Wall clock time and date at job start Tue Mar 31 2020 22:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47327 * 2 1 4 4 H 1.09001 * 109.46854 * 54.32927 * 3 2 1 5 5 N 1.46904 * 109.47282 * 294.33114 * 3 2 1 6 6 C 1.39206 * 110.99891 * 110.15364 * 5 3 2 7 7 C 1.36167 * 126.21789 * 58.87959 * 6 5 3 8 8 N 1.48030 * 126.09699 * 359.97438 * 7 6 5 9 9 O 1.21802 * 120.00420 * 87.85341 * 8 7 6 10 10 O 1.21799 * 120.00172 * 267.85243 * 8 7 6 11 11 C 1.39784 * 107.81216 * 179.84323 * 7 6 5 12 12 C 1.50703 * 125.83981 * 180.16440 * 11 7 6 13 13 N 1.30843 * 108.32103 * 0.41892 * 11 7 6 14 14 N 1.35247 * 126.22271 * 239.18380 * 6 5 3 15 15 C 1.46504 * 126.03821 * 0.02562 * 14 6 5 16 16 C 1.50695 * 109.47207 * 174.32794 * 3 2 1 17 17 O 1.21287 * 119.99862 * 120.00479 * 16 3 2 18 18 N 1.34774 * 120.00637 * 299.72458 * 16 3 2 19 19 C 1.46491 * 120.00685 * 179.97438 * 18 16 3 20 20 H 1.08998 * 109.47535 * 325.00267 * 19 18 16 21 21 C 1.52998 * 109.47137 * 85.00189 * 19 18 16 22 22 C 1.50702 * 109.47482 * 205.00369 * 19 18 16 23 23 H 1.07995 * 119.99964 * 359.97438 * 22 19 18 24 24 C 1.37875 * 120.00212 * 180.02562 * 22 19 18 25 25 N 1.31518 * 119.99917 * 359.97438 * 24 22 19 26 26 Si 1.86796 * 120.00167 * 179.97438 * 24 22 19 27 27 H 1.48505 * 109.47184 * 89.99435 * 26 24 22 28 28 H 1.48494 * 109.47346 * 209.99798 * 26 24 22 29 29 H 1.48504 * 109.46941 * 329.99789 * 26 24 22 30 30 H 1.09001 * 109.46551 * 304.49156 * 1 2 3 31 31 H 1.09001 * 109.47225 * 64.48981 * 1 2 3 32 32 H 1.09001 * 109.46801 * 184.49100 * 1 2 3 33 33 H 1.09000 * 109.47008 * 240.00455 * 2 1 3 34 34 H 1.09004 * 109.47656 * 120.00471 * 2 1 3 35 35 H 1.00897 * 110.99632 * 234.11291 * 5 3 2 36 36 H 1.08999 * 109.46714 * 270.32385 * 12 11 7 37 37 H 1.09001 * 109.47141 * 30.32182 * 12 11 7 38 38 H 1.08992 * 109.46688 * 150.32480 * 12 11 7 39 39 H 1.08999 * 109.46872 * 95.90828 * 15 14 6 40 40 H 1.09002 * 109.46911 * 215.90155 * 15 14 6 41 41 H 1.08994 * 109.47338 * 335.90211 * 15 14 6 42 42 H 0.97009 * 119.99520 * 0.02562 * 18 16 3 43 43 H 1.09004 * 109.47161 * 59.99972 * 21 19 18 44 44 H 1.09003 * 109.47544 * 180.02562 * 21 19 18 45 45 H 1.09004 * 109.47159 * 300.00525 * 21 19 18 46 46 H 0.96999 * 119.99831 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5962 1.9848 0.8349 5 7 1.6653 2.0944 -1.2620 6 6 0.6887 3.0639 -1.0519 7 6 0.7967 4.1520 -0.2404 8 7 1.9752 4.5161 0.5780 9 8 2.8642 5.1957 0.0970 10 8 2.0559 4.1362 1.7324 11 6 -0.4027 4.8656 -0.3202 12 6 -0.7199 6.1429 0.4139 13 7 -1.2047 4.2319 -1.1370 14 7 -0.5419 3.0932 -1.6121 15 6 -1.0858 2.1077 -2.5499 16 6 3.5404 1.4448 0.1404 17 8 4.2298 1.9407 -0.7255 18 7 4.1162 0.9008 1.2309 19 6 5.5747 0.9025 1.3671 20 1 6.0315 0.7746 0.3858 21 6 6.0289 2.2326 1.9716 22 6 5.9965 -0.2290 2.2687 23 1 5.2524 -0.8837 2.6977 24 6 7.3322 -0.4278 2.5468 25 7 8.2383 0.3698 2.0248 26 14 7.8548 -1.8299 3.6649 27 1 8.0984 -3.0478 2.8508 28 1 9.1012 -1.4548 4.3797 29 1 6.7802 -2.1019 4.6531 30 1 -0.3632 0.5820 0.8470 31 1 -0.3634 0.4426 -0.9275 32 1 -0.3633 -1.0245 0.0805 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.4737 2.4886 -1.7193 36 1 -1.1677 5.9057 1.3789 37 1 0.1977 6.7105 0.5688 38 1 -1.4192 6.7363 -0.1751 39 1 -1.6809 1.3761 -2.0034 40 1 -1.7145 2.6125 -3.2833 41 1 -0.2666 1.6015 -3.0605 42 1 3.5646 0.5074 1.9252 43 1 5.5722 2.3606 2.9530 44 1 7.1143 2.2342 2.0725 45 1 5.7239 3.0511 1.3194 46 1 9.1780 0.2296 2.2201 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345004123.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:05 Heat of formation + Delta-G solvation = 20.290409 kcal Electronic energy + Delta-G solvation = -31484.575750 eV Core-core repulsion = 27220.838574 eV Total energy + Delta-G solvation = -4263.737176 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.75968 -42.53802 -41.17714 -38.02219 -37.67928 -36.73267 -35.42873 -34.66555 -33.88778 -31.23086 -31.06145 -30.79111 -28.45782 -27.39132 -27.17298 -25.82417 -23.63169 -22.77997 -22.17768 -21.75041 -21.22349 -20.17694 -19.92306 -19.50379 -18.39657 -18.08549 -17.84954 -17.25173 -17.06097 -16.49766 -16.34950 -16.07868 -15.53036 -15.11051 -14.89545 -14.69233 -14.62399 -14.39694 -14.07788 -13.94896 -13.61605 -13.47825 -13.31496 -13.08971 -12.99638 -12.89037 -12.87927 -12.85639 -12.74818 -12.43057 -12.34739 -12.26781 -12.19293 -12.13058 -11.93608 -11.18674 -11.13177 -10.72173 -10.59520 -10.55008 -10.46452 -9.88360 -8.16951 -6.34979 -0.79303 -0.13514 0.07018 0.68904 0.93668 1.46172 1.46722 1.49866 1.58142 2.12401 2.35800 2.48906 2.92464 3.13618 3.14515 3.52195 3.60262 3.70538 3.81890 4.07373 4.16308 4.27432 4.30950 4.39396 4.46551 4.55761 4.63094 4.71427 4.75695 4.76138 4.88398 4.92272 5.02484 5.08035 5.12434 5.15764 5.21656 5.27938 5.39486 5.49956 5.56475 5.64394 5.83442 5.96916 6.06780 6.27547 6.69782 6.74970 7.22427 7.39902 8.89557 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017149 B = 0.003397 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.317404 B = 8241.223792 C = 9138.966939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C 0.077 3.923 4 H 0.092 0.908 5 N -0.607 5.607 6 C 0.345 3.655 7 C -0.246 4.246 8 N 0.056 4.944 9 O -0.171 6.171 10 O -0.142 6.142 11 C 0.134 3.866 12 C -0.087 4.087 13 N -0.261 5.261 14 N -0.319 5.319 15 C 0.084 3.916 16 C 0.490 3.510 17 O -0.587 6.587 18 N -0.688 5.688 19 C 0.274 3.726 20 H 0.002 0.998 21 C -0.132 4.132 22 C -0.547 4.547 23 H 0.076 0.924 24 C 0.015 3.985 25 N -0.917 5.917 26 Si 0.974 3.026 27 H -0.276 1.276 28 H -0.285 1.285 29 H -0.259 1.259 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.381 0.619 36 H 0.107 0.893 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.406 0.594 43 H 0.038 0.962 44 H 0.068 0.932 45 H 0.006 0.994 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.467 2.678 -5.695 25.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.142 4.142 3 C -0.035 4.035 4 H 0.110 0.890 5 N -0.250 5.250 6 C 0.113 3.887 7 C -0.343 4.343 8 N 0.584 4.416 9 O -0.389 6.389 10 O -0.367 6.367 11 C -0.034 4.034 12 C -0.145 4.145 13 N -0.085 5.085 14 N -0.098 5.098 15 C -0.054 4.054 16 C 0.274 3.726 17 O -0.469 6.469 18 N -0.336 5.336 19 C 0.171 3.829 20 H 0.020 0.980 21 C -0.190 4.190 22 C -0.585 4.585 23 H 0.094 0.906 24 C -0.185 4.185 25 N -0.555 5.555 26 Si 0.798 3.202 27 H -0.202 1.202 28 H -0.211 1.211 29 H -0.183 1.183 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.215 0.785 36 H 0.125 0.875 37 H 0.091 0.909 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.241 0.759 43 H 0.058 0.942 44 H 0.087 0.913 45 H 0.025 0.975 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -25.984 2.253 -7.633 27.176 hybrid contribution 2.493 0.221 1.577 2.958 sum -23.491 2.474 -6.056 24.385 Atomic orbital electron populations 1.21793 0.92929 1.03321 1.02005 1.21572 0.98311 0.90281 1.04023 1.21931 0.90987 1.00315 0.90247 0.89015 1.57363 1.14741 1.29112 1.23744 1.18382 0.88878 0.89382 0.92036 1.21274 0.91857 1.06837 1.14308 1.42820 1.00620 0.97823 1.00370 1.94600 1.32712 1.35955 1.75596 1.94532 1.84333 1.55530 1.02355 1.22423 0.87247 0.98043 0.95643 1.20578 1.04081 0.89231 1.00642 1.77655 1.18082 0.96846 1.15932 1.48833 1.07250 1.19804 1.33961 1.22678 1.02147 0.89320 0.91290 1.21091 0.91012 0.78189 0.82268 1.90644 1.65220 1.48309 1.42688 1.46174 1.09504 1.57120 1.20772 1.18390 0.75160 0.94082 0.95239 0.97962 1.21880 1.02890 0.96214 0.98059 1.21504 0.93269 1.13557 1.30137 0.90562 1.25808 0.96379 0.98982 0.97329 1.70062 1.01638 1.38921 1.44907 0.85321 0.77888 0.78418 0.78572 1.20197 1.21109 1.18264 0.93451 0.91666 0.89968 0.90253 0.89757 0.78515 0.87460 0.90903 0.86804 0.87313 0.86388 0.86822 0.75873 0.94239 0.91285 0.97516 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.53 71.98 0.69 -1.58 16 2 C -0.10 -2.29 5.56 30.59 0.17 -2.12 16 3 C 0.08 2.24 2.21 44.17 0.10 2.34 16 4 H 0.09 2.75 5.63 -2.39 -0.01 2.73 16 5 N -0.61 -16.18 5.90 -327.39 -1.93 -18.11 16 6 C 0.34 8.58 6.02 131.43 0.79 9.37 16 7 C -0.25 -6.95 6.05 36.26 0.22 -6.73 16 8 N 0.06 1.95 4.03 -46.71 -0.19 1.76 16 9 O -0.17 -6.79 19.26 18.88 0.36 -6.42 16 10 O -0.14 -5.19 18.01 18.89 0.34 -4.85 16 11 C 0.13 3.03 7.21 43.08 0.31 3.35 16 12 C -0.09 -1.40 10.44 71.24 0.74 -0.66 16 13 N -0.26 -5.42 12.56 -47.43 -0.60 -6.01 16 14 N -0.32 -6.01 4.02 -366.65 -1.47 -7.49 16 15 C 0.08 0.79 10.08 127.77 1.29 2.07 16 16 C 0.49 19.61 7.18 87.66 0.63 20.24 16 17 O -0.59 -28.37 14.98 -3.05 -0.05 -28.41 16 18 N -0.69 -28.98 4.93 -446.12 -2.20 -31.18 16 19 C 0.27 14.42 2.56 44.25 0.11 14.53 16 20 H 0.00 0.15 7.58 -2.39 -0.02 0.13 16 21 C -0.13 -7.02 9.26 71.98 0.67 -6.35 16 22 C -0.55 -28.85 8.73 25.60 0.22 -28.62 16 23 H 0.08 3.71 7.74 -2.91 -0.02 3.69 16 24 C 0.02 0.82 5.30 84.65 0.45 1.27 16 25 N -0.92 -52.97 11.32 21.45 0.24 -52.72 16 26 Si 0.97 41.84 29.54 68.60 2.03 43.87 16 27 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 28 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 29 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.90 4.91 -2.39 -0.01 0.88 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.08 1.83 7.43 -2.39 -0.02 1.81 16 35 H 0.38 12.37 6.87 -89.70 -0.62 11.75 16 36 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.11 0.64 7.06 -2.39 -0.02 0.62 16 40 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.11 0.98 7.97 -2.39 -0.02 0.96 16 42 H 0.41 14.56 7.91 -92.70 -0.73 13.82 16 43 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.07 3.98 6.07 -2.39 -0.01 3.96 16 45 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 46 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -72.78 386.75 2.62 -70.16 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: -0.31 Total: 32.30 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 6.39 Total: 7.11 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -6.14 Total: -113.75 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: 0.66 Total: -39.69 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -72.78 2.62 -70.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345004123.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.453 kcal (2) G-P(sol) polarization free energy of solvation -72.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds