Wall clock time and date at job start Tue Mar 31 2020 22:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46838 * 2 1 4 4 C 1.52998 * 109.47310 * 240.00279 * 2 1 3 5 5 O 1.45198 * 109.47526 * 119.99711 * 2 1 3 6 6 C 1.34638 * 116.99619 * 60.00455 * 5 2 1 7 7 O 1.21511 * 120.00110 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99855 * 180.02562 * 6 5 2 9 9 C 1.46506 * 119.99688 * 179.97438 * 8 6 5 10 10 H 1.08990 * 109.47427 * 35.00063 * 9 8 6 11 11 C 1.53000 * 109.46901 * 155.00173 * 9 8 6 12 12 C 1.52997 * 109.47060 * 294.99627 * 11 9 8 13 13 C 1.50697 * 109.47466 * 180.02562 * 12 11 9 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46838 * 89.99826 * 17 15 13 19 19 H 1.48497 * 109.47419 * 209.99978 * 17 15 13 20 20 H 1.48499 * 109.47011 * 330.00539 * 17 15 13 21 21 C 1.50700 * 109.47030 * 274.99512 * 9 8 6 22 22 O 1.21287 * 119.99913 * 0.02562 * 21 9 8 23 23 N 1.34769 * 120.00131 * 180.02562 * 21 9 8 24 24 C 1.39865 * 120.00246 * 180.02562 * 23 21 9 25 25 N 1.33639 * 125.60575 * 180.02562 * 24 23 21 26 26 C 1.30848 * 109.77918 * 179.97438 * 25 24 23 27 27 N 1.34373 * 108.20690 * 0.02562 * 26 25 24 28 28 H 0.97004 * 126.77166 * 180.02562 * 27 26 25 29 29 N 1.31174 * 125.60452 * 359.69556 * 24 23 21 30 30 H 1.09000 * 109.46944 * 299.99507 * 1 2 3 31 31 H 1.09000 * 109.47406 * 60.00045 * 1 2 3 32 32 H 1.08999 * 109.46617 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47284 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47811 * 300.00281 * 3 2 1 35 35 H 1.08998 * 109.47454 * 60.00353 * 3 2 1 36 36 H 1.09000 * 109.46933 * 300.00024 * 4 2 1 37 37 H 1.09000 * 109.47151 * 59.99519 * 4 2 1 38 38 H 1.09002 * 109.47231 * 179.97438 * 4 2 1 39 39 H 0.96993 * 120.00319 * 0.02562 * 8 6 5 40 40 H 1.09002 * 109.47398 * 54.99796 * 11 9 8 41 41 H 1.09001 * 109.47194 * 174.99977 * 11 9 8 42 42 H 1.09002 * 109.47153 * 300.00319 * 12 11 9 43 43 H 1.08998 * 109.47533 * 59.99948 * 12 11 9 44 44 H 0.97002 * 119.99731 * 180.02562 * 16 15 13 45 45 H 0.97000 * 120.00365 * 0.02562 * 23 21 9 46 46 H 1.08005 * 125.89794 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0141 -0.6844 1.1855 6 6 1.6524 -1.9723 1.3383 7 8 0.9511 -2.5094 0.5040 8 7 2.0674 -2.6653 2.4171 9 6 1.6734 -4.0666 2.5836 10 1 1.6269 -4.5494 1.6075 11 6 2.7018 -4.7849 3.4594 12 6 4.0486 -4.8266 2.7347 13 6 5.0615 -5.5347 3.5971 14 1 4.7734 -5.9171 4.5651 15 6 6.3558 -5.6952 3.1499 16 7 6.7066 -5.2299 1.9708 17 14 7.6115 -6.5723 4.2191 18 1 7.5902 -8.0260 3.9164 19 1 8.9650 -6.0284 3.9407 20 1 7.2775 -6.3599 5.6504 21 6 0.3194 -4.1328 3.2418 22 8 -0.2597 -3.1102 3.5419 23 7 -0.2481 -5.3283 3.4970 24 6 -1.5050 -5.3898 4.1074 25 7 -2.1685 -6.5093 4.4112 26 6 -3.3113 -6.2082 4.9729 27 7 -3.4057 -4.8695 5.0413 28 1 -4.1427 -4.3574 5.4092 29 7 -2.2237 -4.3581 4.4814 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9565 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 1.6767 -1.7488 -1.2493 37 1 1.6767 -0.2074 -2.1392 38 1 3.1301 -0.7208 -1.2495 39 1 2.6264 -2.2363 3.0837 40 1 2.8131 -4.2497 4.4025 41 1 2.3638 -5.8022 3.6567 42 1 3.9374 -5.3618 1.7917 43 1 4.3867 -3.8094 2.5374 44 1 7.6171 -5.3431 1.6560 45 1 0.2151 -6.1461 3.2574 46 1 -4.0513 -6.9138 5.3207 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497162816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:06 Heat of formation + Delta-G solvation = -50.642794 kcal Electronic energy + Delta-G solvation = -30181.443236 eV Core-core repulsion = 25914.630165 eV Total energy + Delta-G solvation = -4266.813071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.16348 -42.01395 -40.94797 -38.47789 -36.85824 -36.18370 -35.30804 -34.80840 -33.22263 -32.75015 -31.63941 -29.30224 -28.36066 -28.28932 -26.16869 -24.66223 -23.67883 -22.80310 -22.21174 -21.28343 -21.03174 -19.66997 -19.31956 -18.74210 -18.08021 -17.93643 -17.44643 -17.01892 -16.93145 -16.47764 -16.33971 -15.78958 -15.56724 -15.47901 -15.37094 -15.15458 -14.68820 -14.43514 -14.13767 -13.65887 -13.34186 -13.16286 -13.06038 -12.90828 -12.85965 -12.84626 -12.67366 -12.55172 -12.50256 -12.34010 -12.31613 -11.84943 -11.80651 -11.40285 -11.34904 -11.15990 -11.13919 -11.08080 -11.06103 -10.50426 -10.24545 -9.93435 -8.14360 -6.24332 0.58815 0.95428 1.23364 1.33098 1.45670 1.46384 1.56552 1.77600 2.10805 2.16481 2.45700 3.11947 3.20721 3.33041 3.58866 3.75803 3.79505 3.80971 3.95244 4.02645 4.04646 4.48935 4.57651 4.59187 4.61262 4.74474 4.76245 4.79637 4.83723 4.87792 5.01462 5.09585 5.13347 5.17553 5.29422 5.36127 5.47615 5.53921 5.56105 5.71680 5.87113 5.88792 6.25286 6.32566 6.34982 6.83628 6.92737 7.15158 7.29221 7.45019 8.96866 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.005890 B = 0.004553 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4752.842354 B = 6148.789841 C =10443.102567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.121 3.879 3 C -0.134 4.134 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.656 3.344 7 O -0.591 6.591 8 N -0.680 5.680 9 C 0.167 3.833 10 H 0.118 0.882 11 C -0.099 4.099 12 C 0.031 3.969 13 C -0.537 4.537 14 H 0.066 0.934 15 C 0.004 3.996 16 N -0.931 5.931 17 Si 0.958 3.042 18 H -0.274 1.274 19 H -0.289 1.289 20 H -0.263 1.263 21 C 0.511 3.489 22 O -0.516 6.516 23 N -0.616 5.616 24 C 0.427 3.573 25 N -0.585 5.585 26 C 0.301 3.699 27 N -0.475 5.475 28 H 0.460 0.540 29 N -0.343 5.343 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.416 0.584 40 H 0.072 0.928 41 H 0.099 0.901 42 H -0.002 1.002 43 H 0.002 0.998 44 H 0.261 0.739 45 H 0.437 0.563 46 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.353 4.580 2.030 19.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.085 3.915 3 C -0.191 4.191 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.410 3.590 7 O -0.482 6.482 8 N -0.338 5.338 9 C 0.058 3.942 10 H 0.136 0.864 11 C -0.137 4.137 12 C -0.007 4.007 13 C -0.575 4.575 14 H 0.084 0.916 15 C -0.194 4.194 16 N -0.571 5.571 17 Si 0.783 3.217 18 H -0.199 1.199 19 H -0.214 1.214 20 H -0.187 1.187 21 C 0.295 3.705 22 O -0.387 6.387 23 N -0.272 5.272 24 C 0.057 3.943 25 N -0.319 5.319 26 C 0.003 3.997 27 N -0.196 5.196 28 H 0.309 0.691 29 N -0.181 5.181 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.126 0.874 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.116 0.884 38 H 0.076 0.924 39 H 0.253 0.747 40 H 0.091 0.909 41 H 0.117 0.883 42 H 0.017 0.983 43 H 0.021 0.979 44 H 0.070 0.930 45 H 0.278 0.722 46 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -19.502 5.596 1.457 20.341 hybrid contribution 0.755 -0.537 0.647 1.130 sum -18.747 5.059 2.104 19.531 Atomic orbital electron populations 1.22429 0.93965 1.03366 1.03466 1.22489 0.94620 0.92944 0.81422 1.21884 1.02371 0.90356 1.04473 1.22477 1.01486 1.02221 0.97523 1.86312 1.71686 1.22765 1.47687 1.18096 0.77993 0.80941 0.81959 1.90844 1.42090 1.70919 1.44321 1.44269 1.54208 1.11545 1.23795 1.20853 0.89820 0.81691 1.01835 0.86402 1.21846 0.93852 1.00335 0.97654 1.18951 0.90898 0.96012 0.94803 1.21640 0.95464 1.36613 1.03806 0.91569 1.25864 1.00802 0.96528 0.96229 1.70100 1.19270 1.47473 1.20254 0.85551 0.77953 0.78716 0.79436 1.19936 1.21448 1.18737 1.21690 0.88162 0.82540 0.78077 1.90753 1.63594 1.34361 1.49963 1.42632 1.14508 1.11001 1.59023 1.20716 0.89267 0.87993 0.96375 1.70249 1.08435 1.28406 1.24790 1.27076 0.94765 0.85661 0.92218 1.47991 1.16588 1.07280 1.47788 0.69098 1.78669 0.96980 1.19239 1.23185 0.92432 0.88462 0.92581 0.91406 0.87352 0.91232 0.92218 0.88425 0.92388 0.74692 0.90915 0.88304 0.98335 0.97934 0.93005 0.72213 0.69768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.69 8.37 71.98 0.60 -4.09 16 2 C 0.12 3.35 1.13 -10.79 -0.01 3.33 16 3 C -0.13 -2.64 8.85 71.98 0.64 -2.00 16 4 C -0.18 -4.92 8.37 71.98 0.60 -4.32 16 5 O -0.37 -12.85 9.94 -55.48 -0.55 -13.41 16 6 C 0.66 25.31 7.89 129.79 1.02 26.33 16 7 O -0.59 -24.46 11.54 19.81 0.23 -24.23 16 8 N -0.68 -24.92 4.06 -573.72 -2.33 -27.25 16 9 C 0.17 5.80 2.38 44.24 0.11 5.90 16 10 H 0.12 4.21 7.58 -2.39 -0.02 4.19 16 11 C -0.10 -3.53 4.64 30.59 0.14 -3.39 16 12 C 0.03 1.45 4.86 29.85 0.15 1.60 16 13 C -0.54 -28.20 9.11 25.60 0.23 -27.97 16 14 H 0.07 3.28 7.74 -2.91 -0.02 3.26 16 15 C 0.00 0.21 5.46 84.65 0.46 0.67 16 16 N -0.93 -54.74 13.29 21.45 0.28 -54.46 16 17 Si 0.96 42.66 29.54 68.60 2.03 44.68 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 21 C 0.51 17.96 7.16 87.66 0.63 18.59 16 22 O -0.52 -21.42 15.01 -3.05 -0.05 -21.47 16 23 N -0.62 -18.61 5.30 -312.86 -1.66 -20.27 16 24 C 0.43 13.02 8.83 260.80 2.30 15.32 16 25 N -0.58 -14.08 11.21 -201.13 -2.25 -16.34 16 26 C 0.30 4.09 13.12 180.37 2.37 6.45 16 27 N -0.47 -8.16 7.44 -60.51 -0.45 -8.61 16 28 H 0.46 4.00 8.96 -213.10 -1.91 2.09 16 29 N -0.34 -10.66 10.98 -58.88 -0.65 -11.30 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 1.89 5.88 -2.39 -0.01 1.87 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 2.01 5.88 -2.39 -0.01 1.99 16 37 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.42 14.39 8.71 -92.71 -0.81 13.58 16 40 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.10 3.09 7.43 -2.39 -0.02 3.07 16 42 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.00 0.12 7.75 -2.39 -0.02 0.10 16 44 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 45 H 0.44 10.88 8.18 -92.71 -0.76 10.12 16 46 H 0.29 -0.21 8.06 -2.91 -0.02 -0.23 16 Total: -1.00 -83.94 387.53 1.41 -82.53 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: -2.43 Total: 33.67 kcal Atomic # 6 Polarization: 27.21 SS G_CDS: 9.24 Total: 36.45 kcal Atomic # 7 Polarization: -131.17 SS G_CDS: -7.06 Total: -138.23 kcal Atomic # 8 Polarization: -58.73 SS G_CDS: -0.37 Total: -59.10 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -83.94 1.41 -82.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497162816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.892 kcal (2) G-P(sol) polarization free energy of solvation -83.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds