Wall clock time and date at job start Tue Mar 31 2020 22:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46838 * 2 1 4 4 C 1.52998 * 109.47310 * 240.00279 * 2 1 3 5 5 O 1.45198 * 109.47526 * 119.99711 * 2 1 3 6 6 C 1.34638 * 116.99619 * 60.00455 * 5 2 1 7 7 O 1.21511 * 120.00110 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99855 * 180.02562 * 6 5 2 9 9 C 1.46506 * 119.99688 * 179.97438 * 8 6 5 10 10 H 1.08990 * 109.47427 * 35.00063 * 9 8 6 11 11 C 1.53000 * 109.46901 * 155.00173 * 9 8 6 12 12 C 1.52997 * 109.47060 * 294.99627 * 11 9 8 13 13 C 1.50697 * 109.47466 * 180.02562 * 12 11 9 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46838 * 89.99826 * 17 15 13 19 19 H 1.48497 * 109.47419 * 209.99978 * 17 15 13 20 20 H 1.48499 * 109.47011 * 330.00539 * 17 15 13 21 21 C 1.50700 * 109.47030 * 274.99512 * 9 8 6 22 22 O 1.21287 * 119.99913 * 0.02562 * 21 9 8 23 23 N 1.34769 * 120.00131 * 180.02562 * 21 9 8 24 24 C 1.39865 * 120.00246 * 180.02562 * 23 21 9 25 25 N 1.33639 * 125.60575 * 180.02562 * 24 23 21 26 26 C 1.30848 * 109.77918 * 179.97438 * 25 24 23 27 27 N 1.34373 * 108.20690 * 0.02562 * 26 25 24 28 28 H 0.97004 * 126.77166 * 180.02562 * 27 26 25 29 29 N 1.31174 * 125.60452 * 359.69556 * 24 23 21 30 30 H 1.09000 * 109.46944 * 299.99507 * 1 2 3 31 31 H 1.09000 * 109.47406 * 60.00045 * 1 2 3 32 32 H 1.08999 * 109.46617 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47284 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47811 * 300.00281 * 3 2 1 35 35 H 1.08998 * 109.47454 * 60.00353 * 3 2 1 36 36 H 1.09000 * 109.46933 * 300.00024 * 4 2 1 37 37 H 1.09000 * 109.47151 * 59.99519 * 4 2 1 38 38 H 1.09002 * 109.47231 * 179.97438 * 4 2 1 39 39 H 0.96993 * 120.00319 * 0.02562 * 8 6 5 40 40 H 1.09002 * 109.47398 * 54.99796 * 11 9 8 41 41 H 1.09001 * 109.47194 * 174.99977 * 11 9 8 42 42 H 1.09002 * 109.47153 * 300.00319 * 12 11 9 43 43 H 1.08998 * 109.47533 * 59.99948 * 12 11 9 44 44 H 0.97002 * 119.99731 * 180.02562 * 16 15 13 45 45 H 0.97000 * 120.00365 * 0.02562 * 23 21 9 46 46 H 1.08005 * 125.89794 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0141 -0.6844 1.1855 6 6 1.6524 -1.9723 1.3383 7 8 0.9511 -2.5094 0.5040 8 7 2.0674 -2.6653 2.4171 9 6 1.6734 -4.0666 2.5836 10 1 1.6269 -4.5494 1.6075 11 6 2.7018 -4.7849 3.4594 12 6 4.0486 -4.8266 2.7347 13 6 5.0615 -5.5347 3.5971 14 1 4.7734 -5.9171 4.5651 15 6 6.3558 -5.6952 3.1499 16 7 6.7066 -5.2299 1.9708 17 14 7.6115 -6.5723 4.2191 18 1 7.5902 -8.0260 3.9164 19 1 8.9650 -6.0284 3.9407 20 1 7.2775 -6.3599 5.6504 21 6 0.3194 -4.1328 3.2418 22 8 -0.2597 -3.1102 3.5419 23 7 -0.2481 -5.3283 3.4970 24 6 -1.5050 -5.3898 4.1074 25 7 -2.1685 -6.5093 4.4112 26 6 -3.3113 -6.2082 4.9729 27 7 -3.4057 -4.8695 5.0413 28 1 -4.1427 -4.3574 5.4092 29 7 -2.2237 -4.3581 4.4814 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9565 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 1.6767 -1.7488 -1.2493 37 1 1.6767 -0.2074 -2.1392 38 1 3.1301 -0.7208 -1.2495 39 1 2.6264 -2.2363 3.0837 40 1 2.8131 -4.2497 4.4025 41 1 2.3638 -5.8022 3.6567 42 1 3.9374 -5.3618 1.7917 43 1 4.3867 -3.8094 2.5374 44 1 7.6171 -5.3431 1.6560 45 1 0.2151 -6.1461 3.2574 46 1 -4.0513 -6.9138 5.3207 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497162816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:07 Heat of formation + Delta-G solvation = -25.664132 kcal Electronic energy + Delta-G solvation = -30180.360080 eV Core-core repulsion = 25914.630165 eV Total energy + Delta-G solvation = -4265.729915 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.23416 -40.66464 -39.64312 -37.17229 -35.32867 -34.94983 -33.96155 -33.07168 -32.25813 -31.22011 -30.50322 -27.65792 -27.34565 -27.26352 -24.46220 -23.49168 -22.57430 -21.47181 -20.74807 -19.98268 -19.76758 -18.75457 -17.96905 -17.26763 -16.85127 -16.30693 -16.11870 -15.90176 -15.68154 -15.08470 -14.71529 -14.66001 -14.35568 -14.24472 -14.20371 -13.77389 -13.36626 -12.94049 -12.44069 -12.31314 -12.17116 -12.09099 -11.95830 -11.79833 -11.75069 -11.37402 -11.31338 -11.17846 -11.00910 -10.91403 -10.70432 -10.31977 -10.19112 -10.12923 -10.10106 -10.08329 -9.78174 -9.59584 -9.21582 -8.84319 -8.80887 -8.41492 -6.06486 -4.10310 1.50573 2.13557 2.36163 2.46197 2.91273 3.20734 3.26182 3.29073 3.36200 3.38705 4.30667 4.37915 4.40454 4.54809 4.80771 4.85117 4.91790 4.99407 5.23482 5.29980 5.44938 5.47337 5.50498 5.59647 5.71438 5.73938 5.83478 5.96126 6.02156 6.04414 6.06047 6.33361 6.36959 6.41344 6.54774 6.61838 6.75109 6.76216 6.80911 7.12854 7.55835 7.63303 7.72628 7.90499 8.01801 8.19099 8.29401 8.69214 8.96003 9.54780 11.04253 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.005890 B = 0.004553 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4752.842354 B = 6148.789841 C =10443.102567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.137 3.863 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.361 6.361 6 C 0.662 3.338 7 O -0.573 6.573 8 N -0.678 5.678 9 C 0.158 3.842 10 H 0.123 0.877 11 C -0.117 4.117 12 C 0.024 3.976 13 C -0.526 4.526 14 H 0.057 0.943 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.504 3.496 22 O -0.484 6.484 23 N -0.624 5.624 24 C 0.447 3.553 25 N -0.557 5.557 26 C 0.276 3.724 27 N -0.487 5.487 28 H 0.442 0.558 29 N -0.292 5.292 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.414 0.586 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.021 0.979 43 H 0.024 0.976 44 H 0.261 0.739 45 H 0.428 0.572 46 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.948 4.965 0.874 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.100 3.900 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.276 6.276 6 C 0.416 3.584 7 O -0.463 6.463 8 N -0.335 5.335 9 C 0.049 3.951 10 H 0.140 0.860 11 C -0.156 4.156 12 C -0.013 4.013 13 C -0.564 4.564 14 H 0.075 0.925 15 C -0.142 4.142 16 N -0.530 5.530 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.199 1.199 21 C 0.288 3.712 22 O -0.352 6.352 23 N -0.280 5.280 24 C 0.078 3.922 25 N -0.290 5.290 26 C -0.024 4.024 27 N -0.207 5.207 28 H 0.288 0.712 29 N -0.129 5.129 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.250 0.750 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.040 0.960 43 H 0.042 0.958 44 H 0.071 0.929 45 H 0.267 0.733 46 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -18.057 5.996 0.270 19.028 hybrid contribution 0.468 -0.643 1.006 1.282 sum -17.589 5.353 1.276 18.430 Atomic orbital electron populations 1.22497 0.94232 1.05116 1.02031 1.22007 0.94161 0.91455 0.82393 1.21848 1.02391 0.92707 1.02780 1.22521 1.01876 1.03569 0.96146 1.86297 1.71579 1.23613 1.46131 1.17918 0.78104 0.80372 0.82033 1.90856 1.41322 1.70380 1.43729 1.44199 1.54245 1.11293 1.23806 1.21011 0.89837 0.81955 1.02265 0.85992 1.22098 0.96456 0.98761 0.98240 1.19119 0.88527 0.98055 0.95565 1.21158 0.94797 1.37172 1.03289 0.92496 1.24996 0.98517 0.95619 0.95050 1.69963 1.18862 1.45750 1.18376 0.86600 0.80786 0.79840 0.80806 1.20619 1.21256 1.19868 1.21900 0.88436 0.82303 0.78512 1.90774 1.62795 1.33139 1.48483 1.42862 1.14132 1.11403 1.59576 1.20561 0.89125 0.87017 0.95537 1.70233 1.06795 1.28870 1.23112 1.25900 0.95510 0.85625 0.95361 1.48127 1.17614 1.06479 1.48474 0.71208 1.78825 0.94786 1.17401 1.21849 0.92301 0.91529 0.89342 0.91344 0.90405 0.91601 0.89232 0.91497 0.91894 0.75024 0.91478 0.90491 0.96021 0.95758 0.92889 0.73337 0.75827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.46 8.37 37.16 0.31 -2.15 16 2 C 0.14 1.90 1.13 -90.62 -0.10 1.80 16 3 C -0.14 -1.50 8.85 37.16 0.33 -1.17 16 4 C -0.18 -2.52 8.37 37.16 0.31 -2.21 16 5 O -0.36 -6.10 9.94 -40.32 -0.40 -6.50 16 6 C 0.66 12.21 7.89 54.06 0.43 12.64 16 7 O -0.57 -11.29 11.54 -19.28 -0.22 -11.52 16 8 N -0.68 -11.89 4.06 -59.86 -0.24 -12.13 16 9 C 0.16 2.66 2.38 -69.08 -0.16 2.50 16 10 H 0.12 2.08 7.58 -51.93 -0.39 1.68 16 11 C -0.12 -2.08 4.64 -26.73 -0.12 -2.21 16 12 C 0.02 0.57 4.86 -27.89 -0.14 0.43 16 13 C -0.53 -13.77 9.11 -34.44 -0.31 -14.09 16 14 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.66 13.29 55.43 0.74 -24.93 16 17 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 C 0.50 8.67 7.16 -10.99 -0.08 8.59 16 22 O -0.48 -9.77 15.01 5.55 0.08 -9.69 16 23 N -0.62 -9.38 5.30 -12.82 -0.07 -9.45 16 24 C 0.45 6.93 8.83 -320.84 -2.83 4.10 16 25 N -0.56 -7.20 11.21 -14.92 -0.17 -7.37 16 26 C 0.28 2.32 13.12 -90.69 -1.19 1.13 16 27 N -0.49 -4.68 7.44 29.52 0.22 -4.46 16 28 H 0.44 2.43 8.96 -182.34 -1.63 0.79 16 29 N -0.29 -4.59 10.98 30.04 0.33 -4.26 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.45 5.88 -51.93 -0.31 1.14 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.45 5.88 -51.93 -0.31 1.14 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.41 6.83 8.71 -40.82 -0.36 6.47 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.08 1.23 7.43 -51.93 -0.39 0.85 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.02 0.60 7.75 -51.93 -0.40 0.20 16 44 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.43 5.35 8.18 -40.82 -0.33 5.01 16 46 H 0.23 0.53 8.06 -52.48 -0.42 0.11 16 LS Contribution 387.53 15.07 5.84 5.84 Total: -1.00 -37.18 387.53 -10.46 -47.64 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -7.89 Total: 10.10 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: -3.66 Total: 10.92 kcal Atomic # 7 Polarization: -63.40 SS G_CDS: 0.81 Total: -62.59 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.54 Total: -27.71 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.18 -10.46 -47.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497162816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.978 kcal (2) G-P(sol) polarization free energy of solvation -37.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds