Wall clock time and date at job start Tue Mar 31 2020 22:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.46957 * 2 1 4 4 N 1.30832 * 125.86389 * 270.19533 * 3 2 1 5 5 N 1.40061 * 108.34200 * 180.23979 * 4 3 2 6 6 C 1.46506 * 126.03507 * 179.76228 * 5 4 3 7 7 C 1.35132 * 107.93114 * 359.74136 * 5 4 3 8 8 O 1.35760 * 126.19422 * 180.02562 * 7 5 4 9 9 C 1.42890 * 117.00515 * 274.91205 * 8 7 5 10 10 C 1.35950 * 107.61284 * 0.02562 * 7 5 4 11 11 C 1.50694 * 126.08409 * 179.97438 * 10 7 5 12 12 N 1.46498 * 109.47168 * 90.02103 * 11 10 7 13 13 C 1.34778 * 119.99876 * 180.02562 * 12 11 10 14 14 O 1.21592 * 120.00156 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00330 * 180.02562 * 13 12 11 16 16 C 1.46492 * 120.00505 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47413 * 179.97438 * 16 15 13 18 18 O 1.21293 * 120.00025 * 359.97438 * 17 16 15 19 19 N 1.34780 * 119.99869 * 180.02562 * 17 16 15 20 20 C 1.37093 * 119.99570 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00545 * 359.97438 * 20 19 17 22 22 C 1.38954 * 120.00196 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99426 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00401 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47128 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47169 * 119.99854 * 24 22 20 27 27 H 1.48500 * 109.47113 * 239.99934 * 24 22 20 28 28 H 1.09004 * 109.47031 * 299.99291 * 1 2 3 29 29 H 1.08996 * 109.47350 * 60.00183 * 1 2 3 30 30 H 1.09000 * 109.46929 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47060 * 239.99961 * 2 1 3 32 32 H 1.08999 * 109.47176 * 120.00560 * 2 1 3 33 33 H 1.08994 * 109.47269 * 274.14461 * 6 5 4 34 34 H 1.09002 * 109.47177 * 34.14441 * 6 5 4 35 35 H 1.08998 * 109.47332 * 154.14567 * 6 5 4 36 36 H 1.09001 * 109.46982 * 64.69374 * 9 8 7 37 37 H 1.08999 * 109.47476 * 184.69249 * 9 8 7 38 38 H 1.09003 * 109.47120 * 304.69601 * 9 8 7 39 39 H 1.09003 * 109.47059 * 330.01861 * 11 10 7 40 40 H 1.08998 * 109.46978 * 210.02764 * 11 10 7 41 41 H 0.96997 * 120.00442 * 0.02562 * 12 11 10 42 42 H 0.97007 * 119.99497 * 359.97438 * 15 13 12 43 43 H 1.08999 * 109.47195 * 299.99748 * 16 15 13 44 44 H 1.09005 * 109.47438 * 59.99777 * 16 15 13 45 45 H 0.96989 * 120.00222 * 359.97438 * 19 17 16 46 46 H 0.97004 * 120.00084 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2844 2.1447 -1.0603 5 7 2.7361 3.4016 -0.6386 6 6 3.1325 4.5115 -1.5089 7 6 2.7414 3.4100 0.7127 8 8 3.1141 4.4463 1.5065 9 6 4.5077 4.5737 1.7955 10 6 2.3059 2.1928 1.1333 11 6 2.1509 1.7520 2.5660 12 7 0.8003 2.0749 3.0328 13 6 0.4324 1.7708 4.2933 14 8 1.2215 1.2290 5.0430 15 7 -0.8102 2.0673 4.7227 16 6 -1.2104 1.7363 6.0925 17 6 -2.6360 2.1697 6.3181 18 8 -3.2566 2.7031 5.4228 19 7 -3.2210 1.9656 7.5150 20 6 -4.5181 2.3594 7.7199 21 1 -5.0710 2.8336 6.9225 22 6 -5.1215 2.1485 8.9537 23 7 -4.4487 1.5719 9.9241 24 14 -6.8886 2.6857 9.2333 25 1 -7.4193 3.3065 7.9931 26 1 -7.7149 1.5041 9.5887 27 1 -6.9362 3.6741 10.3405 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.1806 4.3991 -1.7865 34 1 2.5161 4.5064 -2.4079 35 1 2.9959 5.4547 -0.9800 36 1 5.0516 4.7865 0.8751 37 1 4.6589 5.3885 2.5035 38 1 4.8756 3.6434 2.2281 39 1 2.8831 2.2689 3.1864 40 1 2.3116 0.6761 2.6345 41 1 0.1709 2.5075 2.4349 42 1 -1.4397 2.5000 4.1246 43 1 -1.1291 0.6601 6.2448 44 1 -0.5582 2.2532 6.7965 45 1 -2.7247 1.5394 8.2310 46 1 -4.8700 1.4243 10.7853 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345732078.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:26 Heat of formation + Delta-G solvation = -54.087823 kcal Electronic energy + Delta-G solvation = -29094.247538 eV Core-core repulsion = 24827.285080 eV Total energy + Delta-G solvation = -4266.962459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.70279 -41.07592 -39.95959 -39.19793 -36.53045 -36.15228 -35.19487 -35.10097 -33.34846 -32.77653 -31.35004 -29.47772 -28.48949 -27.58102 -26.54730 -25.58330 -24.26025 -21.94185 -21.85235 -21.32687 -20.80254 -20.09071 -19.58755 -18.52908 -17.63117 -17.37367 -17.19697 -17.16236 -16.73021 -16.45389 -15.90430 -15.81694 -15.70067 -15.69110 -15.16947 -15.12447 -15.03753 -14.70282 -14.19415 -13.99352 -13.92071 -13.83926 -13.53046 -13.43479 -13.27186 -12.97729 -12.89173 -12.75469 -12.42341 -12.35550 -12.20235 -12.10138 -11.81261 -11.55808 -11.42704 -11.15964 -10.52398 -10.35660 -10.19816 -10.07494 -9.74236 -9.61312 -8.48905 -5.98737 0.41139 1.22765 1.26509 1.36674 1.44150 1.58165 1.90620 1.92863 2.19578 2.31286 2.52733 3.11729 3.18415 3.31123 3.44830 3.90042 3.96695 4.15926 4.19758 4.25138 4.27100 4.30471 4.34101 4.45969 4.48517 4.51783 4.57092 4.60956 4.66117 4.70746 4.75888 4.92900 5.09157 5.18338 5.21587 5.34502 5.36596 5.41736 5.50192 5.56340 5.94442 6.00522 6.34921 6.51118 6.54710 7.06171 7.07280 7.46006 7.59402 7.97896 8.68315 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018080 B = 0.002038 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.325535 B =13738.334375 C =14078.436201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.045 4.045 3 C 0.104 3.896 4 N -0.298 5.298 5 N -0.380 5.380 6 C 0.088 3.912 7 C 0.275 3.725 8 O -0.321 6.321 9 C 0.026 3.974 10 C -0.271 4.271 11 C 0.233 3.767 12 N -0.726 5.726 13 C 0.708 3.292 14 O -0.630 6.630 15 N -0.726 5.726 16 C 0.143 3.857 17 C 0.434 3.566 18 O -0.624 6.624 19 N -0.560 5.560 20 C -0.335 4.335 21 H 0.085 0.915 22 C -0.012 4.012 23 N -0.916 5.916 24 Si 0.997 3.003 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.271 1.271 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.122 0.878 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.403 0.597 42 H 0.408 0.592 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.399 0.601 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.280 2.717 -21.173 28.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.084 4.084 3 C -0.062 4.062 4 N -0.123 5.123 5 N -0.170 5.170 6 C -0.051 4.051 7 C 0.104 3.896 8 O -0.231 6.231 9 C -0.069 4.069 10 C -0.284 4.284 11 C 0.109 3.891 12 N -0.381 5.381 13 C 0.407 3.593 14 O -0.512 6.512 15 N -0.383 5.383 16 C 0.014 3.986 17 C 0.221 3.779 18 O -0.512 6.512 19 N -0.196 5.196 20 C -0.464 4.464 21 H 0.103 0.897 22 C -0.212 4.212 23 N -0.556 5.556 24 Si 0.820 3.180 25 H -0.195 1.195 26 H -0.196 1.196 27 H -0.197 1.197 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.084 0.916 37 H 0.140 0.860 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.237 0.763 42 H 0.245 0.755 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.233 0.767 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 19.522 2.907 -22.089 29.623 hybrid contribution -0.910 0.562 0.961 1.438 sum 18.613 3.468 -21.128 28.370 Atomic orbital electron populations 1.21677 0.93840 1.02889 1.01626 1.20102 0.96371 0.87402 1.04510 1.22343 0.96898 0.97696 0.89237 1.77437 1.22739 0.89987 1.22178 1.49222 1.51033 1.12370 1.04389 1.22214 1.02560 0.85447 0.94904 1.18982 0.99583 0.88794 0.82196 1.86130 1.28124 1.45242 1.63610 1.23412 0.77241 1.03916 1.02283 1.19618 1.18955 0.93755 0.96023 1.19065 0.82061 1.00080 0.87906 1.45123 1.16153 1.65627 1.11239 1.15883 0.81612 0.79167 0.82602 1.90874 1.53013 1.50839 1.56437 1.44703 1.13495 1.65738 1.14382 1.20576 0.91956 1.01864 0.84179 1.20455 0.89456 0.84552 0.83388 1.90470 1.66689 1.49950 1.44136 1.41835 1.12986 1.52896 1.11868 1.19755 0.89303 1.38449 0.98910 0.89675 1.26126 1.04242 0.96402 0.94471 1.69688 1.39282 1.42312 1.04350 0.84813 0.76670 0.78197 0.78302 1.19508 1.19616 1.19662 0.93342 0.92950 0.90548 0.89080 0.88868 0.88831 0.88251 0.88007 0.91592 0.86013 0.92500 0.92076 0.90540 0.76257 0.75476 0.88882 0.89093 0.76665 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.89 71.98 0.71 -1.66 16 2 C -0.04 -0.72 6.31 29.85 0.19 -0.53 16 3 C 0.10 2.11 6.47 43.09 0.28 2.38 16 4 N -0.30 -6.40 12.57 -47.42 -0.60 -6.99 16 5 N -0.38 -6.94 4.02 -481.25 -1.93 -8.87 16 6 C 0.09 0.85 11.44 127.77 1.46 2.31 16 7 C 0.28 5.50 6.93 83.65 0.58 6.08 16 8 O -0.32 -5.90 10.38 -90.87 -0.94 -6.85 16 9 C 0.03 0.28 11.13 113.37 1.26 1.54 16 10 C -0.27 -5.68 5.49 -20.01 -0.11 -5.79 16 11 C 0.23 5.35 5.94 85.63 0.51 5.85 16 12 N -0.73 -18.67 5.55 -482.30 -2.68 -21.35 16 13 C 0.71 23.28 8.57 179.05 1.53 24.82 16 14 O -0.63 -24.53 16.34 -4.01 -0.07 -24.60 16 15 N -0.73 -24.88 5.53 -482.31 -2.67 -27.54 16 16 C 0.14 5.36 6.15 85.63 0.53 5.89 16 17 C 0.43 20.35 7.85 87.66 0.69 21.04 16 18 O -0.62 -32.74 15.24 -3.07 -0.05 -32.79 16 19 N -0.56 -28.43 5.29 -306.98 -1.62 -30.05 16 20 C -0.33 -18.60 9.68 84.04 0.81 -17.79 16 21 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 22 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 23 N -0.92 -48.96 13.05 21.66 0.28 -48.68 16 24 Si 1.00 42.09 29.55 68.60 2.03 44.12 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 28 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.38 7.25 -2.39 -0.02 1.36 16 33 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.10 0.74 8.05 -2.39 -0.02 0.72 16 36 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.08 1.72 7.25 -2.39 -0.02 1.71 16 41 H 0.40 9.44 8.48 -92.71 -0.79 8.65 16 42 H 0.41 13.85 7.45 -92.70 -0.69 13.16 16 43 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 44 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16 45 H 0.40 19.44 7.90 -92.72 -0.73 18.71 16 46 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -72.60 399.74 -0.50 -73.10 By element: Atomic # 1 Polarization: 47.68 SS G_CDS: -1.17 Total: 46.52 kcal Atomic # 6 Polarization: 35.07 SS G_CDS: 8.91 Total: 43.98 kcal Atomic # 7 Polarization: -134.27 SS G_CDS: -9.22 Total: -143.49 kcal Atomic # 8 Polarization: -63.18 SS G_CDS: -1.06 Total: -64.23 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -72.60 -0.50 -73.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345732078.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.014 kcal (2) G-P(sol) polarization free energy of solvation -72.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds