Wall clock time and date at job start Tue Mar 31 2020 22:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47307 * 2 1 4 4 H 1.08997 * 109.46963 * 53.98346 * 3 2 1 5 5 N 1.46900 * 109.47383 * 293.98228 * 3 2 1 6 6 C 1.39208 * 110.99685 * 97.42904 * 5 3 2 7 7 C 1.36168 * 126.22437 * 61.80227 * 6 5 3 8 8 N 1.48036 * 126.08939 * 359.97438 * 7 6 5 9 9 O 1.21809 * 119.99966 * 83.59364 * 8 7 6 10 10 O 1.21796 * 120.00421 * 263.59199 * 8 7 6 11 11 C 1.39765 * 107.81620 * 179.84371 * 7 6 5 12 12 C 1.50702 * 125.84225 * 180.16627 * 11 7 6 13 13 N 1.30846 * 108.32229 * 0.42043 * 11 7 6 14 14 N 1.35248 * 126.21789 * 242.10761 * 6 5 3 15 15 C 1.46504 * 126.04625 * 0.02601 * 14 6 5 16 16 C 1.50698 * 109.47201 * 173.97958 * 3 2 1 17 17 O 1.21290 * 120.00144 * 120.00113 * 16 3 2 18 18 N 1.34776 * 120.00136 * 300.00396 * 16 3 2 19 19 C 1.46505 * 119.99703 * 180.02562 * 18 16 3 20 20 C 1.53001 * 109.47016 * 180.02562 * 19 18 16 21 21 C 1.50698 * 109.47449 * 179.97438 * 20 19 18 22 22 H 1.08002 * 119.99794 * 359.97438 * 21 20 19 23 23 C 1.37880 * 120.00294 * 180.02562 * 21 20 19 24 24 N 1.31515 * 119.99868 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99867 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47388 * 89.99954 * 25 23 21 27 27 H 1.48500 * 109.46855 * 209.99562 * 25 23 21 28 28 H 1.48498 * 109.47642 * 329.99709 * 25 23 21 29 29 H 1.08999 * 109.47045 * 174.59407 * 1 2 3 30 30 H 1.08995 * 109.46733 * 54.59244 * 1 2 3 31 31 H 1.08994 * 109.46671 * 294.59545 * 1 2 3 32 32 H 1.09003 * 109.47713 * 120.00174 * 2 1 3 33 33 H 1.09001 * 109.47247 * 240.00090 * 2 1 3 34 34 H 1.00903 * 111.00013 * 333.47701 * 5 3 2 35 35 H 1.09007 * 109.46645 * 270.32937 * 12 11 7 36 36 H 1.08997 * 109.46740 * 30.32476 * 12 11 7 37 37 H 1.08993 * 109.47337 * 150.32781 * 12 11 7 38 38 H 1.09004 * 109.47042 * 95.46247 * 15 14 6 39 39 H 1.09000 * 109.47443 * 215.46766 * 15 14 6 40 40 H 1.09000 * 109.46418 * 335.46703 * 15 14 6 41 41 H 0.96992 * 120.00084 * 0.02562 * 18 16 3 42 42 H 1.09005 * 109.47165 * 299.99509 * 19 18 16 43 43 H 1.09000 * 109.47475 * 60.00172 * 19 18 16 44 44 H 1.09000 * 109.47359 * 300.00063 * 20 19 18 45 45 H 1.09007 * 109.47196 * 59.99542 * 20 19 18 46 46 H 0.96995 * 120.00177 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5914 1.9865 0.8312 5 7 1.6726 2.0919 -1.2654 6 6 0.5119 2.8467 -1.1201 7 6 0.3462 3.9170 -0.2948 8 7 1.3696 4.4870 0.6103 9 8 2.1885 5.2800 0.1811 10 8 1.3929 4.1630 1.7842 11 6 -0.9613 4.3836 -0.4569 12 6 -1.5746 5.5579 0.2614 13 7 -1.5635 3.6230 -1.3349 14 7 -0.6579 2.6466 -1.7687 15 6 -0.9299 1.5943 -2.7510 16 6 3.5396 1.4451 0.1490 17 8 4.2340 1.9392 -0.7140 18 7 4.1093 0.8983 1.2413 19 6 5.5671 0.9013 1.3863 20 6 5.9499 0.2243 2.7039 21 6 7.4495 0.2269 2.8529 22 1 8.0678 0.6670 2.0844 23 6 8.0324 -0.3336 3.9697 24 7 7.2796 -0.8699 4.9052 25 14 9.8912 -0.3310 4.1539 26 1 10.3173 0.9054 4.8576 27 1 10.3123 -1.5181 4.9404 28 1 10.5220 -0.3782 2.8104 29 1 -0.3633 -1.0231 -0.0968 30 1 -0.3632 0.5954 -0.8376 31 1 -0.3632 0.4277 0.9344 32 1 1.8934 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.5719 1.4125 -2.0046 35 1 -2.0336 5.2167 1.1894 36 1 -0.7999 6.2906 0.4872 37 1 -2.3338 6.0155 -0.3727 38 1 -1.3992 0.7454 -2.2536 39 1 -1.5988 1.9797 -3.5206 40 1 0.0058 1.2749 -3.2097 41 1 3.5541 0.5028 1.9312 42 1 6.0161 0.3576 0.5550 43 1 5.9301 1.9291 1.3866 44 1 5.5009 0.7675 3.5354 45 1 5.5870 -0.8035 2.7032 46 1 7.6895 -1.2645 5.6907 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345158188.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:44 Heat of formation + Delta-G solvation = 17.255853 kcal Electronic energy + Delta-G solvation = -30588.120680 eV Core-core repulsion = 26324.251915 eV Total energy + Delta-G solvation = -4263.868765 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.73809 -42.55102 -41.11731 -38.42954 -37.59025 -36.62126 -35.45642 -34.89564 -33.96248 -31.68157 -31.25882 -30.85343 -28.82738 -27.59069 -26.33040 -25.79887 -23.52495 -22.95192 -22.27412 -22.17805 -21.39898 -19.92916 -19.84465 -18.88031 -18.49394 -18.27334 -18.15165 -17.47693 -16.95905 -16.57073 -16.45144 -16.18004 -15.75505 -15.44051 -15.05125 -14.93674 -14.65052 -14.53979 -14.29390 -14.02329 -13.76629 -13.64023 -13.42063 -13.32344 -13.23257 -12.93870 -12.85179 -12.76843 -12.53528 -12.49160 -12.29249 -12.24329 -12.18843 -12.11177 -11.93933 -11.67058 -11.44734 -10.81471 -10.59921 -10.47120 -10.09201 -9.88730 -8.23406 -6.33600 -0.69077 -0.03634 0.17168 0.76251 1.02611 1.42152 1.43313 1.44858 1.54096 1.79847 2.35790 2.47099 2.94074 3.11472 3.24955 3.28260 3.39580 3.57269 3.65719 3.95387 3.96452 4.13660 4.17406 4.31101 4.34802 4.44900 4.47207 4.49654 4.54349 4.58026 4.61291 4.82990 4.83788 4.86360 4.94218 5.09778 5.17278 5.22044 5.23500 5.46738 5.58117 5.66731 5.78461 5.99670 6.16248 6.38859 6.49102 6.79053 7.13608 7.35527 8.88439 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017855 B = 0.002654 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.841716 B =10548.999597 C =11249.494441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.143 4.143 3 C 0.075 3.925 4 H 0.105 0.895 5 N -0.588 5.588 6 C 0.357 3.643 7 C -0.233 4.233 8 N 0.062 4.938 9 O -0.173 6.173 10 O -0.148 6.148 11 C 0.140 3.860 12 C -0.087 4.087 13 N -0.269 5.269 14 N -0.363 5.363 15 C 0.071 3.929 16 C 0.508 3.492 17 O -0.563 6.563 18 N -0.711 5.711 19 C 0.143 3.857 20 C 0.024 3.976 21 C -0.547 4.547 22 H 0.057 0.943 23 C 0.009 3.991 24 N -0.925 5.925 25 Si 0.963 3.037 26 H -0.274 1.274 27 H -0.278 1.278 28 H -0.266 1.266 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.388 0.612 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.410 0.590 42 H 0.052 0.948 43 H 0.040 0.960 44 H 0.006 0.994 45 H 0.014 0.986 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.401 2.260 -14.554 29.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.181 4.181 3 C -0.036 4.036 4 H 0.123 0.877 5 N -0.221 5.221 6 C 0.126 3.874 7 C -0.330 4.330 8 N 0.590 4.410 9 O -0.391 6.391 10 O -0.372 6.372 11 C -0.029 4.029 12 C -0.145 4.145 13 N -0.091 5.091 14 N -0.149 5.149 15 C -0.066 4.066 16 C 0.293 3.707 17 O -0.441 6.441 18 N -0.363 5.363 19 C 0.020 3.980 20 C -0.013 4.013 21 C -0.586 4.586 22 H 0.076 0.924 23 C -0.190 4.190 24 N -0.565 5.565 25 Si 0.788 3.212 26 H -0.199 1.199 27 H -0.203 1.203 28 H -0.191 1.191 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.217 0.783 35 H 0.125 0.875 36 H 0.091 0.909 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.139 0.861 40 H 0.131 0.869 41 H 0.246 0.754 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.025 0.975 45 H 0.032 0.968 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -26.056 2.345 -16.208 30.775 hybrid contribution 1.652 -0.343 1.292 2.125 sum -24.404 2.002 -14.916 28.672 Atomic orbital electron populations 1.22062 0.92949 1.04419 1.02319 1.22242 0.98292 0.91306 1.06294 1.21917 0.92577 0.98623 0.90467 0.87702 1.56953 1.25164 1.30576 1.09365 1.18548 0.84091 0.93302 0.91450 1.20147 0.93129 1.07675 1.12041 1.42750 0.99534 0.98220 1.00544 1.94586 1.34236 1.29707 1.80578 1.94513 1.77980 1.63343 1.01381 1.22363 0.87746 0.97797 0.95007 1.20558 1.01869 0.91231 1.00856 1.77581 1.12910 1.02544 1.16075 1.49096 1.04730 1.26081 1.34949 1.22723 1.06006 0.87418 0.90482 1.20675 0.90355 0.77810 0.81827 1.90702 1.65029 1.45949 1.42437 1.46065 1.08600 1.59392 1.22210 1.21249 0.78343 0.99497 0.98958 1.19121 0.95900 0.95179 0.91102 1.21450 0.92852 1.38591 1.05660 0.92437 1.25843 1.03342 0.94557 0.95290 1.70049 1.37223 1.39233 1.09950 0.85468 0.79404 0.77863 0.78462 1.19948 1.20350 1.19062 0.88693 0.92581 0.92720 0.88381 0.88419 0.78315 0.87474 0.90944 0.87023 0.86735 0.86116 0.86891 0.75414 0.92918 0.94125 0.97516 0.96789 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.56 71.98 0.69 -0.95 16 2 C -0.14 -2.11 5.24 30.59 0.16 -1.95 16 3 C 0.08 1.78 2.45 44.17 0.11 1.89 16 4 H 0.11 2.75 5.63 -2.39 -0.01 2.73 16 5 N -0.59 -12.93 5.74 -327.39 -1.88 -14.81 16 6 C 0.36 7.55 5.41 131.43 0.71 8.26 16 7 C -0.23 -6.03 6.09 36.26 0.22 -5.81 16 8 N 0.06 2.01 4.02 -46.72 -0.19 1.82 16 9 O -0.17 -6.48 19.26 18.87 0.36 -6.12 16 10 O -0.15 -4.95 18.10 18.89 0.34 -4.61 16 11 C 0.14 2.88 7.21 43.08 0.31 3.19 16 12 C -0.09 -1.26 10.44 71.24 0.74 -0.52 16 13 N -0.27 -4.91 12.56 -47.44 -0.60 -5.51 16 14 N -0.36 -5.39 3.50 -366.64 -1.28 -6.68 16 15 C 0.07 0.30 10.03 127.77 1.28 1.58 16 16 C 0.51 17.28 7.22 87.66 0.63 17.91 16 17 O -0.56 -23.90 16.43 -3.06 -0.05 -23.95 16 18 N -0.71 -24.94 5.41 -463.04 -2.50 -27.45 16 19 C 0.14 6.26 5.61 86.38 0.48 6.74 16 20 C 0.02 1.24 5.09 29.85 0.15 1.39 16 21 C -0.55 -30.84 9.11 25.60 0.23 -30.60 16 22 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 23 C 0.01 0.49 5.46 84.66 0.46 0.95 16 24 N -0.93 -54.31 13.29 21.45 0.28 -54.02 16 25 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 26 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 27 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 28 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 29 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.48 2.73 -2.39 -0.01 0.47 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.10 1.48 7.40 -2.39 -0.02 1.46 16 33 H 0.10 1.17 8.00 -2.39 -0.02 1.15 16 34 H 0.39 5.70 6.64 -89.69 -0.60 5.11 16 35 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.11 0.05 6.80 -2.39 -0.02 0.04 16 39 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.11 0.07 6.87 -2.39 -0.02 0.06 16 41 H 0.41 12.27 7.82 -92.71 -0.73 11.54 16 42 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 43 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.01 0.72 8.14 -2.38 -0.02 0.70 16 46 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -79.97 387.44 2.43 -77.55 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -0.28 Total: 15.69 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 6.19 Total: 2.08 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -6.17 Total: -106.64 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: 0.66 Total: -34.67 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -79.97 2.43 -77.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345158188.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.802 kcal (2) G-P(sol) polarization free energy of solvation -79.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds