Wall clock time and date at job start Tue Mar 31 2020 22:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47209 * 2 1 4 4 H 1.09000 * 109.47606 * 175.57424 * 3 2 1 5 5 N 1.46911 * 109.47003 * 295.57251 * 3 2 1 6 6 C 1.39204 * 110.99886 * 295.00148 * 5 3 2 7 7 C 1.36176 * 126.21960 * 332.34864 * 6 5 3 8 8 N 1.48037 * 126.09496 * 359.97438 * 7 6 5 9 9 O 1.21800 * 119.99518 * 90.00377 * 8 7 6 10 10 O 1.21801 * 120.00058 * 270.00439 * 8 7 6 11 11 C 1.39777 * 107.80969 * 179.84649 * 7 6 5 12 12 C 1.50703 * 125.83519 * 180.16165 * 11 7 6 13 13 N 1.30838 * 108.32248 * 0.41945 * 11 7 6 14 14 N 1.35247 * 126.22065 * 152.65735 * 6 5 3 15 15 C 1.46496 * 126.04108 * 0.02562 * 14 6 5 16 16 C 1.50700 * 109.47353 * 55.57196 * 3 2 1 17 17 O 1.21281 * 120.00027 * 248.03437 * 16 3 2 18 18 N 1.34780 * 120.00072 * 68.03041 * 16 3 2 19 19 C 1.46494 * 119.99605 * 5.02404 * 18 16 3 20 20 C 1.46490 * 120.00029 * 185.02385 * 18 16 3 21 21 C 1.50697 * 109.47291 * 89.99940 * 20 18 16 22 22 H 1.08001 * 120.00426 * 359.97438 * 21 20 18 23 23 C 1.37883 * 120.00330 * 179.97438 * 21 20 18 24 24 N 1.31513 * 119.99983 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00123 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47191 * 60.00255 * 25 23 21 27 27 H 1.48498 * 109.46937 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47243 * 300.00156 * 25 23 21 29 29 H 1.09003 * 109.46866 * 177.49670 * 1 2 3 30 30 H 1.08995 * 109.46928 * 297.49084 * 1 2 3 31 31 H 1.08994 * 109.47067 * 57.49769 * 1 2 3 32 32 H 1.09002 * 109.47277 * 120.00131 * 2 1 3 33 33 H 1.09000 * 109.47535 * 239.99919 * 2 1 3 34 34 H 1.00897 * 110.99459 * 58.95632 * 5 3 2 35 35 H 1.08998 * 109.47123 * 270.32314 * 12 11 7 36 36 H 1.08996 * 109.47190 * 30.32444 * 12 11 7 37 37 H 1.09002 * 109.46626 * 150.32458 * 12 11 7 38 38 H 1.09000 * 109.46808 * 94.88089 * 15 14 6 39 39 H 1.09003 * 109.47256 * 214.88001 * 15 14 6 40 40 H 1.09004 * 109.47428 * 334.88119 * 15 14 6 41 41 H 1.08996 * 109.47415 * 88.86021 * 19 18 16 42 42 H 1.09004 * 109.47312 * 208.85768 * 19 18 16 43 43 H 1.09002 * 109.47555 * 328.85572 * 19 18 16 44 44 H 1.09000 * 109.47183 * 209.99766 * 20 18 16 45 45 H 1.09006 * 109.47561 * 330.00004 * 20 18 16 46 46 H 0.96997 * 120.00281 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1271 1.4435 0.0793 5 7 1.6395 2.1034 -1.2494 6 6 2.2581 1.5118 -2.3472 7 6 3.4569 0.8659 -2.3439 8 7 4.3374 0.6673 -1.1705 9 8 4.2092 -0.3235 -0.4738 10 8 5.1899 1.4947 -0.9018 11 6 3.7065 0.4213 -3.6454 12 6 4.9221 -0.3462 -4.0976 13 7 2.7070 0.7901 -4.4049 14 7 1.7804 1.4791 -3.6121 15 6 0.5174 2.0617 -4.0718 16 6 1.4501 2.1839 1.1719 17 8 0.6485 3.0746 0.9848 18 7 1.8133 1.8571 2.4281 19 6 2.8615 0.8583 2.6510 20 6 1.1599 2.5007 3.5703 21 6 -0.0461 1.6947 3.9788 22 1 -0.3008 0.7933 3.4411 23 6 -0.8247 2.1079 5.0392 24 7 -0.5151 3.2057 5.6938 25 14 -2.3192 1.1083 5.5459 26 1 -1.8922 -0.2620 5.9270 27 1 -2.9816 1.7608 6.7038 28 1 -3.2721 1.0319 4.4096 29 1 -0.3633 -1.0267 -0.0449 30 1 -0.3633 0.4744 0.9116 31 1 -0.3633 0.5522 -0.8667 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 0.6361 2.1002 -1.3545 35 1 5.6973 0.3530 -4.4112 36 1 5.2941 -0.9557 -3.2742 37 1 4.6540 -0.9908 -4.9347 38 1 0.7015 3.0590 -4.4713 39 1 0.0889 1.4315 -4.8512 40 1 -0.1780 2.1281 -3.2350 41 1 3.8336 1.3507 2.6739 42 1 2.6870 0.3544 3.6017 43 1 2.8438 0.1265 1.8433 44 1 1.8590 2.5567 4.4047 45 1 0.8467 3.5066 3.2905 46 1 -1.0629 3.4966 6.4394 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345812273.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:53 Heat of formation + Delta-G solvation = 46.413008 kcal Electronic energy + Delta-G solvation = -31899.273316 eV Core-core repulsion = 27636.668900 eV Total energy + Delta-G solvation = -4262.604415 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.93796 -42.49656 -41.33984 -38.31439 -37.57423 -36.75787 -35.54251 -34.77881 -33.66624 -31.24694 -30.74059 -30.23697 -28.66582 -27.55730 -27.17521 -25.78098 -25.07651 -23.36349 -22.24247 -22.04648 -20.36442 -19.86536 -19.71274 -18.75268 -18.68662 -18.32870 -17.65965 -17.43308 -17.00293 -16.75827 -16.58296 -16.06742 -15.81814 -15.22720 -14.90315 -14.68421 -14.51738 -14.30724 -14.14286 -13.98867 -13.77965 -13.68433 -13.54081 -13.40920 -13.19063 -13.02223 -12.90677 -12.86945 -12.68425 -12.56281 -12.51233 -12.24663 -12.19491 -12.07902 -12.04272 -11.80035 -11.70017 -10.76984 -10.63870 -10.45282 -9.79707 -9.52475 -8.22282 -6.37201 -0.61070 0.07987 0.16039 0.82587 0.98349 1.38174 1.41632 1.48497 1.54459 1.87625 2.35519 2.44030 2.98669 3.07390 3.10041 3.17837 3.37493 3.47575 3.63605 3.90685 4.02053 4.09454 4.20944 4.24543 4.35161 4.43809 4.49579 4.54583 4.58914 4.61170 4.63034 4.76186 4.79029 4.93973 4.97175 5.01454 5.12276 5.14474 5.20413 5.27682 5.51280 5.59093 5.77041 6.03001 6.05614 6.48458 6.55088 6.71199 7.14436 7.34986 8.85307 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018071 B = 0.003507 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.089659 B = 7982.079627 C = 8627.028984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.147 4.147 3 C 0.071 3.929 4 H 0.102 0.898 5 N -0.583 5.583 6 C 0.359 3.641 7 C -0.254 4.254 8 N 0.067 4.933 9 O -0.122 6.122 10 O -0.185 6.185 11 C 0.146 3.854 12 C -0.085 4.085 13 N -0.276 5.276 14 N -0.365 5.365 15 C 0.085 3.915 16 C 0.517 3.483 17 O -0.574 6.574 18 N -0.597 5.597 19 C 0.061 3.939 20 C 0.261 3.739 21 C -0.540 4.540 22 H 0.061 0.939 23 C 0.009 3.991 24 N -0.929 5.929 25 Si 0.967 3.033 26 H -0.260 1.260 27 H -0.282 1.282 28 H -0.274 1.274 29 H 0.090 0.910 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.385 0.615 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.100 0.900 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.025 0.975 45 H 0.001 0.999 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.455 -10.506 -21.326 24.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.186 4.186 3 C -0.040 4.040 4 H 0.119 0.881 5 N -0.216 5.216 6 C 0.126 3.874 7 C -0.352 4.352 8 N 0.592 4.408 9 O -0.350 6.350 10 O -0.396 6.396 11 C -0.023 4.023 12 C -0.144 4.144 13 N -0.097 5.097 14 N -0.150 5.150 15 C -0.053 4.053 16 C 0.303 3.697 17 O -0.454 6.454 18 N -0.327 5.327 19 C -0.081 4.081 20 C 0.140 3.860 21 C -0.579 4.579 22 H 0.079 0.921 23 C -0.190 4.190 24 N -0.568 5.568 25 Si 0.792 3.208 26 H -0.184 1.184 27 H -0.207 1.207 28 H -0.200 1.200 29 H 0.109 0.891 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.217 0.783 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.129 0.871 38 H 0.118 0.882 39 H 0.143 0.857 40 H 0.120 0.880 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.043 0.957 45 H 0.019 0.981 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.305 -9.136 -22.982 25.294 hybrid contribution -0.693 -0.205 1.898 2.031 sum 4.612 -9.341 -21.084 23.517 Atomic orbital electron populations 1.21828 0.94263 1.03769 1.01379 1.22393 0.97553 0.92377 1.06234 1.21949 1.01430 0.94447 0.86218 0.88068 1.56910 1.16235 1.49354 0.99054 1.18598 0.91951 0.90364 0.86468 1.20077 0.98800 1.27039 0.89242 1.42625 0.99265 0.99004 0.99951 1.94499 1.74392 1.18956 1.47169 1.94606 1.28956 1.39915 1.76106 1.22394 0.97315 0.96046 0.86550 1.20570 0.90460 0.99490 1.03834 1.77592 1.00490 1.15732 1.15932 1.48626 1.19352 1.44255 1.02777 1.22506 0.78536 1.00785 1.03471 1.20112 0.81958 0.83327 0.84289 1.90648 1.36635 1.32743 1.85343 1.47997 1.37919 1.41190 1.05629 1.22275 0.89609 0.91760 1.04478 1.18845 0.92150 0.92525 0.82491 1.21626 1.11278 1.09929 1.15034 0.92095 1.25860 1.00878 0.96179 0.96122 1.70054 1.40791 1.24139 1.21857 0.85468 0.78675 0.79083 0.77609 1.18428 1.20735 1.19967 0.89147 0.94212 0.92654 0.87508 0.88783 0.78333 0.87983 0.89919 0.87115 0.88173 0.85740 0.88002 0.91661 0.89927 0.88747 0.95717 0.98084 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 9.36 71.98 0.67 -3.39 16 2 C -0.15 -3.83 3.78 30.59 0.12 -3.71 16 3 C 0.07 2.25 1.45 44.17 0.06 2.31 16 4 H 0.10 3.29 3.82 -2.39 -0.01 3.28 16 5 N -0.58 -16.63 5.96 -327.37 -1.95 -18.58 16 6 C 0.36 8.90 6.38 131.43 0.84 9.74 16 7 C -0.25 -6.46 5.46 36.26 0.20 -6.26 16 8 N 0.07 1.85 2.38 -46.70 -0.11 1.74 16 9 O -0.12 -3.21 15.87 18.89 0.30 -2.91 16 10 O -0.19 -5.81 18.76 18.88 0.35 -5.46 16 11 C 0.15 3.07 7.21 43.08 0.31 3.38 16 12 C -0.09 -1.15 10.44 71.24 0.74 -0.41 16 13 N -0.28 -5.74 12.56 -47.44 -0.60 -6.34 16 14 N -0.37 -7.24 4.02 -366.65 -1.47 -8.71 16 15 C 0.09 0.96 11.41 127.77 1.46 2.42 16 16 C 0.52 21.63 5.59 87.66 0.49 22.12 16 17 O -0.57 -28.56 15.81 -3.03 -0.05 -28.61 16 18 N -0.60 -25.74 2.86 -851.16 -2.43 -28.17 16 19 C 0.06 1.99 9.95 127.77 1.27 3.27 16 20 C 0.26 13.98 5.19 85.63 0.44 14.43 16 21 C -0.54 -30.09 9.39 25.60 0.24 -29.85 16 22 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 23 C 0.01 0.49 5.46 84.66 0.46 0.96 16 24 N -0.93 -55.52 13.29 21.45 0.28 -55.23 16 25 Si 0.97 43.53 29.54 68.60 2.03 45.55 16 26 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 27 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 28 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.04 1.37 7.19 -2.39 -0.02 1.35 16 31 H 0.05 1.26 6.62 -2.39 -0.02 1.24 16 32 H 0.11 2.74 5.38 -2.39 -0.01 2.73 16 33 H 0.09 2.19 5.79 -2.39 -0.01 2.18 16 34 H 0.39 10.04 5.47 -89.70 -0.49 9.55 16 35 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.10 0.93 8.14 -2.39 -0.02 0.92 16 39 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.10 0.96 6.97 -2.39 -0.02 0.94 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.08 2.68 8.06 -2.39 -0.02 2.66 16 43 H 0.09 2.63 4.06 -2.39 -0.01 2.62 16 44 H 0.02 1.36 8.07 -2.39 -0.02 1.34 16 45 H 0.00 0.06 7.36 -2.38 -0.02 0.05 16 46 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -75.02 375.37 4.21 -70.80 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.55 Total: 20.89 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 7.31 Total: 15.01 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -6.28 Total: -115.29 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: 0.61 Total: -36.97 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -75.02 4.21 -70.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345812273.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.216 kcal (2) G-P(sol) polarization free energy of solvation -75.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds