Wall clock time and date at job start Tue Mar 31 2020 22:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47209 * 2 1 4 4 H 1.09000 * 109.47606 * 175.57424 * 3 2 1 5 5 N 1.46911 * 109.47003 * 295.57251 * 3 2 1 6 6 C 1.39204 * 110.99886 * 295.00148 * 5 3 2 7 7 C 1.36176 * 126.21960 * 332.34864 * 6 5 3 8 8 N 1.48037 * 126.09496 * 359.97438 * 7 6 5 9 9 O 1.21800 * 119.99518 * 90.00377 * 8 7 6 10 10 O 1.21801 * 120.00058 * 270.00439 * 8 7 6 11 11 C 1.39777 * 107.80969 * 179.84649 * 7 6 5 12 12 C 1.50703 * 125.83519 * 180.16165 * 11 7 6 13 13 N 1.30838 * 108.32248 * 0.41945 * 11 7 6 14 14 N 1.35247 * 126.22065 * 152.65735 * 6 5 3 15 15 C 1.46496 * 126.04108 * 0.02562 * 14 6 5 16 16 C 1.50700 * 109.47353 * 55.57196 * 3 2 1 17 17 O 1.21281 * 120.00027 * 248.03437 * 16 3 2 18 18 N 1.34780 * 120.00072 * 68.03041 * 16 3 2 19 19 C 1.46494 * 119.99605 * 5.02404 * 18 16 3 20 20 C 1.46490 * 120.00029 * 185.02385 * 18 16 3 21 21 C 1.50697 * 109.47291 * 89.99940 * 20 18 16 22 22 H 1.08001 * 120.00426 * 359.97438 * 21 20 18 23 23 C 1.37883 * 120.00330 * 179.97438 * 21 20 18 24 24 N 1.31513 * 119.99983 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00123 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47191 * 60.00255 * 25 23 21 27 27 H 1.48498 * 109.46937 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47243 * 300.00156 * 25 23 21 29 29 H 1.09003 * 109.46866 * 177.49670 * 1 2 3 30 30 H 1.08995 * 109.46928 * 297.49084 * 1 2 3 31 31 H 1.08994 * 109.47067 * 57.49769 * 1 2 3 32 32 H 1.09002 * 109.47277 * 120.00131 * 2 1 3 33 33 H 1.09000 * 109.47535 * 239.99919 * 2 1 3 34 34 H 1.00897 * 110.99459 * 58.95632 * 5 3 2 35 35 H 1.08998 * 109.47123 * 270.32314 * 12 11 7 36 36 H 1.08996 * 109.47190 * 30.32444 * 12 11 7 37 37 H 1.09002 * 109.46626 * 150.32458 * 12 11 7 38 38 H 1.09000 * 109.46808 * 94.88089 * 15 14 6 39 39 H 1.09003 * 109.47256 * 214.88001 * 15 14 6 40 40 H 1.09004 * 109.47428 * 334.88119 * 15 14 6 41 41 H 1.08996 * 109.47415 * 88.86021 * 19 18 16 42 42 H 1.09004 * 109.47312 * 208.85768 * 19 18 16 43 43 H 1.09002 * 109.47555 * 328.85572 * 19 18 16 44 44 H 1.09000 * 109.47183 * 209.99766 * 20 18 16 45 45 H 1.09006 * 109.47561 * 330.00004 * 20 18 16 46 46 H 0.96997 * 120.00281 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1271 1.4435 0.0793 5 7 1.6395 2.1034 -1.2494 6 6 2.2581 1.5118 -2.3472 7 6 3.4569 0.8659 -2.3439 8 7 4.3374 0.6673 -1.1705 9 8 4.2092 -0.3235 -0.4738 10 8 5.1899 1.4947 -0.9018 11 6 3.7065 0.4213 -3.6454 12 6 4.9221 -0.3462 -4.0976 13 7 2.7070 0.7901 -4.4049 14 7 1.7804 1.4791 -3.6121 15 6 0.5174 2.0617 -4.0718 16 6 1.4501 2.1839 1.1719 17 8 0.6485 3.0746 0.9848 18 7 1.8133 1.8571 2.4281 19 6 2.8615 0.8583 2.6510 20 6 1.1599 2.5007 3.5703 21 6 -0.0461 1.6947 3.9788 22 1 -0.3008 0.7933 3.4411 23 6 -0.8247 2.1079 5.0392 24 7 -0.5151 3.2057 5.6938 25 14 -2.3192 1.1083 5.5459 26 1 -1.8922 -0.2620 5.9270 27 1 -2.9816 1.7608 6.7038 28 1 -3.2721 1.0319 4.4096 29 1 -0.3633 -1.0267 -0.0449 30 1 -0.3633 0.4744 0.9116 31 1 -0.3633 0.5522 -0.8667 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 0.6361 2.1002 -1.3545 35 1 5.6973 0.3530 -4.4112 36 1 5.2941 -0.9557 -3.2742 37 1 4.6540 -0.9908 -4.9347 38 1 0.7015 3.0590 -4.4713 39 1 0.0889 1.4315 -4.8512 40 1 -0.1780 2.1281 -3.2350 41 1 3.8336 1.3507 2.6739 42 1 2.6870 0.3544 3.6017 43 1 2.8438 0.1265 1.8433 44 1 1.8590 2.5567 4.4047 45 1 0.8467 3.5066 3.2905 46 1 -1.0629 3.4966 6.4394 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345812273.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:54 Heat of formation + Delta-G solvation = 68.440707 kcal Electronic energy + Delta-G solvation = -31898.318123 eV Core-core repulsion = 27636.668900 eV Total energy + Delta-G solvation = -4261.649223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.90289 -41.47852 -39.84912 -36.99342 -36.44061 -35.01121 -34.69078 -32.93230 -32.34552 -30.38604 -29.90975 -28.49877 -27.41056 -26.29898 -25.69845 -24.89971 -23.28762 -22.04330 -21.22127 -20.98185 -18.99994 -18.75988 -18.58742 -17.62943 -17.20517 -16.64252 -16.48890 -16.08987 -15.73592 -15.34446 -15.09080 -14.67520 -14.49387 -14.08984 -13.99360 -13.53448 -13.49597 -13.33978 -13.01533 -12.89226 -12.68338 -12.33990 -12.23308 -12.00787 -11.84752 -11.76420 -11.65948 -11.37553 -11.27098 -11.10859 -11.05056 -10.99439 -10.88794 -10.71959 -10.55744 -10.21150 -9.71201 -9.61720 -9.12343 -8.74191 -8.49136 -7.74355 -6.09986 -4.15750 0.52832 1.04790 1.12804 1.72828 1.93124 3.00509 3.14949 3.26914 3.31930 3.34228 3.76524 3.85081 4.07765 4.36499 4.49761 4.50832 4.55597 4.68153 4.69833 4.76371 4.95112 5.07870 5.10426 5.14115 5.23242 5.24603 5.29169 5.48857 5.54380 5.61225 5.73829 5.87330 5.96136 5.99112 6.10827 6.26905 6.31448 6.35413 6.56014 6.93433 6.98206 7.36550 7.43389 7.63627 7.85177 8.15340 8.25449 8.75428 8.92314 9.49208 10.98059 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018071 B = 0.003507 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.089659 B = 7982.079627 C = 8627.028984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.155 4.155 3 C 0.054 3.946 4 H 0.105 0.895 5 N -0.573 5.573 6 C 0.369 3.631 7 C -0.239 4.239 8 N 0.064 4.936 9 O -0.143 6.143 10 O -0.143 6.143 11 C 0.149 3.851 12 C -0.085 4.085 13 N -0.273 5.273 14 N -0.375 5.375 15 C 0.099 3.901 16 C 0.522 3.478 17 O -0.531 6.531 18 N -0.590 5.590 19 C 0.063 3.937 20 C 0.246 3.754 21 C -0.530 4.530 22 H 0.057 0.943 23 C 0.063 3.937 24 N -0.892 5.892 25 Si 0.898 3.102 26 H -0.276 1.276 27 H -0.286 1.286 28 H -0.277 1.277 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.040 0.960 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.381 0.619 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.051 0.949 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.036 0.964 45 H 0.046 0.954 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.874 -8.016 -19.479 22.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.193 4.193 3 C -0.058 4.058 4 H 0.122 0.878 5 N -0.204 5.204 6 C 0.138 3.862 7 C -0.336 4.336 8 N 0.590 4.410 9 O -0.363 6.363 10 O -0.363 6.363 11 C -0.021 4.021 12 C -0.143 4.143 13 N -0.095 5.095 14 N -0.160 5.160 15 C -0.041 4.041 16 C 0.306 3.694 17 O -0.408 6.408 18 N -0.321 5.321 19 C -0.080 4.080 20 C 0.127 3.873 21 C -0.569 4.569 22 H 0.076 0.924 23 C -0.140 4.140 24 N -0.531 5.531 25 Si 0.725 3.275 26 H -0.201 1.201 27 H -0.211 1.211 28 H -0.203 1.203 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.212 0.788 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.650 -6.695 -21.083 22.830 hybrid contribution -0.809 -0.972 1.402 1.888 sum 4.841 -7.667 -19.680 21.669 Atomic orbital electron populations 1.21870 0.94451 1.02524 1.02774 1.22410 0.97473 0.94004 1.05454 1.22220 1.02175 0.93922 0.87440 0.87761 1.57004 1.15715 1.48603 0.99107 1.18681 0.91834 0.89701 0.86034 1.19800 0.98838 1.25994 0.88973 1.42484 0.99384 0.99347 0.99779 1.94537 1.75087 1.19373 1.47326 1.94592 1.27474 1.39210 1.75073 1.21880 0.96472 0.96245 0.87514 1.20408 0.91572 0.99278 1.03079 1.77586 1.00324 1.15643 1.15950 1.48247 1.18757 1.45221 1.03769 1.22083 0.79870 0.99815 1.02348 1.19395 0.82689 0.83809 0.83499 1.90683 1.34711 1.30861 1.84587 1.48039 1.37249 1.40550 1.06294 1.22054 0.90432 0.92152 1.03366 1.19363 0.92241 0.94297 0.81390 1.21355 1.10728 1.09807 1.14968 0.92432 1.24930 0.97763 0.95132 0.96147 1.69919 1.39391 1.22463 1.21295 0.86566 0.82724 0.80116 0.78053 1.20142 1.21131 1.20276 0.91479 0.90260 0.94101 0.87654 0.90489 0.78798 0.89054 0.90069 0.89160 0.89315 0.88041 0.88971 0.93043 0.90128 0.91174 0.94586 0.93637 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.36 37.16 0.35 -1.86 16 2 C -0.15 -2.16 3.78 -26.73 -0.10 -2.26 16 3 C 0.05 0.87 1.45 -68.86 -0.10 0.76 16 4 H 0.10 1.73 3.82 -51.93 -0.20 1.53 16 5 N -0.57 -8.37 5.96 -54.83 -0.33 -8.70 16 6 C 0.37 4.87 6.38 -153.41 -0.98 3.89 16 7 C -0.24 -3.23 5.46 -80.10 -0.44 -3.67 16 8 N 0.06 0.92 2.38 33.89 0.08 1.00 16 9 O -0.14 -2.03 15.87 -29.46 -0.47 -2.50 16 10 O -0.14 -2.25 18.76 -29.46 -0.55 -2.80 16 11 C 0.15 1.72 7.21 -82.44 -0.59 1.13 16 12 C -0.08 -0.68 10.44 36.01 0.38 -0.31 16 13 N -0.27 -3.19 12.56 33.65 0.42 -2.77 16 14 N -0.37 -4.13 4.02 -67.24 -0.27 -4.40 16 15 C 0.10 0.68 11.41 59.84 0.68 1.36 16 16 C 0.52 10.70 5.59 -10.98 -0.06 10.64 16 17 O -0.53 -12.71 15.81 5.56 0.09 -12.62 16 18 N -0.59 -12.43 2.86 -182.96 -0.52 -12.95 16 19 C 0.06 1.06 9.95 59.84 0.60 1.66 16 20 C 0.25 6.32 5.19 -5.20 -0.03 6.29 16 21 C -0.53 -14.46 9.39 -34.44 -0.32 -14.79 16 22 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 23 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 24 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 25 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.39 7.19 -51.93 -0.37 1.02 16 31 H 0.04 0.50 6.62 -51.93 -0.34 0.16 16 32 H 0.11 1.47 5.38 -51.93 -0.28 1.19 16 33 H 0.08 1.01 5.79 -51.93 -0.30 0.71 16 34 H 0.38 5.11 5.47 -39.29 -0.21 4.89 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.53 6.97 -51.93 -0.36 0.17 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.08 1.33 8.06 -51.93 -0.42 0.91 16 43 H 0.07 1.03 4.06 -51.93 -0.21 0.82 16 44 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 45 H 0.05 1.32 7.36 -51.93 -0.38 0.94 16 46 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 375.37 15.07 5.66 5.66 Total: -1.00 -33.68 375.37 -6.90 -40.58 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.01 Total: 4.10 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -0.72 Total: 4.50 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.12 Total: -53.11 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.93 Total: -17.93 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.68 -6.90 -40.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345812273.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.024 kcal (2) G-P(sol) polarization free energy of solvation -33.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds