Wall clock time and date at job start Tue Mar 31 2020 22:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00223 * 2 1 4 4 N 1.46507 * 109.46739 * 125.00337 * 3 2 1 5 5 C 1.46499 * 119.99776 * 269.99792 * 4 3 2 6 6 C 1.50693 * 109.47440 * 269.99864 * 5 4 3 7 7 H 1.08009 * 120.00105 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00063 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99960 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 119.99919 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46975 * 60.00337 * 10 8 6 12 12 H 1.48505 * 109.46796 * 179.97438 * 10 8 6 13 13 H 1.48491 * 109.47095 * 300.00127 * 10 8 6 14 14 C 1.34780 * 120.00040 * 90.00456 * 4 3 2 15 15 O 1.21277 * 119.99861 * 180.02562 * 14 4 3 16 16 C 1.50698 * 119.99775 * 359.97438 * 14 4 3 17 17 C 1.50696 * 109.46940 * 180.02562 * 16 14 4 18 18 C 1.34673 * 126.59236 * 85.16961 * 17 16 14 19 19 N 1.34130 * 108.01708 * 180.28149 * 18 17 16 20 20 C 1.30495 * 109.26164 * 359.73123 * 19 18 17 21 21 N 1.35046 * 108.69593 * 359.97438 * 20 19 18 22 22 C 1.46504 * 126.39465 * 180.02562 * 21 20 19 23 23 C 1.50706 * 109.46592 * 265.02110 * 22 21 20 24 24 C 1.38237 * 119.99761 * 90.00618 * 23 22 21 25 25 C 1.38235 * 119.99712 * 179.97438 * 24 23 22 26 26 C 1.38234 * 120.00220 * 359.94731 * 25 24 23 27 27 C 1.38233 * 120.00037 * 0.28719 * 26 25 24 28 28 C 1.38234 * 120.00191 * 269.97720 * 23 22 21 29 29 H 1.08002 * 119.99815 * 359.97438 * 1 2 3 30 30 H 1.07992 * 120.00243 * 179.97438 * 1 2 3 31 31 H 1.08008 * 119.99665 * 180.02562 * 2 1 3 32 32 H 1.09005 * 109.47314 * 5.00798 * 3 2 1 33 33 H 1.09000 * 109.47620 * 245.00356 * 3 2 1 34 34 H 1.08995 * 109.47289 * 30.00702 * 5 4 3 35 35 H 1.09004 * 109.46403 * 150.00473 * 5 4 3 36 36 H 0.97004 * 119.99735 * 180.02562 * 9 8 6 37 37 H 1.09000 * 109.47251 * 60.00244 * 16 14 4 38 38 H 1.09002 * 109.47596 * 300.00160 * 16 14 4 39 39 H 1.07998 * 125.98975 * 0.04201 * 18 17 16 40 40 H 1.07997 * 125.65670 * 180.02562 * 20 19 18 41 41 H 1.09003 * 109.47235 * 145.02449 * 22 21 20 42 42 H 1.09000 * 109.47140 * 25.01912 * 22 21 20 43 43 H 1.08005 * 120.00088 * 359.96779 * 24 23 22 44 44 H 1.07999 * 119.99770 * 179.97438 * 25 24 23 45 45 H 1.08002 * 119.99744 * 180.02562 * 26 25 24 46 46 H 1.07998 * 120.00395 * 179.72811 * 27 26 25 47 47 H 1.07999 * 119.99990 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9939 1.3317 1.1315 5 6 2.5590 1.8647 2.4249 6 6 2.8445 3.3433 2.4806 7 1 3.3036 3.8368 1.6367 8 6 2.5197 4.0661 3.6089 9 7 1.9611 3.4651 4.6366 10 14 2.8730 5.8992 3.6776 11 1 2.1362 6.5865 2.5867 12 1 2.4322 6.4394 4.9888 13 1 4.3306 6.1289 3.5117 14 6 4.2498 0.8659 0.9823 15 8 5.0198 0.8876 1.9191 16 6 4.6969 0.3172 -0.3481 17 6 6.1312 -0.1345 -0.2487 18 6 6.5673 -1.3322 0.1859 19 7 7.9072 -1.3329 0.1248 20 6 8.3177 -0.1833 -0.3366 21 7 7.2408 0.5923 -0.5865 22 6 7.2575 1.9589 -1.1142 23 6 7.2003 2.9394 0.0289 24 6 8.3700 3.3955 0.6074 25 6 8.3175 4.2953 1.6555 26 6 7.0955 4.7397 2.1245 27 6 5.9257 4.2798 1.5492 28 6 5.9782 3.3830 0.4985 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9352 -0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6213 1.4026 -0.9314 34 1 1.4890 1.6964 2.5460 35 1 3.0992 1.3599 3.2259 36 1 1.7322 3.9738 5.4303 37 1 4.6120 1.0937 -1.1084 38 1 4.0678 -0.5297 -0.6219 39 1 5.9472 -2.1476 0.5278 40 1 9.3478 0.1005 -0.4936 41 1 6.3952 2.1080 -1.7642 42 1 8.1734 2.1175 -1.6834 43 1 9.3248 3.0489 0.2405 44 1 9.2314 4.6514 2.1077 45 1 7.0546 5.4430 2.9431 46 1 4.9708 4.6237 1.9185 47 1 5.0643 3.0267 0.0466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359432543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:44 Heat of formation + Delta-G solvation = 63.902855 kcal Electronic energy + Delta-G solvation = -30567.371897 eV Core-core repulsion = 26716.375161 eV Total energy + Delta-G solvation = -3850.996736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.05769 -40.55653 -40.01355 -37.12450 -35.54625 -35.10177 -33.60554 -33.20892 -31.84875 -31.77232 -29.76169 -27.81490 -27.23715 -26.78456 -24.71711 -23.60384 -22.67774 -22.18323 -21.38214 -20.79735 -19.73634 -18.64726 -18.12126 -17.97620 -17.60768 -17.08359 -16.67407 -16.26708 -16.18849 -16.00951 -15.60755 -15.41379 -15.04231 -14.58033 -14.44595 -14.30843 -14.26707 -14.08500 -14.02883 -13.86251 -13.46133 -13.23207 -13.10043 -13.01106 -12.93294 -12.77363 -12.55953 -12.29713 -12.15645 -12.14115 -11.80133 -11.55768 -10.89757 -10.62747 -10.60135 -10.41879 -10.27939 -9.76642 -9.75618 -9.37247 -9.21048 -8.17959 -6.28685 0.28569 0.54600 1.10556 1.33280 1.35499 1.37815 1.41593 1.93445 2.02839 2.24845 2.35310 2.64009 2.94810 3.13464 3.63651 3.72028 3.73682 3.87077 3.96345 4.01483 4.12561 4.15122 4.16499 4.24078 4.30087 4.36198 4.49340 4.53901 4.59056 4.60001 4.72656 4.87967 4.90625 5.06464 5.08385 5.09528 5.13902 5.30660 5.41060 5.52280 5.56519 5.65243 5.70512 5.75238 5.80968 5.83690 6.00862 6.10354 6.14216 6.39270 6.77559 6.86177 7.19588 7.35311 7.59370 8.89668 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008737 B = 0.005942 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3204.010209 B = 4711.297958 C = 7089.565828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.183 4.183 3 C 0.132 3.868 4 N -0.598 5.598 5 C 0.268 3.732 6 C -0.515 4.515 7 H 0.068 0.932 8 C 0.012 3.988 9 N -0.932 5.932 10 Si 0.939 3.061 11 H -0.261 1.261 12 H -0.289 1.289 13 H -0.265 1.265 14 C 0.505 3.495 15 O -0.572 6.572 16 C -0.058 4.058 17 C 0.001 3.999 18 C -0.042 4.042 19 N -0.534 5.534 20 C 0.187 3.813 21 N -0.444 5.444 22 C 0.146 3.854 23 C -0.122 4.122 24 C -0.103 4.103 25 C -0.127 4.127 26 C -0.134 4.134 27 C -0.133 4.133 28 C -0.085 4.085 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.014 0.986 35 H -0.011 1.011 36 H 0.262 0.738 37 H 0.119 0.881 38 H 0.135 0.865 39 H 0.161 0.839 40 H 0.240 0.760 41 H 0.111 0.889 42 H 0.146 0.854 43 H 0.158 0.842 44 H 0.146 0.854 45 H 0.114 0.886 46 H 0.105 0.895 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.031 -1.455 -18.205 19.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.202 4.202 3 C 0.010 3.990 4 N -0.330 5.330 5 C 0.147 3.853 6 C -0.554 4.554 7 H 0.086 0.914 8 C -0.187 4.187 9 N -0.573 5.573 10 Si 0.764 3.236 11 H -0.185 1.185 12 H -0.215 1.215 13 H -0.190 1.190 14 C 0.293 3.707 15 O -0.451 6.451 16 C -0.098 4.098 17 C -0.115 4.115 18 C -0.190 4.190 19 N -0.252 5.252 20 C -0.095 4.095 21 N -0.126 5.126 22 C 0.026 3.974 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.145 4.145 26 C -0.153 4.153 27 C -0.151 4.151 28 C -0.104 4.104 29 H 0.115 0.885 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.095 0.905 33 H 0.126 0.874 34 H 0.032 0.968 35 H 0.007 0.993 36 H 0.071 0.929 37 H 0.137 0.863 38 H 0.152 0.848 39 H 0.178 0.822 40 H 0.256 0.744 41 H 0.129 0.871 42 H 0.164 0.836 43 H 0.175 0.825 44 H 0.164 0.836 45 H 0.132 0.868 46 H 0.123 0.877 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.867 -1.920 -17.386 19.611 hybrid contribution -1.150 1.597 1.211 2.310 sum 7.717 -0.323 -16.175 17.925 Atomic orbital electron populations 1.24024 0.95738 1.02670 0.98718 1.23377 0.96734 0.98556 1.01505 1.20838 0.92839 0.96143 0.89211 1.48147 1.11532 1.60433 1.12846 1.18610 0.93320 0.92962 0.80397 1.21656 1.39033 0.93762 1.00945 0.91436 1.25677 0.95280 1.02425 0.95285 1.70055 1.43700 1.37705 1.05846 0.85916 0.79255 0.80824 0.77590 1.18543 1.21467 1.19021 1.20871 0.81439 0.77835 0.90581 1.90719 1.53657 1.56978 1.43768 1.20193 0.90615 1.03917 0.95108 1.20542 0.89407 0.93425 1.08115 1.22053 0.91645 0.98291 1.06969 1.70177 1.11721 1.22837 1.20491 1.25524 0.94903 0.87095 1.01966 1.45494 1.06080 1.12999 1.47989 1.21018 1.07935 0.75514 0.92982 1.20119 0.93281 0.99153 0.99775 1.21320 0.98417 0.96577 0.95797 1.21380 0.97484 0.98220 0.97436 1.21361 0.93468 1.00617 0.99812 1.21480 0.98802 0.98229 0.96610 1.20898 0.97342 0.95900 0.96259 0.88477 0.86885 0.86641 0.90536 0.87358 0.96780 0.99284 0.92929 0.86327 0.84764 0.82180 0.74425 0.87069 0.83589 0.82470 0.83594 0.86788 0.87687 0.87607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.96 14.32 67.78 0.97 -2.99 16 2 C -0.18 -4.51 9.74 25.64 0.25 -4.26 16 3 C 0.13 3.72 5.65 85.63 0.48 4.20 16 4 N -0.60 -23.38 2.44 -830.50 -2.03 -25.41 16 5 C 0.27 13.93 5.16 85.63 0.44 14.37 16 6 C -0.52 -27.65 8.75 25.60 0.22 -27.43 16 7 H 0.07 3.47 6.05 -2.91 -0.02 3.45 16 8 C 0.01 0.65 5.46 84.65 0.46 1.11 16 9 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 10 Si 0.94 43.44 28.37 68.60 1.95 45.39 16 11 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 12 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 13 H -0.27 -11.89 6.86 99.48 0.68 -11.21 16 14 C 0.50 19.33 5.49 87.66 0.48 19.81 16 15 O -0.57 -28.55 14.96 -3.02 -0.05 -28.60 16 16 C -0.06 -1.50 4.35 29.10 0.13 -1.38 16 17 C 0.00 0.02 5.45 40.95 0.22 0.24 16 18 C -0.04 -1.38 11.79 83.52 0.98 -0.40 16 19 N -0.53 -17.22 11.25 -200.31 -2.25 -19.48 16 20 C 0.19 4.60 12.56 180.26 2.26 6.87 16 21 N -0.44 -10.74 2.73 -518.60 -1.42 -12.16 16 22 C 0.15 2.61 6.04 85.63 0.52 3.13 16 23 C -0.12 -3.20 5.46 -19.86 -0.11 -3.31 16 24 C -0.10 -2.45 9.70 22.27 0.22 -2.23 16 25 C -0.13 -3.49 10.05 22.27 0.22 -3.27 16 26 C -0.13 -4.69 10.05 22.27 0.22 -4.47 16 27 C -0.13 -5.30 9.84 22.27 0.22 -5.08 16 28 C -0.09 -2.92 8.18 22.27 0.18 -2.73 16 29 H 0.10 2.23 7.84 -2.91 -0.02 2.21 16 30 H 0.11 2.14 8.06 -2.91 -0.02 2.12 16 31 H 0.12 2.61 7.83 -2.91 -0.02 2.59 16 32 H 0.08 2.32 7.72 -2.38 -0.02 2.30 16 33 H 0.11 2.21 6.44 -2.39 -0.02 2.20 16 34 H 0.01 0.77 8.07 -2.39 -0.02 0.75 16 35 H -0.01 -0.68 7.42 -2.38 -0.02 -0.70 16 36 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 37 H 0.12 2.36 6.17 -2.39 -0.01 2.35 16 38 H 0.13 2.76 7.77 -2.39 -0.02 2.74 16 39 H 0.16 4.95 8.06 -2.91 -0.02 4.93 16 40 H 0.24 3.49 8.06 -2.91 -0.02 3.47 16 41 H 0.11 1.62 7.25 -2.39 -0.02 1.60 16 42 H 0.15 1.33 8.08 -2.39 -0.02 1.31 16 43 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 44 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 45 H 0.11 3.85 8.06 -2.91 -0.02 3.83 16 46 H 0.11 4.79 4.20 -2.91 -0.01 4.78 16 47 H 0.11 3.63 6.12 -2.91 -0.02 3.62 16 Total: -1.00 -81.10 389.75 5.82 -75.28 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 0.95 Total: 28.71 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 8.38 Total: -7.81 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -5.41 Total: -112.96 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.05 Total: -28.60 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.95 Total: 45.39 kcal Total: -81.10 5.82 -75.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359432543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.181 kcal (2) G-P(sol) polarization free energy of solvation -81.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds