Wall clock time and date at job start Tue Mar 31 2020 22:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.46957 * 2 1 4 4 N 1.30832 * 125.86389 * 270.19533 * 3 2 1 5 5 N 1.40061 * 108.34200 * 180.23979 * 4 3 2 6 6 C 1.46506 * 126.03507 * 179.76228 * 5 4 3 7 7 C 1.35132 * 107.93114 * 359.74136 * 5 4 3 8 8 O 1.35760 * 126.19422 * 180.02562 * 7 5 4 9 9 C 1.42890 * 117.00515 * 274.91205 * 8 7 5 10 10 C 1.35950 * 107.61284 * 0.02562 * 7 5 4 11 11 C 1.50694 * 126.08409 * 179.97438 * 10 7 5 12 12 N 1.46498 * 109.47168 * 90.02103 * 11 10 7 13 13 C 1.34778 * 119.99876 * 180.02562 * 12 11 10 14 14 O 1.21592 * 120.00156 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00330 * 180.02562 * 13 12 11 16 16 C 1.46492 * 120.00505 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47413 * 179.97438 * 16 15 13 18 18 O 1.21293 * 120.00025 * 359.97438 * 17 16 15 19 19 N 1.34780 * 119.99869 * 180.02562 * 17 16 15 20 20 C 1.37093 * 119.99570 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00545 * 359.97438 * 20 19 17 22 22 C 1.38954 * 120.00196 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99426 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00401 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47128 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47169 * 119.99854 * 24 22 20 27 27 H 1.48500 * 109.47113 * 239.99934 * 24 22 20 28 28 H 1.09004 * 109.47031 * 299.99291 * 1 2 3 29 29 H 1.08996 * 109.47350 * 60.00183 * 1 2 3 30 30 H 1.09000 * 109.46929 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47060 * 239.99961 * 2 1 3 32 32 H 1.08999 * 109.47176 * 120.00560 * 2 1 3 33 33 H 1.08994 * 109.47269 * 274.14461 * 6 5 4 34 34 H 1.09002 * 109.47177 * 34.14441 * 6 5 4 35 35 H 1.08998 * 109.47332 * 154.14567 * 6 5 4 36 36 H 1.09001 * 109.46982 * 64.69374 * 9 8 7 37 37 H 1.08999 * 109.47476 * 184.69249 * 9 8 7 38 38 H 1.09003 * 109.47120 * 304.69601 * 9 8 7 39 39 H 1.09003 * 109.47059 * 330.01861 * 11 10 7 40 40 H 1.08998 * 109.46978 * 210.02764 * 11 10 7 41 41 H 0.96997 * 120.00442 * 0.02562 * 12 11 10 42 42 H 0.97007 * 119.99497 * 359.97438 * 15 13 12 43 43 H 1.08999 * 109.47195 * 299.99748 * 16 15 13 44 44 H 1.09005 * 109.47438 * 59.99777 * 16 15 13 45 45 H 0.96989 * 120.00222 * 359.97438 * 19 17 16 46 46 H 0.97004 * 120.00084 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2844 2.1447 -1.0603 5 7 2.7361 3.4016 -0.6386 6 6 3.1325 4.5115 -1.5089 7 6 2.7414 3.4100 0.7127 8 8 3.1141 4.4463 1.5065 9 6 4.5077 4.5737 1.7955 10 6 2.3059 2.1928 1.1333 11 6 2.1509 1.7520 2.5660 12 7 0.8003 2.0749 3.0328 13 6 0.4324 1.7708 4.2933 14 8 1.2215 1.2290 5.0430 15 7 -0.8102 2.0673 4.7227 16 6 -1.2104 1.7363 6.0925 17 6 -2.6360 2.1697 6.3181 18 8 -3.2566 2.7031 5.4228 19 7 -3.2210 1.9656 7.5150 20 6 -4.5181 2.3594 7.7199 21 1 -5.0710 2.8336 6.9225 22 6 -5.1215 2.1485 8.9537 23 7 -4.4487 1.5719 9.9241 24 14 -6.8886 2.6857 9.2333 25 1 -7.4193 3.3065 7.9931 26 1 -7.7149 1.5041 9.5887 27 1 -6.9362 3.6741 10.3405 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.1806 4.3991 -1.7865 34 1 2.5161 4.5064 -2.4079 35 1 2.9959 5.4547 -0.9800 36 1 5.0516 4.7865 0.8751 37 1 4.6589 5.3885 2.5035 38 1 4.8756 3.6434 2.2281 39 1 2.8831 2.2689 3.1864 40 1 2.3116 0.6761 2.6345 41 1 0.1709 2.5075 2.4349 42 1 -1.4397 2.5000 4.1246 43 1 -1.1291 0.6601 6.2448 44 1 -0.5582 2.2532 6.7965 45 1 -2.7247 1.5394 8.2310 46 1 -4.8700 1.4243 10.7853 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345732078.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:27 Heat of formation + Delta-G solvation = -26.561675 kcal Electronic energy + Delta-G solvation = -29093.053915 eV Core-core repulsion = 24827.285080 eV Total energy + Delta-G solvation = -4265.768835 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.94771 -39.64760 -38.51078 -38.13645 -35.55535 -34.38481 -34.13143 -33.55018 -32.10433 -31.33326 -30.45129 -28.45853 -27.31106 -26.94557 -25.16310 -24.17871 -23.54009 -21.11234 -20.59348 -20.04419 -19.51259 -18.42535 -18.02244 -17.67371 -16.80239 -16.41493 -16.01804 -15.56706 -15.36732 -15.11017 -15.05107 -14.59105 -14.50724 -14.24825 -14.09768 -14.06857 -13.84000 -13.53971 -13.35724 -13.22181 -12.95019 -12.58647 -12.40380 -12.15120 -12.11013 -11.81782 -11.66162 -11.59618 -11.47103 -11.13855 -11.11024 -10.45304 -10.37922 -10.28888 -9.99881 -9.60476 -9.47108 -9.01934 -8.81801 -8.56635 -8.47102 -8.05346 -6.47410 -3.89067 1.14912 1.88918 2.12625 3.07251 3.13197 3.23102 3.25745 3.32634 3.53012 3.80907 3.99512 4.13692 4.53733 4.63289 4.64964 4.68506 4.75295 4.76904 4.84999 4.97179 4.97311 5.00434 5.09381 5.14500 5.21559 5.31636 5.42385 5.61125 5.72938 5.77801 5.87404 5.92503 5.99716 6.05849 6.08554 6.14673 6.27617 6.63501 6.86197 7.03376 7.24559 7.30367 7.50193 7.97385 8.36553 8.50313 8.92149 9.09278 9.44682 9.92832 10.69685 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018080 B = 0.002038 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.325535 B =13738.334375 C =14078.436201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 C 0.106 3.894 4 N -0.277 5.277 5 N -0.381 5.381 6 C 0.098 3.902 7 C 0.274 3.726 8 O -0.305 6.305 9 C 0.032 3.968 10 C -0.256 4.256 11 C 0.228 3.772 12 N -0.742 5.742 13 C 0.706 3.294 14 O -0.601 6.601 15 N -0.725 5.725 16 C 0.129 3.871 17 C 0.430 3.570 18 O -0.597 6.597 19 N -0.551 5.551 20 C -0.303 4.303 21 H 0.105 0.895 22 C 0.024 3.976 23 N -0.895 5.895 24 Si 0.932 3.068 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.281 1.281 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.047 0.953 37 H 0.106 0.894 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.396 0.604 42 H 0.406 0.594 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.396 0.604 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.761 2.355 -20.540 27.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.060 4.060 4 N -0.102 5.102 5 N -0.170 5.170 6 C -0.044 4.044 7 C 0.105 3.895 8 O -0.215 6.215 9 C -0.063 4.063 10 C -0.268 4.268 11 C 0.103 3.897 12 N -0.398 5.398 13 C 0.405 3.595 14 O -0.480 6.480 15 N -0.383 5.383 16 C 0.001 3.999 17 C 0.216 3.784 18 O -0.484 6.484 19 N -0.186 5.186 20 C -0.432 4.432 21 H 0.123 0.877 22 C -0.178 4.178 23 N -0.536 5.536 24 Si 0.759 3.241 25 H -0.192 1.192 26 H -0.206 1.206 27 H -0.207 1.207 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.066 0.934 37 H 0.124 0.876 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.229 0.771 42 H 0.243 0.757 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.230 0.770 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 18.971 2.536 -21.416 28.722 hybrid contribution -0.849 0.610 0.841 1.341 sum 18.123 3.146 -20.575 27.598 Atomic orbital electron populations 1.21715 0.93661 1.02448 1.02583 1.20041 0.96645 0.88136 1.03681 1.22102 0.97254 0.97081 0.89537 1.77480 1.21868 0.89145 1.21680 1.48939 1.51794 1.12114 1.04202 1.21890 1.01274 0.86178 0.95017 1.18890 1.00138 0.88842 0.81672 1.86161 1.26104 1.45556 1.63674 1.23180 0.78860 1.03369 1.00919 1.19714 1.17457 0.93061 0.96611 1.19074 0.83299 0.99996 0.87296 1.45160 1.15428 1.66730 1.12503 1.15844 0.82294 0.79444 0.81898 1.90894 1.52363 1.49408 1.55341 1.44771 1.13078 1.65444 1.14990 1.20761 0.94973 1.01240 0.82942 1.19806 0.88154 0.86051 0.84429 1.90492 1.65428 1.49041 1.43415 1.41793 1.13323 1.52347 1.11140 1.19769 0.88074 1.36759 0.98632 0.87681 1.25320 1.00448 0.96885 0.95177 1.69625 1.37769 1.42194 1.03967 0.85764 0.81532 0.78275 0.78548 1.19174 1.20646 1.20665 0.91972 0.92502 0.91673 0.90185 0.89444 0.90757 0.88948 0.89155 0.93420 0.87581 0.92292 0.91509 0.90780 0.77071 0.75682 0.90036 0.90100 0.77024 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.89 37.16 0.37 -0.90 16 2 C -0.05 -0.39 6.31 -27.88 -0.18 -0.57 16 3 C 0.11 1.12 6.47 -82.43 -0.53 0.59 16 4 N -0.28 -3.11 12.57 33.66 0.42 -2.68 16 5 N -0.38 -3.72 4.02 -68.28 -0.27 -3.99 16 6 C 0.10 0.56 11.44 59.85 0.68 1.24 16 7 C 0.27 2.88 6.93 -16.92 -0.12 2.76 16 8 O -0.31 -3.00 10.38 -18.99 -0.20 -3.19 16 9 C 0.03 0.20 11.13 101.05 1.12 1.32 16 10 C -0.26 -2.77 5.49 -104.85 -0.58 -3.35 16 11 C 0.23 2.68 5.94 -5.20 -0.03 2.65 16 12 N -0.74 -9.77 5.55 -66.42 -0.37 -10.14 16 13 C 0.71 11.85 8.57 -86.92 -0.74 11.10 16 14 O -0.60 -11.90 16.34 5.28 0.09 -11.82 16 15 N -0.73 -12.64 5.53 -66.42 -0.37 -13.01 16 16 C 0.13 2.47 6.15 -5.20 -0.03 2.43 16 17 C 0.43 10.03 7.85 -10.98 -0.09 9.94 16 18 O -0.60 -15.51 15.24 5.55 0.08 -15.43 16 19 N -0.55 -13.84 5.29 -10.96 -0.06 -13.90 16 20 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 21 H 0.11 3.01 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 23 N -0.90 -24.12 13.05 55.50 0.72 -23.39 16 24 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.69 7.25 -51.93 -0.38 0.31 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.42 8.05 -51.93 -0.42 0.00 16 36 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.86 7.25 -51.93 -0.38 0.48 16 41 H 0.40 4.76 8.48 -40.82 -0.35 4.41 16 42 H 0.41 6.97 7.45 -40.82 -0.30 6.66 16 43 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 45 H 0.40 9.57 7.90 -40.82 -0.32 9.24 16 46 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 399.74 15.07 6.02 6.02 Total: -1.00 -34.39 399.74 -6.03 -40.43 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -6.73 Total: 16.08 kcal Atomic # 6 Polarization: 19.67 SS G_CDS: -0.36 Total: 19.31 kcal Atomic # 7 Polarization: -67.19 SS G_CDS: 0.08 Total: -67.11 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.03 Total: -30.44 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.39 -6.03 -40.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345732078.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.864 kcal (2) G-P(sol) polarization free energy of solvation -34.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds