Wall clock time and date at job start Tue Mar 31 2020 22:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00223 * 2 1 4 4 N 1.46507 * 109.46739 * 125.00337 * 3 2 1 5 5 C 1.46499 * 119.99776 * 269.99792 * 4 3 2 6 6 C 1.50693 * 109.47440 * 269.99864 * 5 4 3 7 7 H 1.08009 * 120.00105 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00063 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99960 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 119.99919 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46975 * 60.00337 * 10 8 6 12 12 H 1.48505 * 109.46796 * 179.97438 * 10 8 6 13 13 H 1.48491 * 109.47095 * 300.00127 * 10 8 6 14 14 C 1.34780 * 120.00040 * 90.00456 * 4 3 2 15 15 O 1.21277 * 119.99861 * 180.02562 * 14 4 3 16 16 C 1.50698 * 119.99775 * 359.97438 * 14 4 3 17 17 C 1.50696 * 109.46940 * 180.02562 * 16 14 4 18 18 C 1.34673 * 126.59236 * 85.16961 * 17 16 14 19 19 N 1.34130 * 108.01708 * 180.28149 * 18 17 16 20 20 C 1.30495 * 109.26164 * 359.73123 * 19 18 17 21 21 N 1.35046 * 108.69593 * 359.97438 * 20 19 18 22 22 C 1.46504 * 126.39465 * 180.02562 * 21 20 19 23 23 C 1.50706 * 109.46592 * 265.02110 * 22 21 20 24 24 C 1.38237 * 119.99761 * 90.00618 * 23 22 21 25 25 C 1.38235 * 119.99712 * 179.97438 * 24 23 22 26 26 C 1.38234 * 120.00220 * 359.94731 * 25 24 23 27 27 C 1.38233 * 120.00037 * 0.28719 * 26 25 24 28 28 C 1.38234 * 120.00191 * 269.97720 * 23 22 21 29 29 H 1.08002 * 119.99815 * 359.97438 * 1 2 3 30 30 H 1.07992 * 120.00243 * 179.97438 * 1 2 3 31 31 H 1.08008 * 119.99665 * 180.02562 * 2 1 3 32 32 H 1.09005 * 109.47314 * 5.00798 * 3 2 1 33 33 H 1.09000 * 109.47620 * 245.00356 * 3 2 1 34 34 H 1.08995 * 109.47289 * 30.00702 * 5 4 3 35 35 H 1.09004 * 109.46403 * 150.00473 * 5 4 3 36 36 H 0.97004 * 119.99735 * 180.02562 * 9 8 6 37 37 H 1.09000 * 109.47251 * 60.00244 * 16 14 4 38 38 H 1.09002 * 109.47596 * 300.00160 * 16 14 4 39 39 H 1.07998 * 125.98975 * 0.04201 * 18 17 16 40 40 H 1.07997 * 125.65670 * 180.02562 * 20 19 18 41 41 H 1.09003 * 109.47235 * 145.02449 * 22 21 20 42 42 H 1.09000 * 109.47140 * 25.01912 * 22 21 20 43 43 H 1.08005 * 120.00088 * 359.96779 * 24 23 22 44 44 H 1.07999 * 119.99770 * 179.97438 * 25 24 23 45 45 H 1.08002 * 119.99744 * 180.02562 * 26 25 24 46 46 H 1.07998 * 120.00395 * 179.72811 * 27 26 25 47 47 H 1.07999 * 119.99990 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9939 1.3317 1.1315 5 6 2.5590 1.8647 2.4249 6 6 2.8445 3.3433 2.4806 7 1 3.3036 3.8368 1.6367 8 6 2.5197 4.0661 3.6089 9 7 1.9611 3.4651 4.6366 10 14 2.8730 5.8992 3.6776 11 1 2.1362 6.5865 2.5867 12 1 2.4322 6.4394 4.9888 13 1 4.3306 6.1289 3.5117 14 6 4.2498 0.8659 0.9823 15 8 5.0198 0.8876 1.9191 16 6 4.6969 0.3172 -0.3481 17 6 6.1312 -0.1345 -0.2487 18 6 6.5673 -1.3322 0.1859 19 7 7.9072 -1.3329 0.1248 20 6 8.3177 -0.1833 -0.3366 21 7 7.2408 0.5923 -0.5865 22 6 7.2575 1.9589 -1.1142 23 6 7.2003 2.9394 0.0289 24 6 8.3700 3.3955 0.6074 25 6 8.3175 4.2953 1.6555 26 6 7.0955 4.7397 2.1245 27 6 5.9257 4.2798 1.5492 28 6 5.9782 3.3830 0.4985 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9352 -0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6213 1.4026 -0.9314 34 1 1.4890 1.6964 2.5460 35 1 3.0992 1.3599 3.2259 36 1 1.7322 3.9738 5.4303 37 1 4.6120 1.0937 -1.1084 38 1 4.0678 -0.5297 -0.6219 39 1 5.9472 -2.1476 0.5278 40 1 9.3478 0.1005 -0.4936 41 1 6.3952 2.1080 -1.7642 42 1 8.1734 2.1175 -1.6834 43 1 9.3248 3.0489 0.2405 44 1 9.2314 4.6514 2.1077 45 1 7.0546 5.4430 2.9431 46 1 4.9708 4.6237 1.9185 47 1 5.0643 3.0267 0.0466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359432543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:44 Heat of formation + Delta-G solvation = 82.083022 kcal Electronic energy + Delta-G solvation = -30566.583546 eV Core-core repulsion = 26716.375161 eV Total energy + Delta-G solvation = -3850.208384 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.95808 -39.07636 -38.79426 -35.66821 -34.45433 -33.30624 -32.19104 -31.86668 -30.68117 -30.54973 -28.05963 -26.49060 -26.20646 -25.36245 -22.90863 -22.38808 -21.47608 -21.05407 -20.16780 -19.69535 -18.34784 -17.12705 -16.73387 -16.55422 -16.24196 -15.55685 -15.46208 -15.00666 -14.82628 -14.59216 -14.25750 -14.24456 -13.77244 -13.38689 -13.21465 -12.99096 -12.96561 -12.78113 -12.52702 -12.43254 -12.22228 -12.16328 -11.73203 -11.68164 -11.29954 -11.05611 -11.04612 -10.98586 -10.75427 -10.56900 -10.14277 -9.75193 -9.66718 -9.38484 -9.22394 -8.95331 -8.55606 -8.53009 -8.48431 -8.04689 -7.70433 -6.09656 -4.13671 1.47891 1.76876 2.24596 2.41933 3.03462 3.21468 3.26419 3.28704 3.40496 3.43016 4.01258 4.17401 4.36391 4.55077 4.74610 4.79156 4.89259 5.04280 5.05518 5.17573 5.22106 5.24499 5.29399 5.31725 5.37579 5.49926 5.54889 5.61455 5.68857 5.78002 5.92913 5.96839 6.04036 6.13649 6.25064 6.36409 6.54784 6.70034 6.75996 6.85744 6.87461 6.95807 6.98004 7.08166 7.32178 7.39851 7.43740 7.52345 7.86702 8.19282 8.30619 8.37915 8.84606 9.08095 9.49639 10.98718 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008737 B = 0.005942 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3204.010209 B = 4711.297958 C = 7089.565828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.169 4.169 3 C 0.135 3.865 4 N -0.596 5.596 5 C 0.250 3.750 6 C -0.522 4.522 7 H 0.060 0.940 8 C 0.064 3.936 9 N -0.891 5.891 10 Si 0.881 3.119 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.271 1.271 14 C 0.505 3.495 15 O -0.515 6.515 16 C -0.071 4.071 17 C 0.010 3.990 18 C -0.017 4.017 19 N -0.495 5.495 20 C 0.178 3.822 21 N -0.444 5.444 22 C 0.149 3.851 23 C -0.124 4.124 24 C -0.108 4.108 25 C -0.127 4.127 26 C -0.112 4.112 27 C -0.095 4.095 28 C -0.073 4.073 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.030 0.970 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.163 0.837 40 H 0.199 0.801 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.117 0.883 46 H 0.140 0.860 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.996 -1.694 -14.696 15.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.188 4.188 3 C 0.011 3.989 4 N -0.329 5.329 5 C 0.131 3.869 6 C -0.561 4.561 7 H 0.078 0.922 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.709 3.291 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.197 1.197 14 C 0.290 3.710 15 O -0.389 6.389 16 C -0.113 4.113 17 C -0.105 4.105 18 C -0.165 4.165 19 N -0.213 5.213 20 C -0.103 4.103 21 N -0.127 5.127 22 C 0.027 3.973 23 C -0.125 4.125 24 C -0.127 4.127 25 C -0.145 4.145 26 C -0.130 4.130 27 C -0.113 4.113 28 C -0.091 4.091 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.123 0.877 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.125 0.875 39 H 0.180 0.820 40 H 0.215 0.785 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.157 0.843 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.863 -2.163 -13.810 15.573 hybrid contribution -0.542 1.724 0.123 1.811 sum 6.321 -0.439 -13.687 15.082 Atomic orbital electron populations 1.23816 0.95876 1.01750 1.00512 1.23428 0.96408 0.99047 0.99954 1.20583 0.93194 0.95431 0.89655 1.48226 1.10278 1.60821 1.13529 1.19230 0.95273 0.93677 0.78738 1.21379 1.40502 0.93228 1.00983 0.92180 1.24883 0.95287 0.98108 0.95519 1.69907 1.41845 1.36057 1.05153 0.86856 0.79003 0.85739 0.77525 1.20149 1.21159 1.19702 1.20064 0.82472 0.79154 0.89314 1.90747 1.52155 1.54727 1.41317 1.20231 0.90729 1.02291 0.98015 1.20457 0.88524 0.93479 1.07991 1.21862 0.91170 0.97323 1.06105 1.70210 1.11552 1.20776 1.18726 1.24703 0.93372 0.88029 1.04237 1.45359 1.06708 1.12325 1.48338 1.20673 1.04507 0.77990 0.94114 1.19765 0.94271 0.99257 0.99215 1.20784 0.96862 0.98047 0.97010 1.21011 0.97637 0.98525 0.97300 1.21239 0.92700 0.99771 0.99286 1.21603 0.99486 0.95782 0.94430 1.20889 0.96113 0.95777 0.96340 0.88333 0.88798 0.87736 0.89444 0.91118 0.95155 0.94002 0.92666 0.89388 0.87549 0.81965 0.78477 0.88896 0.88207 0.86750 0.86503 0.86472 0.84263 0.86843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 14.32 29.01 0.42 -1.79 16 2 C -0.17 -2.21 9.74 -36.03 -0.35 -2.56 16 3 C 0.14 1.98 5.65 -5.19 -0.03 1.95 16 4 N -0.60 -11.44 2.44 -176.43 -0.43 -11.87 16 5 C 0.25 6.12 5.16 -5.20 -0.03 6.09 16 6 C -0.52 -13.39 8.75 -34.44 -0.30 -13.69 16 7 H 0.06 1.48 6.05 -52.48 -0.32 1.16 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -25.52 13.29 55.43 0.74 -24.79 16 10 Si 0.88 20.37 28.37 -169.99 -4.82 15.55 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.27 -6.07 6.86 56.52 0.39 -5.68 16 14 C 0.50 9.64 5.49 -10.98 -0.06 9.57 16 15 O -0.51 -12.40 14.96 5.56 0.08 -12.32 16 16 C -0.07 -1.01 4.35 -29.04 -0.13 -1.14 16 17 C 0.01 0.16 5.45 -81.60 -0.44 -0.28 16 18 C -0.02 -0.28 11.79 -17.81 -0.21 -0.49 16 19 N -0.49 -8.42 11.25 -14.67 -0.16 -8.58 16 20 C 0.18 2.52 12.56 -90.38 -1.13 1.39 16 21 N -0.44 -6.21 2.73 -115.27 -0.32 -6.53 16 22 C 0.15 1.70 6.04 -5.19 -0.03 1.67 16 23 C -0.12 -1.82 5.46 -104.62 -0.57 -2.39 16 24 C -0.11 -1.51 9.70 -39.58 -0.38 -1.89 16 25 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 26 C -0.11 -1.94 10.05 -39.58 -0.40 -2.34 16 27 C -0.10 -1.85 9.84 -39.58 -0.39 -2.24 16 28 C -0.07 -1.26 8.18 -39.58 -0.32 -1.59 16 29 H 0.10 1.18 7.84 -52.49 -0.41 0.77 16 30 H 0.09 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.10 1.29 7.83 -52.48 -0.41 0.88 16 32 H 0.09 1.34 7.72 -51.93 -0.40 0.94 16 33 H 0.07 0.83 6.44 -51.93 -0.33 0.49 16 34 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 35 H 0.04 1.20 7.42 -51.93 -0.39 0.82 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.09 1.05 6.17 -51.93 -0.32 0.73 16 38 H 0.11 1.26 7.77 -51.93 -0.40 0.85 16 39 H 0.16 2.48 8.06 -52.49 -0.42 2.06 16 40 H 0.20 2.00 8.06 -52.49 -0.42 1.58 16 41 H 0.09 0.92 7.25 -51.93 -0.38 0.54 16 42 H 0.10 0.81 8.08 -51.93 -0.42 0.39 16 43 H 0.11 1.24 8.06 -52.48 -0.42 0.82 16 44 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 45 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 46 H 0.14 3.01 4.20 -52.49 -0.22 2.79 16 47 H 0.11 1.98 6.12 -52.49 -0.32 1.66 16 LS Contribution 389.75 15.07 5.87 5.87 Total: -1.00 -33.72 389.75 -10.33 -44.05 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -6.43 Total: 8.98 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -4.86 Total: -10.37 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.17 Total: -51.77 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.08 Total: -12.32 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.82 Total: 15.55 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.72 -10.33 -44.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359432543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.130 kcal (2) G-P(sol) polarization free energy of solvation -33.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds