.47544 * 180.02562 * 21 19 18 45 45 H 1.09004 * 109.47159 * 300.00525 * 21 19 18 46 46 H 0.96999 * 119.99831 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5962 1.9848 0.8349 5 7 1.6653 2.0944 -1.2620 6 6 0.6887 3.0639 -1.0519 7 6 0.7967 4.1520 -0.2404 8 7 1.9752 4.5161 0.5780 9 8 2.8642 5.1957 0.0970 10 8 2.0559 4.1362 1.7324 11 6 -0.4027 4.8656 -0.3202 12 6 -0.7199 6.1429 0.4139 13 7 -1.2047 4.2319 -1.1370 14 7 -0.5419 3.0932 -1.6121 15 6 -1.0858 2.1077 -2.5499 16 6 3.5404 1.4448 0.1404 17 8 4.2298 1.9407 -0.7255 18 7 4.1162 0.9008 1.2309 19 6 5.5747 0.9025 1.3671 20 1 6.0315 0.7746 0.3858 21 6 6.0289 2.2326 1.9716 22 6 5.9965 -0.2290 2.2687 23 1 5.2524 -0.8837 2.6977 24 6 7.3322 -0.4278 2.5468 25 7 8.2383 0.3698 2.0248 26 14 7.8548 -1.8299 3.6649 27 1 8.0984 -3.0478 2.8508 28 1 9.1012 -1.4548 4.3797 29 1 6.7802 -2.1019 4.6531 30 1 -0.3632 0.5820 0.8470 31 1 -0.3634 0.4426 -0.9275 32 1 -0.3633 -1.0245 0.0805 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.4737 2.4886 -1.7193 36 1 -1.1677 5.9057 1.3789 37 1 0.1977 6.7105 0.5688 38 1 -1.4192 6.7363 -0.1751 39 1 -1.6809 1.3761 -2.0034 40 1 -1.7145 2.6125 -3.2833 41 1 -0.2666 1.6015 -3.0605 42 1 3.5646 0.5074 1.9252 43 1 5.5722 2.3606 2.9530 44 1 7.1143 2.2342 2.0725 45 1 5.7239 3.0511 1.3194 46 1 9.1780 0.2296 2.2201 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345004123.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:06 Heat of formation + Delta-G solvation = 42.069000 kcal Electronic energy + Delta-G solvation = -31483.631359 eV Core-core repulsion = 27220.838574 eV Total energy + Delta-G solvation = -4262.792786 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.65667 -41.35004 -39.64382 -36.70614 -36.31067 -34.89235 -34.56244 -33.33332 -32.27881 -30.21029 -30.05727 -29.18093 -27.31800 -26.15492 -25.22640 -24.81782 -22.29924 -21.48612 -20.81825 -20.72933 -19.55388 -19.03784 -18.59735 -18.03750 -17.11931 -16.94137 -16.39939 -15.82403 -15.64898 -15.20784 -14.95849 -14.56782 -14.23450 -14.12786 -13.95973 -13.79976 -13.31556 -13.20578 -12.87714 -12.76726 -12.56064 -12.41992 -11.99012 -11.90433 -11.71076 -11.52421 -11.38636 -11.11747 -11.05865 -10.98813 -10.97981 -10.91858 -10.72241 -10.31496 -10.20712 -9.99790 -9.64654 -9.41889 -9.19737 -9.04578 -8.56269 -8.01876 -6.11844 -4.21674 0.62050 0.88254 1.15075 1.65716 1.93737 3.05478 3.24972 3.29418 3.32095 3.33975 3.78317 3.89323 4.10352 4.34887 4.59860 4.65812 4.70937 4.79073 4.81798 4.95015 5.07274 5.10071 5.11129 5.19039 5.20829 5.31327 5.38767 5.57760 5.59801 5.72925 5.84310 6.01166 6.09456 6.33244 6.45914 6.61656 6.87353 6.92182 7.03013 7.17447 7.37918 7.51752 7.67234 7.71645 7.91001 8.15439 8.52382 8.70139 8.94815 9.45129 10.94014 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017149 B = 0.003397 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.317404 B = 8241.223792 C = 9138.966939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.106 4.106 3 C 0.061 3.939 4 H 0.093 0.907 5 N -0.620 5.620 6 C 0.353 3.647 7 C -0.223 4.223 8 N 0.049 4.951 9 O -0.126 6.126 10 O -0.138 6.138 11 C 0.135 3.865 12 C -0.086 4.086 13 N -0.266 5.266 14 N -0.336 5.336 15 C 0.098 3.902 16 C 0.493 3.507 17 O -0.548 6.548 18 N -0.690 5.690 19 C 0.265 3.735 20 H 0.049 0.951 21 C -0.146 4.146 22 C -0.535 4.535 23 H 0.061 0.939 24 C 0.067 3.933 25 N -0.881 5.881 26 Si 0.902 3.098 27 H -0.280 1.280 28 H -0.285 1.285 29 H -0.273 1.273 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.393 0.607 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.391 0.609 43 H 0.029 0.971 44 H 0.090 0.910 45 H 0.017 0.983 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.315 4.254 -6.074 22.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.144 4.144 3 C -0.051 4.051 4 H 0.111 0.889 5 N -0.265 5.265 6 C 0.123 3.877 7 C -0.320 4.320 8 N 0.580 4.420 9 O -0.351 6.351 10 O -0.359 6.359 11 C -0.032 4.032 12 C -0.145 4.145 13 N -0.089 5.089 14 N -0.116 5.116 15 C -0.042 4.042 16 C 0.276 3.724 17 O -0.427 6.427 18 N -0.336 5.336 19 C 0.164 3.836 20 H 0.067 0.933 21 C -0.205 4.205 22 C -0.574 4.574 23 H 0.079 0.921 24 C -0.136 4.136 25 N -0.519 5.519 26 Si 0.729 3.271 27 H -0.206 1.206 28 H -0.210 1.210 29 H -0.198 1.198 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.229 0.771 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.224 0.776 43 H 0.048 0.952 44 H 0.109 0.891 45 H 0.036 0.964 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.786 3.810 -7.972 24.439 hybrid contribution 1.601 -0.280 1.774 2.406 sum -21.185 3.531 -6.198 22.353 Atomic orbital electron populations 1.21829 0.95431 1.01878 1.01615 1.21515 0.96224 0.92796 1.03886 1.22007 0.95275 0.98119 0.89680 0.88879 1.57285 1.15216 1.29152 1.24836 1.18387 0.88100 0.89659 0.91527 1.21049 0.92392 1.05266 1.13275 1.42493 1.00244 0.98774 1.00478 1.94602 1.30928 1.34164 1.75408 1.94570 1.84063 1.55940 1.01341 1.21971 0.88356 0.97281 0.95626 1.20428 1.03819 0.90406 0.99810 1.77636 1.18368 0.96681 1.16208 1.48465 1.08496 1.19868 1.34784 1.22194 1.01326 0.89451 0.91236 1.20276 0.88819 0.79811 0.83537 1.90663 1.63499 1.47088 1.41493 1.46457 1.11127 1.56399 1.19638 1.18837 0.72670 0.94274 0.97814 0.93307 1.22058 1.04325 0.96215 0.97901 1.21178 0.92646 1.13300 1.30233 0.92052 1.24876 0.96326 0.96476 0.95926 1.69909 1.01317 1.37090 1.43548 0.86442 0.78203 0.81915 0.80499 1.20613 1.21031 1.19806 0.93197 0.92598 0.92047 0.90136 0.90066 0.77097 0.88974 0.90053 0.89094 0.89484 0.88622 0.87538 0.77599 0.95179 0.89117 0.96386 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.53 37.16 0.35 -1.08 16 2 C -0.11 -1.27 5.56 -26.73 -0.15 -1.42 16 3 C 0.06 0.90 2.21 -68.86 -0.15 0.75 16 4 H 0.09 1.43 5.63 -51.93 -0.29 1.14 16 5 N -0.62 -8.44 5.90 -54.83 -0.32 -8.77 16 6 C 0.35 4.60 6.02 -153.41 -0.92 3.68 16 7 C -0.22 -3.21 6.05 -80.11 -0.48 -3.69 16 8 N 0.05 0.82 4.03 33.88 0.14 0.96 16 9 O -0.13 -2.36 19.26 -29.46 -0.57 -2.93 16 10 O -0.14 -2.47 18.01 -29.46 -0.53 -3.00 16 11 C 0.14 1.64 7.21 -82.43 -0.59 1.05 16 12 C -0.09 -0.76 10.44 36.01 0.38 -0.39 16 13 N -0.27 -3.09 12.56 33.66 0.42 -2.66 16 14 N -0.34 -3.59 4.02 -67.24 -0.27 -3.86 16 15 C 0.10 0.63 10.08 59.85 0.60 1.24 16 16 C 0.49 9.65 7.18 -10.99 -0.08 9.57 16 17 O -0.55 -12.64 14.98 5.55 0.08 -12.56 16 18 N -0.69 -14.29 4.93 -54.94 -0.27 -14.56 16 19 C 0.27 6.75 2.56 -69.09 -0.18 6.57 16 20 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 21 C -0.15 -3.75 9.26 37.16 0.34 -3.41 16 22 C -0.54 -14.07 8.73 -34.44 -0.30 -14.37 16 23 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 24 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 25 N -0.88 -24.84 11.32 55.43 0.63 -24.21 16 26 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.49 4.91 -51.93 -0.25 0.23 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 0.96 7.43 -51.93 -0.39 0.58 16 35 H 0.39 6.24 6.87 -39.29 -0.27 5.97 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.45 7.06 -51.93 -0.37 0.08 16 40 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.11 0.63 7.97 -51.93 -0.41 0.21 16 42 H 0.39 7.10 7.91 -40.82 -0.32 6.78 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 386.75 15.07 5.83 5.83 Total: -1.00 -32.27 386.75 -7.52 -39.79 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -6.36 Total: 10.24 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -1.28 Total: 0.21 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.32 Total: -53.10 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -1.01 Total: -18.49 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.27 -7.52 -39.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345004123.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.860 kcal (2) G-P(sol) polarization free energy of solvation -32.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds