Wall clock time and date at job start Tue Mar 31 2020 22:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47307 * 2 1 4 4 H 1.08997 * 109.46963 * 53.98346 * 3 2 1 5 5 N 1.46900 * 109.47383 * 293.98228 * 3 2 1 6 6 C 1.39208 * 110.99685 * 97.42904 * 5 3 2 7 7 C 1.36168 * 126.22437 * 61.80227 * 6 5 3 8 8 N 1.48036 * 126.08939 * 359.97438 * 7 6 5 9 9 O 1.21809 * 119.99966 * 83.59364 * 8 7 6 10 10 O 1.21796 * 120.00421 * 263.59199 * 8 7 6 11 11 C 1.39765 * 107.81620 * 179.84371 * 7 6 5 12 12 C 1.50702 * 125.84225 * 180.16627 * 11 7 6 13 13 N 1.30846 * 108.32229 * 0.42043 * 11 7 6 14 14 N 1.35248 * 126.21789 * 242.10761 * 6 5 3 15 15 C 1.46504 * 126.04625 * 0.02601 * 14 6 5 16 16 C 1.50698 * 109.47201 * 173.97958 * 3 2 1 17 17 O 1.21290 * 120.00144 * 120.00113 * 16 3 2 18 18 N 1.34776 * 120.00136 * 300.00396 * 16 3 2 19 19 C 1.46505 * 119.99703 * 180.02562 * 18 16 3 20 20 C 1.53001 * 109.47016 * 180.02562 * 19 18 16 21 21 C 1.50698 * 109.47449 * 179.97438 * 20 19 18 22 22 H 1.08002 * 119.99794 * 359.97438 * 21 20 19 23 23 C 1.37880 * 120.00294 * 180.02562 * 21 20 19 24 24 N 1.31515 * 119.99868 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99867 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47388 * 89.99954 * 25 23 21 27 27 H 1.48500 * 109.46855 * 209.99562 * 25 23 21 28 28 H 1.48498 * 109.47642 * 329.99709 * 25 23 21 29 29 H 1.08999 * 109.47045 * 174.59407 * 1 2 3 30 30 H 1.08995 * 109.46733 * 54.59244 * 1 2 3 31 31 H 1.08994 * 109.46671 * 294.59545 * 1 2 3 32 32 H 1.09003 * 109.47713 * 120.00174 * 2 1 3 33 33 H 1.09001 * 109.47247 * 240.00090 * 2 1 3 34 34 H 1.00903 * 111.00013 * 333.47701 * 5 3 2 35 35 H 1.09007 * 109.46645 * 270.32937 * 12 11 7 36 36 H 1.08997 * 109.46740 * 30.32476 * 12 11 7 37 37 H 1.08993 * 109.47337 * 150.32781 * 12 11 7 38 38 H 1.09004 * 109.47042 * 95.46247 * 15 14 6 39 39 H 1.09000 * 109.47443 * 215.46766 * 15 14 6 40 40 H 1.09000 * 109.46418 * 335.46703 * 15 14 6 41 41 H 0.96992 * 120.00084 * 0.02562 * 18 16 3 42 42 H 1.09005 * 109.47165 * 299.99509 * 19 18 16 43 43 H 1.09000 * 109.47475 * 60.00172 * 19 18 16 44 44 H 1.09000 * 109.47359 * 300.00063 * 20 19 18 45 45 H 1.09007 * 109.47196 * 59.99542 * 20 19 18 46 46 H 0.96995 * 120.00177 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5914 1.9865 0.8312 5 7 1.6726 2.0919 -1.2654 6 6 0.5119 2.8467 -1.1201 7 6 0.3462 3.9170 -0.2948 8 7 1.3696 4.4870 0.6103 9 8 2.1885 5.2800 0.1811 10 8 1.3929 4.1630 1.7842 11 6 -0.9613 4.3836 -0.4569 12 6 -1.5746 5.5579 0.2614 13 7 -1.5635 3.6230 -1.3349 14 7 -0.6579 2.6466 -1.7687 15 6 -0.9299 1.5943 -2.7510 16 6 3.5396 1.4451 0.1490 17 8 4.2340 1.9392 -0.7140 18 7 4.1093 0.8983 1.2413 19 6 5.5671 0.9013 1.3863 20 6 5.9499 0.2243 2.7039 21 6 7.4495 0.2269 2.8529 22 1 8.0678 0.6670 2.0844 23 6 8.0324 -0.3336 3.9697 24 7 7.2796 -0.8699 4.9052 25 14 9.8912 -0.3310 4.1539 26 1 10.3173 0.9054 4.8576 27 1 10.3123 -1.5181 4.9404 28 1 10.5220 -0.3782 2.8104 29 1 -0.3633 -1.0231 -0.0968 30 1 -0.3632 0.5954 -0.8376 31 1 -0.3632 0.4277 0.9344 32 1 1.8934 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.5719 1.4125 -2.0046 35 1 -2.0336 5.2167 1.1894 36 1 -0.7999 6.2906 0.4872 37 1 -2.3338 6.0155 -0.3727 38 1 -1.3992 0.7454 -2.2536 39 1 -1.5988 1.9797 -3.5206 40 1 0.0058 1.2749 -3.2097 41 1 3.5541 0.5028 1.9312 42 1 6.0161 0.3576 0.5550 43 1 5.9301 1.9291 1.3866 44 1 5.5009 0.7675 3.5354 45 1 5.5870 -0.8035 2.7032 46 1 7.6895 -1.2645 5.6907 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345158188.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:45 Heat of formation + Delta-G solvation = 42.629510 kcal Electronic energy + Delta-G solvation = -30587.020396 eV Core-core repulsion = 26324.251915 eV Total energy + Delta-G solvation = -4262.768480 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.81486 -41.46563 -39.83891 -37.35749 -36.34286 -34.91862 -34.75000 -33.37023 -32.72285 -30.46942 -30.26425 -29.79532 -27.76072 -26.62381 -24.98368 -24.50634 -22.65815 -21.39741 -21.32630 -20.95844 -20.11254 -19.00655 -18.63549 -17.85865 -17.23548 -17.12488 -16.65565 -16.28675 -15.93577 -15.36501 -14.91743 -14.79271 -14.65076 -14.48343 -14.12978 -13.99019 -13.65566 -13.47773 -13.35696 -13.10030 -12.92786 -12.68314 -12.47069 -12.28483 -11.98915 -11.76084 -11.56064 -11.47318 -11.19933 -11.13883 -11.02045 -10.98243 -10.95554 -10.63465 -10.33093 -9.83490 -9.73384 -9.46491 -9.22131 -8.98710 -8.57281 -8.36491 -6.08068 -4.10749 0.58244 0.81164 1.07401 1.61231 1.88780 2.74544 2.79342 3.31456 3.37388 3.41036 3.55394 3.65010 4.02384 4.17819 4.28133 4.34680 4.39843 4.42034 4.47563 4.52982 4.68189 4.76748 4.94476 5.03774 5.05026 5.06074 5.17424 5.25679 5.29202 5.40595 5.49038 5.62531 5.67581 5.92178 6.30033 6.31402 6.34734 6.47816 6.72542 6.78091 6.84265 7.51440 7.62163 7.70185 7.88645 7.91815 8.27803 8.53519 8.94970 9.54076 11.03562 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017855 B = 0.002654 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.841716 B =10548.999597 C =11249.494441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.148 4.148 3 C 0.060 3.940 4 H 0.114 0.886 5 N -0.575 5.575 6 C 0.355 3.645 7 C -0.204 4.204 8 N 0.055 4.945 9 O -0.121 6.121 10 O -0.149 6.149 11 C 0.144 3.856 12 C -0.086 4.086 13 N -0.269 5.269 14 N -0.380 5.380 15 C 0.089 3.911 16 C 0.511 3.489 17 O -0.521 6.521 18 N -0.716 5.716 19 C 0.123 3.877 20 C 0.013 3.987 21 C -0.521 4.521 22 H 0.059 0.941 23 C 0.059 3.941 24 N -0.894 5.894 25 Si 0.897 3.103 26 H -0.279 1.279 27 H -0.286 1.286 28 H -0.273 1.273 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.372 0.628 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.397 0.603 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.024 0.976 45 H 0.022 0.978 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.727 3.587 -13.376 27.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.187 4.187 3 C -0.051 4.051 4 H 0.132 0.868 5 N -0.205 5.205 6 C 0.126 3.874 7 C -0.300 4.300 8 N 0.587 4.413 9 O -0.349 6.349 10 O -0.367 6.367 11 C -0.025 4.025 12 C -0.144 4.144 13 N -0.091 5.091 14 N -0.166 5.166 15 C -0.051 4.051 16 C 0.293 3.707 17 O -0.397 6.397 18 N -0.367 5.367 19 C 0.002 3.998 20 C -0.024 4.024 21 C -0.560 4.560 22 H 0.078 0.922 23 C -0.142 4.142 24 N -0.533 5.533 25 Si 0.724 3.276 26 H -0.205 1.205 27 H -0.212 1.212 28 H -0.198 1.198 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.198 0.802 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.123 0.877 40 H 0.111 0.889 41 H 0.231 0.769 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.040 0.960 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.366 3.648 -14.960 28.824 hybrid contribution 1.228 -0.698 0.956 1.706 sum -23.138 2.950 -14.004 27.207 Atomic orbital electron populations 1.22095 0.94861 1.02942 1.02548 1.22208 0.96783 0.94267 1.05428 1.22117 0.96672 0.96049 0.90226 0.86782 1.57151 1.24474 1.29752 1.09135 1.18714 0.83449 0.93840 0.91352 1.19874 0.93084 1.06135 1.10953 1.42404 0.99535 0.98966 1.00442 1.94593 1.32178 1.27712 1.80406 1.94553 1.78047 1.63906 1.00243 1.21964 0.88655 0.97032 0.94842 1.20430 1.01732 0.92233 1.00039 1.77587 1.12764 1.02342 1.16388 1.48733 1.06214 1.26210 1.35453 1.22164 1.04224 0.87980 0.90730 1.19876 0.88265 0.79460 0.83111 1.90726 1.63419 1.44398 1.41111 1.46266 1.10104 1.58994 1.21290 1.21777 0.75818 1.01286 1.00960 1.19325 0.97212 0.95730 0.90162 1.21039 0.91224 1.38365 1.05353 0.92233 1.24988 0.98477 0.95090 0.95692 1.69951 1.35229 1.38666 1.09445 0.86512 0.85220 0.77590 0.78240 1.20476 1.21212 1.19759 0.90942 0.93287 0.91673 0.88437 0.90027 0.80214 0.88844 0.90027 0.89080 0.89005 0.87738 0.88853 0.76922 0.92483 0.92233 0.95727 0.96019 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 9.56 37.16 0.36 -0.77 16 2 C -0.15 -1.26 5.24 -26.73 -0.14 -1.40 16 3 C 0.06 0.74 2.45 -68.86 -0.17 0.57 16 4 H 0.11 1.51 5.63 -51.93 -0.29 1.22 16 5 N -0.58 -6.67 5.74 -54.83 -0.31 -6.98 16 6 C 0.36 4.00 5.41 -153.41 -0.83 3.17 16 7 C -0.20 -2.67 6.09 -80.11 -0.49 -3.16 16 8 N 0.05 0.86 4.02 33.88 0.14 1.00 16 9 O -0.12 -2.14 19.26 -29.46 -0.57 -2.71 16 10 O -0.15 -2.42 18.10 -29.46 -0.53 -2.96 16 11 C 0.14 1.57 7.21 -82.44 -0.59 0.97 16 12 C -0.09 -0.67 10.44 36.01 0.38 -0.29 16 13 N -0.27 -2.75 12.56 33.65 0.42 -2.33 16 14 N -0.38 -3.31 3.50 -67.24 -0.24 -3.55 16 15 C 0.09 0.36 10.03 59.85 0.60 0.96 16 16 C 0.51 8.62 7.22 -10.99 -0.08 8.54 16 17 O -0.52 -10.86 16.43 5.55 0.09 -10.77 16 18 N -0.72 -12.39 5.41 -60.29 -0.33 -12.71 16 19 C 0.12 2.63 5.61 -4.04 -0.02 2.61 16 20 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 21 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 22 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 23 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 24 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 25 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.30 2.73 -51.93 -0.14 0.15 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.10 0.83 7.40 -51.93 -0.38 0.45 16 33 H 0.08 0.62 8.00 -51.93 -0.42 0.20 16 34 H 0.37 3.16 6.64 -39.29 -0.26 2.90 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.23 6.80 -51.93 -0.35 -0.12 16 39 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.09 0.21 6.87 -51.93 -0.36 -0.14 16 41 H 0.40 5.92 7.82 -40.82 -0.32 5.60 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 387.44 15.07 5.84 5.84 Total: -1.00 -35.98 387.44 -7.61 -43.59 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.29 Total: 2.32 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -1.54 Total: -1.84 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.42 Total: -49.93 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -1.01 Total: -16.43 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.98 -7.61 -43.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345158188.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.217 kcal (2) G-P(sol) polarization free energy of solvation -35.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds