Wall clock time and date at job start Tue Mar 31 2020 22:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47083 * 2 1 4 4 H 1.09002 * 109.47220 * 54.77137 * 3 2 1 5 5 N 1.46901 * 109.47072 * 294.77996 * 3 2 1 6 6 C 1.39210 * 111.00370 * 97.47808 * 5 3 2 7 7 C 1.36172 * 126.21667 * 62.27869 * 6 5 3 8 8 N 1.48035 * 126.09469 * 359.97353 * 7 6 5 9 9 O 1.21809 * 119.99553 * 83.34084 * 8 7 6 10 10 O 1.21801 * 120.00446 * 263.33844 * 8 7 6 11 11 C 1.39776 * 107.81088 * 179.84605 * 7 6 5 12 12 C 1.50702 * 125.83574 * 180.15875 * 11 7 6 13 13 N 1.30841 * 108.32292 * 0.42421 * 11 7 6 14 14 N 1.35248 * 126.22146 * 242.58612 * 6 5 3 15 15 C 1.46497 * 126.04344 * 0.02562 * 14 6 5 16 16 C 1.50696 * 109.47470 * 174.77833 * 3 2 1 17 17 O 1.21284 * 120.00072 * 119.99226 * 16 3 2 18 18 N 1.34774 * 119.99911 * 300.00074 * 16 3 2 19 19 C 1.46500 * 120.00090 * 359.97438 * 18 16 3 20 20 C 1.46500 * 120.00120 * 179.97438 * 18 16 3 21 21 C 1.50699 * 109.46704 * 89.99985 * 20 18 16 22 22 H 1.07997 * 120.00421 * 359.97438 * 21 20 18 23 23 C 1.37881 * 119.99763 * 179.97438 * 21 20 18 24 24 N 1.31522 * 119.99993 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00101 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47660 * 89.99695 * 25 23 21 27 27 H 1.48500 * 109.47036 * 209.99946 * 25 23 21 28 28 H 1.48501 * 109.46860 * 329.99205 * 25 23 21 29 29 H 1.09000 * 109.47070 * 54.39408 * 1 2 3 30 30 H 1.08998 * 109.47643 * 294.39222 * 1 2 3 31 31 H 1.09007 * 109.47237 * 174.38885 * 1 2 3 32 32 H 1.08996 * 109.47021 * 120.00145 * 2 1 3 33 33 H 1.08997 * 109.46827 * 239.99687 * 2 1 3 34 34 H 1.00903 * 111.00099 * 333.52884 * 5 3 2 35 35 H 1.09002 * 109.47057 * 270.32521 * 12 11 7 36 36 H 1.08992 * 109.47071 * 30.33034 * 12 11 7 37 37 H 1.09004 * 109.46854 * 150.32924 * 12 11 7 38 38 H 1.09006 * 109.47126 * 95.64270 * 15 14 6 39 39 H 1.09004 * 109.47131 * 215.63564 * 15 14 6 40 40 H 1.08995 * 109.47346 * 335.64337 * 15 14 6 41 41 H 1.09002 * 109.47416 * 89.99657 * 19 18 16 42 42 H 1.09004 * 109.47449 * 210.00076 * 19 18 16 43 43 H 1.09002 * 109.46826 * 329.99866 * 19 18 16 44 44 H 1.09000 * 109.47250 * 209.99675 * 20 18 16 45 45 H 1.09002 * 109.47052 * 330.00412 * 20 18 16 46 46 H 0.96999 * 119.99663 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6022 1.9827 0.8395 5 7 1.6559 2.0976 -1.2575 6 6 0.4979 2.8526 -1.0933 7 6 0.3469 3.9251 -0.2680 8 7 1.3862 4.4975 0.6172 9 8 2.2000 5.2861 0.1702 10 8 1.4277 4.1801 1.7924 11 6 -0.9635 4.3910 -0.4077 12 6 -1.5640 5.5670 0.3187 13 7 -1.5813 3.6280 -1.2726 14 7 -0.6834 2.6506 -1.7203 15 6 -0.9728 1.5958 -2.6947 16 6 3.5414 1.4445 0.1293 17 8 4.2243 1.9426 -0.7405 18 7 4.1253 0.8928 1.2114 19 6 3.3004 0.2915 2.2623 20 6 5.5849 0.8943 1.3369 21 6 6.0264 2.1464 2.0499 22 1 5.2932 2.8690 2.3764 23 6 7.3666 2.3695 2.2852 24 7 7.7520 3.4625 2.9070 25 14 8.6348 1.1201 1.7198 26 1 9.0764 1.4519 0.3414 27 1 9.8037 1.1523 2.6352 28 1 8.0327 -0.2373 1.7336 29 1 -0.3633 0.5983 -0.8355 30 1 -0.3634 0.4244 0.9359 31 1 -0.3634 -1.0228 -0.1005 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.5447 1.4215 -1.9982 35 1 -2.0062 5.2281 1.2556 36 1 -0.7856 6.3004 0.5286 37 1 -2.3347 6.0229 -0.3029 38 1 -1.4357 0.7494 -2.1873 39 1 -1.6531 1.9800 -3.4548 40 1 -0.0451 1.2730 -3.1671 41 1 3.1383 -0.7629 2.0384 42 1 3.8091 0.3852 3.2218 43 1 2.3400 0.8049 2.3086 44 1 5.9015 0.0208 1.9070 45 1 6.0349 0.8633 0.3446 46 1 8.6947 3.6192 3.0729 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345812271.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:51 Heat of formation + Delta-G solvation = 73.391978 kcal Electronic energy + Delta-G solvation = -31835.843123 eV Core-core repulsion = 27574.408603 eV Total energy + Delta-G solvation = -4261.434520 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.62610 -41.19766 -39.77002 -37.12628 -36.05047 -35.11041 -34.59644 -33.16618 -32.33146 -30.31355 -30.05770 -28.93490 -27.43830 -26.45686 -25.81557 -24.73764 -22.76256 -21.97172 -21.14952 -20.88696 -18.89053 -18.81199 -18.30563 -17.67939 -16.91060 -16.87461 -16.68647 -16.45438 -15.76297 -15.14377 -14.82811 -14.73277 -14.61834 -14.14856 -13.97950 -13.81819 -13.41673 -13.32831 -12.99975 -12.88058 -12.74355 -12.47180 -12.38838 -12.29805 -12.08616 -11.77504 -11.55277 -11.49742 -11.22069 -11.10508 -10.90200 -10.86765 -10.74404 -10.65967 -10.49449 -10.12031 -9.60725 -9.46055 -9.09234 -8.76761 -8.51063 -7.74994 -5.99039 -3.98292 0.83597 0.99220 1.26889 1.77626 2.08916 2.93839 3.14286 3.33144 3.38505 3.40682 3.73644 3.80444 4.18509 4.36141 4.42539 4.45688 4.48093 4.51107 4.56274 4.62621 4.77638 4.91427 5.03814 5.15961 5.18036 5.18845 5.31143 5.32259 5.35911 5.47685 5.52906 5.58509 5.71948 5.73910 5.83253 6.07745 6.16907 6.51760 6.67293 6.72265 6.91964 6.94214 7.27950 7.66237 7.96732 8.14016 8.54111 8.86337 9.08429 9.59467 11.14307 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.003928 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.138530 B = 7127.293953 C = 8099.661263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.161 4.161 3 C 0.063 3.937 4 H 0.113 0.887 5 N -0.574 5.574 6 C 0.355 3.645 7 C -0.203 4.203 8 N 0.053 4.947 9 O -0.115 6.115 10 O -0.148 6.148 11 C 0.144 3.856 12 C -0.085 4.085 13 N -0.271 5.271 14 N -0.383 5.383 15 C 0.090 3.910 16 C 0.513 3.487 17 O -0.511 6.511 18 N -0.591 5.591 19 C 0.077 3.923 20 C 0.218 3.782 21 C -0.530 4.530 22 H 0.079 0.921 23 C 0.074 3.926 24 N -0.893 5.893 25 Si 0.874 3.126 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.267 1.267 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.370 0.630 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.049 0.951 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.031 0.969 45 H 0.036 0.964 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.999 -8.013 -8.013 25.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.200 4.200 3 C -0.047 4.047 4 H 0.130 0.870 5 N -0.204 5.204 6 C 0.127 3.873 7 C -0.299 4.299 8 N 0.585 4.415 9 O -0.344 6.344 10 O -0.367 6.367 11 C -0.025 4.025 12 C -0.144 4.144 13 N -0.094 5.094 14 N -0.169 5.169 15 C -0.050 4.050 16 C 0.297 3.703 17 O -0.385 6.385 18 N -0.324 5.324 19 C -0.067 4.067 20 C 0.098 3.902 21 C -0.568 4.568 22 H 0.097 0.903 23 C -0.128 4.128 24 N -0.531 5.531 25 Si 0.701 3.299 26 H -0.200 1.200 27 H -0.211 1.211 28 H -0.192 1.192 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.195 0.805 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.111 0.889 41 H 0.067 0.933 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.049 0.951 45 H 0.054 0.946 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.645 -7.860 -9.499 26.666 hybrid contribution 1.253 -0.933 0.221 1.578 sum -22.392 -8.793 -9.279 25.784 Atomic orbital electron populations 1.22112 0.95104 1.02658 1.02546 1.22474 0.96595 0.95016 1.05903 1.22084 0.97213 0.95457 0.89986 0.86951 1.57130 1.24151 1.29726 1.09357 1.18755 0.83279 0.93901 0.91360 1.19925 0.92638 1.05862 1.11522 1.42390 0.99552 0.99125 1.00390 1.94617 1.32678 1.27871 1.79223 1.94546 1.78124 1.64035 0.99958 1.21946 0.88590 0.96993 0.94975 1.20422 1.01847 0.92268 0.99848 1.77547 1.13074 1.02398 1.16356 1.48711 1.05881 1.26158 1.36132 1.22128 1.04020 0.87935 0.90908 1.19684 0.87784 0.79728 0.83148 1.90718 1.63951 1.43331 1.40509 1.47747 1.08873 1.56845 1.18922 1.21862 0.95455 0.96264 0.93070 1.19702 0.74694 0.97990 0.97791 1.21344 0.93631 1.04807 1.37059 0.90312 1.24846 0.98101 0.95243 0.94650 1.69912 1.16177 1.25478 1.41524 0.86897 0.81676 0.82148 0.79175 1.19975 1.21074 1.19229 0.93236 0.91830 0.91188 0.87578 0.90345 0.80471 0.88926 0.89973 0.89176 0.89124 0.87875 0.88937 0.93285 0.89922 0.92171 0.95080 0.94603 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 9.55 37.16 0.35 -0.93 16 2 C -0.16 -1.61 4.94 -26.73 -0.13 -1.75 16 3 C 0.06 0.94 1.66 -68.87 -0.11 0.83 16 4 H 0.11 1.82 4.96 -51.93 -0.26 1.56 16 5 N -0.57 -8.09 5.72 -54.83 -0.31 -8.40 16 6 C 0.36 4.76 5.42 -153.41 -0.83 3.93 16 7 C -0.20 -3.13 6.09 -80.11 -0.49 -3.62 16 8 N 0.05 1.01 4.04 33.88 0.14 1.14 16 9 O -0.12 -2.49 19.26 -29.46 -0.57 -3.05 16 10 O -0.15 -2.91 18.15 -29.46 -0.53 -3.44 16 11 C 0.14 1.83 7.21 -82.44 -0.59 1.23 16 12 C -0.09 -0.81 10.44 36.01 0.38 -0.43 16 13 N -0.27 -3.19 12.56 33.65 0.42 -2.76 16 14 N -0.38 -3.94 3.52 -67.24 -0.24 -4.18 16 15 C 0.09 0.48 9.97 59.85 0.60 1.07 16 16 C 0.51 10.54 7.14 -10.99 -0.08 10.46 16 17 O -0.51 -12.83 16.01 5.55 0.09 -12.74 16 18 N -0.59 -12.15 2.86 -182.95 -0.52 -12.67 16 19 C 0.08 1.17 8.81 59.85 0.53 1.70 16 20 C 0.22 5.38 4.23 -5.19 -0.02 5.35 16 21 C -0.53 -15.65 9.94 -34.44 -0.34 -15.99 16 22 H 0.08 2.60 8.06 -52.49 -0.42 2.18 16 23 C 0.07 2.21 5.47 -17.81 -0.10 2.11 16 24 N -0.89 -28.26 13.96 55.43 0.77 -27.48 16 25 Si 0.87 21.82 27.47 -169.99 -4.67 17.15 16 26 H -0.27 -6.91 7.11 56.52 0.40 -6.50 16 27 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 29 H 0.05 0.36 2.53 -51.93 -0.13 0.23 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.11 1.03 4.45 -51.93 -0.23 0.80 16 33 H 0.08 0.70 8.02 -51.93 -0.42 0.29 16 34 H 0.37 3.91 6.62 -39.29 -0.26 3.65 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.33 6.77 -51.93 -0.35 -0.02 16 39 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.34 6.86 -51.93 -0.36 -0.02 16 41 H 0.05 0.57 6.86 -51.93 -0.36 0.21 16 42 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 43 H 0.06 0.81 6.06 -51.93 -0.31 0.49 16 44 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 45 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 46 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 375.54 15.07 5.66 5.66 Total: -1.00 -39.48 375.54 -6.55 -46.03 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.95 Total: 0.78 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -0.85 Total: 3.97 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.26 Total: -54.35 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -1.01 Total: -19.24 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -39.48 -6.55 -46.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345812271.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.423 kcal (2) G-P(sol) polarization free energy of solvation -39.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds