Wall clock time and date at job start Tue Mar 31 2020 22:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47678 * 2 1 4 4 C 1.53005 * 109.47155 * 239.99526 * 2 1 3 5 5 O 1.45204 * 109.46950 * 119.99983 * 2 1 3 6 6 C 1.34634 * 117.00029 * 59.99925 * 5 2 1 7 7 O 1.21508 * 120.00375 * 359.97438 * 6 5 2 8 8 N 1.34781 * 119.99670 * 180.02562 * 6 5 2 9 9 C 1.46509 * 119.99829 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.46744 * 324.99642 * 9 8 6 11 11 C 1.52994 * 109.46830 * 204.99856 * 9 8 6 12 12 C 1.53005 * 109.47122 * 64.99925 * 11 9 8 13 13 C 1.50709 * 109.46940 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99535 * 0.02562 * 13 12 11 15 15 C 1.37871 * 119.99534 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00709 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99577 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47032 * 60.00204 * 17 15 13 19 19 H 1.48501 * 109.47025 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47073 * 300.00285 * 17 15 13 21 21 C 1.50695 * 109.47116 * 84.99505 * 9 8 6 22 22 O 1.21288 * 120.00057 * 0.02562 * 21 9 8 23 23 N 1.34774 * 119.99820 * 179.97438 * 21 9 8 24 24 C 1.39870 * 120.00131 * 180.02562 * 23 21 9 25 25 N 1.33634 * 125.60398 * 180.02562 * 24 23 21 26 26 C 1.30851 * 109.77835 * 179.97438 * 25 24 23 27 27 N 1.34384 * 108.20223 * 359.97438 * 26 25 24 28 28 H 0.97006 * 126.76451 * 179.73880 * 27 26 25 29 29 N 1.31173 * 125.60188 * 359.95577 * 24 23 21 30 30 H 1.09003 * 109.46753 * 299.99900 * 1 2 3 31 31 H 1.08994 * 109.46559 * 60.00151 * 1 2 3 32 32 H 1.09004 * 109.47163 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47650 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46951 * 300.00139 * 3 2 1 35 35 H 1.09006 * 109.47520 * 59.99500 * 3 2 1 36 36 H 1.09001 * 109.46785 * 300.00375 * 4 2 1 37 37 H 1.09000 * 109.46742 * 59.99844 * 4 2 1 38 38 H 1.09002 * 109.47148 * 180.02562 * 4 2 1 39 39 H 0.96999 * 120.00484 * 359.97438 * 8 6 5 40 40 H 1.08998 * 109.46972 * 184.99549 * 11 9 8 41 41 H 1.09003 * 109.47407 * 304.99812 * 11 9 8 42 42 H 1.08989 * 109.47113 * 299.99691 * 12 11 9 43 43 H 1.08995 * 109.47205 * 59.99976 * 12 11 9 44 44 H 0.96996 * 120.00516 * 180.02562 * 16 15 13 45 45 H 0.97004 * 120.00234 * 0.02562 * 23 21 9 46 46 H 1.08004 * 125.89959 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9508 -2.5095 0.5041 8 7 2.0672 -2.6654 2.4173 9 6 1.6739 -4.0669 2.5833 10 1 0.6651 -4.2095 2.1959 11 6 1.7064 -4.4331 4.0684 12 6 0.6454 -3.6236 4.8167 13 6 0.6770 -3.9849 6.2795 14 1 1.3835 -4.7182 6.6394 15 6 -0.1953 -3.3785 7.1582 16 7 -1.0553 -2.4852 6.7200 17 14 -0.1557 -3.8258 8.9715 18 1 1.1861 -3.5177 9.5280 19 1 -1.1856 -3.0402 9.6977 20 1 -0.4365 -5.2753 9.1300 21 6 2.6321 -4.9504 1.8269 22 8 3.5531 -4.4580 1.2102 23 7 2.4662 -6.2879 1.8365 24 6 3.3558 -7.1080 1.1348 25 7 3.2969 -8.4414 1.0678 26 6 4.2792 -8.8914 0.3297 27 7 4.9984 -7.8400 -0.0985 28 1 5.7885 -7.8673 -0.6607 29 7 4.3843 -6.6946 0.4334 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.6768 1.9564 0.8900 36 1 1.6766 -1.7490 -1.2491 37 1 1.6766 -0.2076 -2.1392 38 1 3.1300 -0.7218 -1.2490 39 1 2.6267 -2.2365 3.0835 40 1 1.5006 -5.4972 4.1848 41 1 2.6913 -4.2067 4.4771 42 1 0.8512 -2.5597 4.7003 43 1 -0.3394 -3.8501 4.4081 44 1 -1.6688 -2.0584 7.3383 45 1 1.7298 -6.6818 2.3300 46 1 4.4777 -9.9287 0.1036 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497162815.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:03 Heat of formation + Delta-G solvation = -25.628304 kcal Electronic energy + Delta-G solvation = -30180.171281 eV Core-core repulsion = 25914.442920 eV Total energy + Delta-G solvation = -4265.728361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.23407 -40.66426 -39.64260 -37.17157 -35.32811 -34.94912 -33.96126 -33.07061 -32.25847 -31.21951 -30.50262 -27.65686 -27.34554 -27.26326 -24.46123 -23.49116 -22.57411 -21.47126 -20.74715 -19.98208 -19.76701 -18.75409 -17.96852 -17.26655 -16.85130 -16.30650 -16.11541 -15.90204 -15.68196 -15.08328 -14.71433 -14.66329 -14.35813 -14.24369 -14.20376 -13.77302 -13.36602 -12.93795 -12.44011 -12.30735 -12.17132 -12.09060 -11.95973 -11.79882 -11.75100 -11.37281 -11.31370 -11.17800 -10.99878 -10.90396 -10.72419 -10.32322 -10.19119 -10.12750 -10.10105 -10.08099 -9.78118 -9.59297 -9.22754 -8.84329 -8.80778 -8.41117 -6.06132 -4.10142 1.50552 2.13584 2.36148 2.46199 2.91218 3.20755 3.26219 3.30535 3.35812 3.37633 4.30680 4.37962 4.40537 4.54829 4.80810 4.85108 4.91790 4.99401 5.23534 5.30183 5.44952 5.47345 5.50509 5.59737 5.71472 5.73935 5.83451 5.96082 6.02185 6.04426 6.06063 6.33365 6.36987 6.41392 6.54800 6.61869 6.75131 6.76224 6.80899 7.12854 7.55770 7.63471 7.72654 7.90598 8.01807 8.19094 8.29495 8.69245 8.95933 9.54912 11.04554 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.005890 B = 0.004553 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4752.995719 B = 6148.574260 C =10443.041781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.140 4.140 4 C -0.182 4.182 5 O -0.362 6.362 6 C 0.662 3.338 7 O -0.573 6.573 8 N -0.678 5.678 9 C 0.158 3.842 10 H 0.123 0.877 11 C -0.117 4.117 12 C 0.025 3.975 13 C -0.527 4.527 14 H 0.056 0.944 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.504 3.496 22 O -0.484 6.484 23 N -0.624 5.624 24 C 0.447 3.553 25 N -0.557 5.557 26 C 0.276 3.724 27 N -0.487 5.487 28 H 0.442 0.558 29 N -0.292 5.292 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.413 0.587 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.024 0.976 43 H 0.021 0.979 44 H 0.262 0.738 45 H 0.428 0.572 46 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.044 -4.572 -15.628 18.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.197 4.197 4 C -0.239 4.239 5 O -0.276 6.276 6 C 0.416 3.584 7 O -0.463 6.463 8 N -0.335 5.335 9 C 0.049 3.951 10 H 0.140 0.860 11 C -0.156 4.156 12 C -0.012 4.012 13 C -0.565 4.565 14 H 0.075 0.925 15 C -0.141 4.141 16 N -0.530 5.530 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C 0.289 3.711 22 O -0.352 6.352 23 N -0.280 5.280 24 C 0.078 3.922 25 N -0.290 5.290 26 C -0.024 4.024 27 N -0.207 5.207 28 H 0.288 0.712 29 N -0.129 5.129 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.250 0.750 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.042 0.958 43 H 0.040 0.960 44 H 0.072 0.928 45 H 0.267 0.733 46 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 9.061 -3.590 -16.322 19.010 hybrid contribution 0.384 -0.607 1.077 1.294 sum 9.445 -4.196 -15.245 18.418 Atomic orbital electron populations 1.22522 0.93978 1.05270 1.02342 1.22009 0.94407 0.91377 0.82222 1.21847 1.02124 0.92773 1.02981 1.22498 1.01497 1.03564 0.96317 1.86297 1.71427 1.23731 1.46171 1.17917 0.78350 0.80318 0.81840 1.90855 1.41574 1.70585 1.43273 1.44203 1.55368 1.10466 1.23510 1.21012 0.97351 0.78397 0.98312 0.85991 1.22098 1.03236 1.02081 0.88142 1.19116 0.92535 0.95226 0.94353 1.21122 1.18901 1.23765 0.92710 0.92546 1.24989 0.95342 0.94965 0.98841 1.69945 1.20949 1.26917 1.35150 0.86661 0.77734 0.78530 0.85095 1.20250 1.21314 1.20181 1.21900 0.86908 0.81185 0.81155 1.90775 1.31115 1.72987 1.40320 1.42865 1.29419 1.05425 1.50269 1.20560 0.90786 0.86856 0.94041 1.70232 1.25561 1.08259 1.24951 1.25904 0.87940 0.96241 0.92316 1.48128 1.26435 1.04356 1.41776 0.71206 1.78821 1.11591 1.03469 1.18976 0.91896 0.91492 0.89229 0.91603 0.90405 0.91340 0.89346 0.91523 0.92302 0.75024 0.90489 0.91482 0.95768 0.96018 0.92823 0.73334 0.75825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 8.37 37.16 0.31 -2.21 16 2 C 0.14 1.90 1.13 -90.62 -0.10 1.80 16 3 C -0.14 -1.50 8.85 37.15 0.33 -1.17 16 4 C -0.18 -2.46 8.37 37.16 0.31 -2.15 16 5 O -0.36 -6.10 9.94 -40.31 -0.40 -6.50 16 6 C 0.66 12.22 7.89 54.06 0.43 12.64 16 7 O -0.57 -11.30 11.54 -19.28 -0.22 -11.52 16 8 N -0.68 -11.89 4.06 -59.86 -0.24 -12.14 16 9 C 0.16 2.66 2.38 -69.08 -0.16 2.50 16 10 H 0.12 2.08 7.58 -51.93 -0.39 1.68 16 11 C -0.12 -2.08 4.64 -26.73 -0.12 -2.21 16 12 C 0.02 0.57 4.86 -27.88 -0.14 0.44 16 13 C -0.53 -13.80 9.11 -34.44 -0.31 -14.11 16 14 H 0.06 1.42 7.74 -52.49 -0.41 1.02 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 17 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 C 0.50 8.68 7.16 -10.99 -0.08 8.60 16 22 O -0.48 -9.77 15.01 5.55 0.08 -9.69 16 23 N -0.62 -9.39 5.30 -12.82 -0.07 -9.45 16 24 C 0.45 6.93 8.83 -320.84 -2.83 4.10 16 25 N -0.56 -7.20 11.21 -14.92 -0.17 -7.37 16 26 C 0.28 2.32 13.12 -90.68 -1.19 1.13 16 27 N -0.49 -4.68 7.44 29.52 0.22 -4.46 16 28 H 0.44 2.43 8.96 -182.34 -1.63 0.79 16 29 N -0.29 -4.59 10.98 30.04 0.33 -4.26 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.09 1.45 5.88 -51.93 -0.31 1.14 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.45 5.88 -51.93 -0.31 1.14 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.41 6.83 8.71 -40.82 -0.36 6.48 16 40 H 0.08 1.23 7.43 -51.93 -0.39 0.85 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.02 0.60 7.75 -51.94 -0.40 0.19 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 45 H 0.43 5.35 8.18 -40.82 -0.33 5.02 16 46 H 0.23 0.53 8.06 -52.48 -0.42 0.11 16 LS Contribution 387.54 15.07 5.84 5.84 Total: -1.00 -37.15 387.54 -10.46 -47.61 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -7.89 Total: 10.14 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: -3.66 Total: 10.92 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: 0.81 Total: -62.61 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.54 Total: -27.71 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.15 -10.46 -47.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497162815.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.982 kcal (2) G-P(sol) polarization free energy of solvation -37.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds