Wall clock time and date at job start Tue Mar 31 2020 23:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47063 * 2 1 4 4 S 1.81405 * 109.47048 * 119.99594 * 2 1 3 5 5 C 1.81401 * 102.99934 * 175.00269 * 4 2 1 6 6 C 1.53001 * 109.46788 * 180.02562 * 5 4 2 7 7 N 1.46898 * 109.46688 * 180.02562 * 6 5 4 8 8 C 1.46906 * 110.99861 * 179.97438 * 7 6 5 9 9 C 1.52994 * 109.46996 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.46960 * 60.00222 * 9 8 7 11 11 O 1.42895 * 109.47770 * 299.99977 * 9 8 7 12 12 C 1.53005 * 109.47159 * 179.97438 * 9 8 7 13 13 O 1.42897 * 109.47198 * 185.00313 * 12 9 8 14 14 C 1.35683 * 116.99685 * 180.02562 * 13 12 9 15 15 C 1.39305 * 119.81261 * 180.02562 * 14 13 12 16 16 C 1.36441 * 120.18225 * 179.72110 * 15 14 13 17 17 C 1.40834 * 119.80994 * 0.26831 * 16 15 14 18 18 C 1.41215 * 120.17646 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00196 * 204.54801 * 18 17 16 20 20 C 1.39888 * 120.00093 * 24.55741 * 18 17 16 21 21 N 1.30881 * 120.00110 * 17.92429 * 20 18 17 22 22 Si 1.86803 * 119.99833 * 197.92928 * 20 18 17 23 23 H 1.48503 * 109.47208 * 59.99802 * 22 20 18 24 24 H 1.48511 * 109.47031 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47221 * 299.99522 * 22 20 18 26 26 C 1.40829 * 119.64178 * 0.02562 * 17 16 15 27 27 C 1.36431 * 119.81319 * 359.97438 * 26 17 16 28 28 H 1.08992 * 109.47604 * 300.00315 * 1 2 3 29 29 H 1.08997 * 109.47049 * 60.00839 * 1 2 3 30 30 H 1.09006 * 109.46763 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47420 * 239.99514 * 2 1 3 32 32 H 1.09001 * 109.46779 * 300.00192 * 3 2 1 33 33 H 1.09001 * 109.47400 * 59.99502 * 3 2 1 34 34 H 1.08999 * 109.47474 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.46901 * 60.00324 * 5 4 2 36 36 H 1.09000 * 109.46745 * 299.99915 * 5 4 2 37 37 H 1.09001 * 109.47251 * 59.99680 * 6 5 4 38 38 H 1.09001 * 109.46718 * 299.99676 * 6 5 4 39 39 H 1.00898 * 111.00380 * 56.04488 * 7 6 5 40 40 H 1.09003 * 109.47085 * 59.99862 * 8 7 6 41 41 H 1.08999 * 109.47089 * 299.99746 * 8 7 6 42 42 H 0.96703 * 113.99988 * 300.00629 * 11 9 8 43 43 H 1.09005 * 109.46782 * 65.00294 * 12 9 8 44 44 H 1.09002 * 109.47300 * 305.00838 * 12 9 8 45 45 H 1.08000 * 119.91135 * 359.97438 * 15 14 13 46 46 H 1.07999 * 120.09455 * 180.29138 * 16 15 14 47 47 H 0.97005 * 119.99879 * 180.02562 * 21 20 18 48 48 H 1.07999 * 120.09144 * 180.02562 * 26 17 16 49 49 H 1.08003 * 119.90891 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8550 1.4812 5 6 3.9308 -0.8873 1.2291 6 6 4.5994 -1.5888 2.4131 7 7 6.0539 -1.6144 2.2092 8 6 6.7309 -2.2816 3.3294 9 6 8.2406 -2.2892 3.0813 10 1 8.6003 -1.2636 2.9983 11 8 8.5207 -2.9918 1.8690 12 6 8.9457 -2.9835 4.2483 13 8 10.3608 -2.8883 4.0744 14 6 11.1385 -3.4581 5.0292 15 6 12.5259 -3.3995 4.9184 16 6 13.3150 -3.9649 5.8771 17 6 12.7231 -4.6140 6.9779 18 6 13.5325 -5.2015 7.9749 19 1 13.1450 -6.0087 8.5788 20 6 14.8362 -4.7377 8.1804 21 7 15.1937 -3.5653 7.7216 22 14 16.0669 -5.7920 9.1097 23 1 16.2529 -7.0810 8.3961 24 1 17.3674 -5.0795 9.1909 25 1 15.5590 -6.0538 10.4804 26 6 11.3198 -4.6741 7.0790 27 6 10.5450 -4.1036 6.1117 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4426 0.0005 35 1 4.3053 0.1334 1.1525 36 1 4.1591 -1.4281 0.3107 37 1 4.2247 -2.6096 2.4894 38 1 4.3711 -1.0484 3.3317 39 1 6.4162 -0.6829 2.0713 40 1 6.3714 -3.3073 3.4122 41 1 6.5170 -1.7458 4.2542 42 1 8.2273 -3.9132 1.8716 43 1 8.6529 -4.0331 4.2771 44 1 8.6612 -2.5012 5.1835 45 1 12.9781 -2.9015 4.0735 46 1 14.3905 -3.9146 5.7922 47 1 16.0979 -3.2439 7.8638 48 1 10.8582 -5.1697 7.9203 49 1 9.4686 -4.1483 6.1879 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514597374.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:51 Heat of formation + Delta-G solvation = -85.487092 kcal Electronic energy + Delta-G solvation = -25365.112088 eV Core-core repulsion = 21610.788519 eV Total energy + Delta-G solvation = -3754.323570 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.166 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.12194 -37.91831 -36.41167 -35.65931 -35.26074 -33.31793 -31.80092 -30.05264 -29.25465 -28.77849 -27.73687 -25.36110 -24.41614 -22.98919 -22.10492 -21.81404 -20.67485 -20.56049 -17.37051 -17.28408 -16.83703 -16.79031 -16.23866 -15.83397 -15.77817 -15.32049 -15.15276 -14.63281 -14.50115 -14.21895 -14.00026 -13.88135 -13.74857 -13.33037 -13.02019 -12.81698 -12.73181 -12.29883 -12.18168 -12.12493 -12.01345 -11.84758 -11.77633 -11.65483 -11.53087 -11.37955 -11.12572 -10.97800 -10.80581 -10.62174 -10.25276 -10.00869 -9.90244 -9.83996 -9.33579 -9.01990 -8.80182 -8.10503 -7.64665 -7.03595 -6.72495 -4.25900 1.15800 2.12178 2.78845 2.94811 3.07923 3.10316 3.22284 3.53681 3.95000 4.19977 4.24264 4.31807 4.40186 4.47586 4.58224 4.62027 4.71441 4.88361 4.93931 5.01104 5.04585 5.15628 5.16715 5.20790 5.25137 5.31297 5.37344 5.42548 5.45226 5.59897 5.60975 5.61494 5.66906 5.99438 6.05467 6.22445 6.52393 6.72597 6.94704 6.97583 7.10871 7.18244 7.45983 7.55333 7.74367 7.78864 8.00083 8.20242 8.44808 8.64882 8.89608 8.98437 10.21936 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.045603 B = 0.001337 C = 0.001321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.849910 B =20937.942809 C =21195.449471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.059 4.059 3 C -0.149 4.149 4 S -0.259 6.259 5 C -0.083 4.083 6 C 0.075 3.925 7 N -0.675 5.675 8 C 0.031 3.969 9 C 0.115 3.885 10 H 0.103 0.897 11 O -0.540 6.540 12 C 0.038 3.962 13 O -0.317 6.317 14 C -0.010 4.010 15 C -0.118 4.118 16 C -0.133 4.133 17 C 0.088 3.912 18 C -0.465 4.465 19 H 0.076 0.924 20 C 0.076 3.924 21 N -0.799 5.799 22 Si 0.907 3.093 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.199 4.199 27 C -0.168 4.168 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.039 0.961 39 H 0.344 0.656 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.372 0.628 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.097 0.903 46 H 0.126 0.874 47 H 0.281 0.719 48 H 0.094 0.906 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.293 7.273 -12.839 27.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.188 4.188 3 C -0.208 4.208 4 S -0.033 6.033 5 C -0.232 4.232 6 C -0.055 4.055 7 N -0.307 5.307 8 C -0.099 4.099 9 C 0.055 3.945 10 H 0.121 0.879 11 O -0.344 6.344 12 C -0.039 4.039 13 O -0.233 6.233 14 C -0.053 4.053 15 C -0.137 4.137 16 C -0.153 4.153 17 C 0.086 3.914 18 C -0.495 4.495 19 H 0.094 0.906 20 C -0.141 4.141 21 N -0.425 5.425 22 Si 0.732 3.268 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.219 4.219 27 C -0.187 4.187 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.162 0.838 40 H 0.098 0.902 41 H 0.062 0.938 42 H 0.218 0.782 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.116 0.884 46 H 0.143 0.857 47 H 0.091 0.909 48 H 0.112 0.888 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.375 7.142 -12.711 27.549 hybrid contribution 0.799 0.165 0.652 1.044 sum -22.576 7.307 -12.059 26.617 Atomic orbital electron populations 1.21613 0.91699 1.03067 1.02801 1.23082 0.99779 0.98503 0.97402 1.22109 1.01298 0.94437 1.02979 1.86877 1.06058 1.77583 1.32785 1.23327 0.92909 1.03987 1.02956 1.21617 0.87824 1.01054 0.95004 1.60324 1.02554 1.24903 1.42963 1.22578 0.94643 1.00499 0.92180 1.21830 0.90964 0.97479 0.84229 0.87916 1.86624 1.83942 1.27872 1.35963 1.23097 0.82715 1.00005 0.98085 1.85885 1.14992 1.75605 1.46782 1.18624 0.90262 1.04743 0.91693 1.19840 0.89968 1.03740 1.00185 1.20982 0.99497 1.01657 0.93125 1.17592 0.90927 0.90950 0.91943 1.19433 0.96827 1.16821 1.16372 0.90594 1.25871 0.99057 0.94256 0.94942 1.69827 1.19889 1.15394 1.37370 0.86387 0.79162 0.80891 0.80366 1.18868 1.20372 1.19103 1.20554 0.93985 1.07757 0.99577 1.20388 0.97472 1.04086 0.96725 0.91645 0.91052 0.91581 0.89442 0.91643 0.91322 0.92414 0.90108 0.89070 0.89994 0.94268 0.83815 0.90155 0.93780 0.78176 0.92840 0.92538 0.88434 0.85660 0.90853 0.88779 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.65 9.20 37.16 0.34 -0.31 16 2 C -0.06 -0.34 3.38 -26.73 -0.09 -0.43 16 3 C -0.15 -0.76 9.10 37.16 0.34 -0.42 16 4 S -0.26 -2.05 21.15 -107.50 -2.27 -4.32 16 5 C -0.08 -0.60 5.90 37.16 0.22 -0.38 16 6 C 0.07 0.60 5.69 -3.82 -0.02 0.57 16 7 N -0.68 -5.95 6.37 -113.78 -0.72 -6.68 16 8 C 0.03 0.29 5.35 -3.82 -0.02 0.27 16 9 C 0.12 1.40 3.45 -26.73 -0.09 1.31 16 10 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 11 O -0.54 -7.31 13.17 -40.06 -0.53 -7.83 16 12 C 0.04 0.58 4.37 37.16 0.16 0.74 16 13 O -0.32 -6.49 10.09 -23.58 -0.24 -6.73 16 14 C -0.01 -0.23 6.71 -38.79 -0.26 -0.49 16 15 C -0.12 -2.90 9.92 -39.83 -0.40 -3.30 16 16 C -0.13 -3.50 8.64 -39.25 -0.34 -3.84 16 17 C 0.09 2.37 5.57 -106.81 -0.60 1.77 16 18 C -0.46 -12.36 9.04 -37.83 -0.34 -12.71 16 19 H 0.08 1.94 7.91 -52.48 -0.41 1.52 16 20 C 0.08 1.91 5.13 -17.34 -0.09 1.82 16 21 N -0.80 -20.73 10.96 55.54 0.61 -20.13 16 22 Si 0.91 18.70 29.60 -169.99 -5.03 13.67 16 23 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 26 C -0.20 -4.90 9.74 -39.25 -0.38 -5.28 16 27 C -0.17 -3.79 8.96 -39.83 -0.36 -4.15 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.30 6.92 -51.93 -0.36 -0.06 16 35 H 0.08 0.53 7.14 -51.93 -0.37 0.16 16 36 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.34 2.83 8.73 -39.29 -0.34 2.49 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.37 3.91 9.05 45.56 0.41 4.32 16 43 H 0.05 0.76 7.63 -51.93 -0.40 0.37 16 44 H 0.06 0.82 7.66 -51.93 -0.40 0.42 16 45 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 46 H 0.13 3.36 6.16 -52.49 -0.32 3.04 16 47 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 48 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 49 H 0.09 1.78 6.27 -52.48 -0.33 1.45 16 LS Contribution 412.40 15.07 6.21 6.21 Total: -1.00 -29.72 412.40 -11.47 -41.19 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -7.58 Total: 9.44 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: -1.92 Total: -24.83 kcal Atomic # 7 Polarization: -26.69 SS G_CDS: -0.12 Total: -26.80 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.77 Total: -14.56 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Atomic # 16 Polarization: -2.05 SS G_CDS: -2.27 Total: -4.32 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -29.72 -11.47 -41.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514597374.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.293 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds