Wall clock time and date at job start Tue Mar 31 2020 23:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47063 * 2 1 4 4 S 1.81405 * 109.47048 * 119.99594 * 2 1 3 5 5 C 1.81401 * 102.99934 * 175.00269 * 4 2 1 6 6 C 1.53001 * 109.46788 * 180.02562 * 5 4 2 7 7 N 1.46898 * 109.46688 * 180.02562 * 6 5 4 8 8 C 1.46906 * 110.99861 * 179.97438 * 7 6 5 9 9 C 1.52994 * 109.46996 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.46960 * 60.00222 * 9 8 7 11 11 O 1.42895 * 109.47770 * 299.99977 * 9 8 7 12 12 C 1.53005 * 109.47159 * 179.97438 * 9 8 7 13 13 O 1.42897 * 109.47198 * 185.00313 * 12 9 8 14 14 C 1.35683 * 116.99685 * 180.02562 * 13 12 9 15 15 C 1.39305 * 119.81261 * 180.02562 * 14 13 12 16 16 C 1.36441 * 120.18225 * 179.72110 * 15 14 13 17 17 C 1.40834 * 119.80994 * 0.26831 * 16 15 14 18 18 C 1.41215 * 120.17646 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00196 * 204.54801 * 18 17 16 20 20 C 1.39888 * 120.00093 * 24.55741 * 18 17 16 21 21 N 1.30881 * 120.00110 * 17.92429 * 20 18 17 22 22 Si 1.86803 * 119.99833 * 197.92928 * 20 18 17 23 23 H 1.48503 * 109.47208 * 59.99802 * 22 20 18 24 24 H 1.48511 * 109.47031 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47221 * 299.99522 * 22 20 18 26 26 C 1.40829 * 119.64178 * 0.02562 * 17 16 15 27 27 C 1.36431 * 119.81319 * 359.97438 * 26 17 16 28 28 H 1.08992 * 109.47604 * 300.00315 * 1 2 3 29 29 H 1.08997 * 109.47049 * 60.00839 * 1 2 3 30 30 H 1.09006 * 109.46763 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47420 * 239.99514 * 2 1 3 32 32 H 1.09001 * 109.46779 * 300.00192 * 3 2 1 33 33 H 1.09001 * 109.47400 * 59.99502 * 3 2 1 34 34 H 1.08999 * 109.47474 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.46901 * 60.00324 * 5 4 2 36 36 H 1.09000 * 109.46745 * 299.99915 * 5 4 2 37 37 H 1.09001 * 109.47251 * 59.99680 * 6 5 4 38 38 H 1.09001 * 109.46718 * 299.99676 * 6 5 4 39 39 H 1.00898 * 111.00380 * 56.04488 * 7 6 5 40 40 H 1.09003 * 109.47085 * 59.99862 * 8 7 6 41 41 H 1.08999 * 109.47089 * 299.99746 * 8 7 6 42 42 H 0.96703 * 113.99988 * 300.00629 * 11 9 8 43 43 H 1.09005 * 109.46782 * 65.00294 * 12 9 8 44 44 H 1.09002 * 109.47300 * 305.00838 * 12 9 8 45 45 H 1.08000 * 119.91135 * 359.97438 * 15 14 13 46 46 H 1.07999 * 120.09455 * 180.29138 * 16 15 14 47 47 H 0.97005 * 119.99879 * 180.02562 * 21 20 18 48 48 H 1.07999 * 120.09144 * 180.02562 * 26 17 16 49 49 H 1.08003 * 119.90891 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8550 1.4812 5 6 3.9308 -0.8873 1.2291 6 6 4.5994 -1.5888 2.4131 7 7 6.0539 -1.6144 2.2092 8 6 6.7309 -2.2816 3.3294 9 6 8.2406 -2.2892 3.0813 10 1 8.6003 -1.2636 2.9983 11 8 8.5207 -2.9918 1.8690 12 6 8.9457 -2.9835 4.2483 13 8 10.3608 -2.8883 4.0744 14 6 11.1385 -3.4581 5.0292 15 6 12.5259 -3.3995 4.9184 16 6 13.3150 -3.9649 5.8771 17 6 12.7231 -4.6140 6.9779 18 6 13.5325 -5.2015 7.9749 19 1 13.1450 -6.0087 8.5788 20 6 14.8362 -4.7377 8.1804 21 7 15.1937 -3.5653 7.7216 22 14 16.0669 -5.7920 9.1097 23 1 16.2529 -7.0810 8.3961 24 1 17.3674 -5.0795 9.1909 25 1 15.5590 -6.0538 10.4804 26 6 11.3198 -4.6741 7.0790 27 6 10.5450 -4.1036 6.1117 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4426 0.0005 35 1 4.3053 0.1334 1.1525 36 1 4.1591 -1.4281 0.3107 37 1 4.2247 -2.6096 2.4894 38 1 4.3711 -1.0484 3.3317 39 1 6.4162 -0.6829 2.0713 40 1 6.3714 -3.3073 3.4122 41 1 6.5170 -1.7458 4.2542 42 1 8.2273 -3.9132 1.8716 43 1 8.6529 -4.0331 4.2771 44 1 8.6612 -2.5012 5.1835 45 1 12.9781 -2.9015 4.0735 46 1 14.3905 -3.9146 5.7922 47 1 16.0979 -3.2439 7.8638 48 1 10.8582 -5.1697 7.9203 49 1 9.4686 -4.1483 6.1879 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514597374.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:51 Heat of formation + Delta-G solvation = -103.647068 kcal Electronic energy + Delta-G solvation = -25365.899564 eV Core-core repulsion = 21610.788519 eV Total energy + Delta-G solvation = -3755.111045 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.166 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.65588 -39.12824 -37.89424 -36.64085 -35.67924 -35.17914 -32.66601 -31.72964 -30.97939 -30.05565 -28.16279 -26.88011 -25.77094 -23.63676 -23.23885 -22.50356 -22.44058 -22.06048 -19.25414 -18.74713 -17.86531 -17.49105 -17.25180 -17.04823 -16.70183 -16.47638 -16.04760 -15.74701 -15.59731 -15.43942 -15.21722 -14.95734 -14.71861 -14.22324 -14.13360 -14.06619 -13.90919 -13.71880 -13.46563 -13.17982 -13.02723 -12.86944 -12.78445 -12.62400 -12.52289 -12.38043 -12.29972 -12.18337 -12.02133 -11.92073 -11.70482 -11.58860 -11.21166 -10.92288 -10.87062 -10.78714 -9.56446 -9.48551 -8.92753 -8.71457 -8.59555 -6.22997 0.61801 0.95413 1.02534 1.39944 1.50821 1.54985 1.58797 2.22886 2.39750 2.72761 3.26019 3.54447 3.70165 3.78390 3.83690 3.90245 3.93524 3.93853 4.01898 4.08781 4.28689 4.30389 4.34252 4.37811 4.43910 4.46747 4.62272 4.69186 4.73806 4.75731 4.83015 4.84571 4.86606 4.93680 5.01616 5.07194 5.21423 5.21660 5.22879 5.28120 5.58203 5.64256 5.84378 5.88236 6.05487 6.26217 6.28801 6.56444 6.80050 6.88344 6.94951 7.10126 8.36876 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.045603 B = 0.001337 C = 0.001321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.849910 B =20937.942809 C =21195.449471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.052 4.052 3 C -0.147 4.147 4 S -0.299 6.299 5 C -0.071 4.071 6 C 0.081 3.919 7 N -0.681 5.681 8 C 0.041 3.959 9 C 0.125 3.875 10 H 0.096 0.904 11 O -0.559 6.559 12 C 0.029 3.971 13 O -0.330 6.330 14 C -0.001 4.001 15 C -0.134 4.134 16 C -0.152 4.152 17 C 0.054 3.946 18 C -0.501 4.501 19 H 0.077 0.923 20 C 0.035 3.965 21 N -0.831 5.831 22 Si 0.982 3.018 23 H -0.261 1.261 24 H -0.269 1.269 25 H -0.259 1.259 26 C -0.208 4.208 27 C -0.164 4.164 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.039 0.961 39 H 0.347 0.653 40 H 0.089 0.911 41 H 0.054 0.946 42 H 0.384 0.616 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.287 0.713 48 H 0.106 0.894 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.771 7.356 -13.179 29.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.180 4.180 3 C -0.206 4.206 4 S -0.073 6.073 5 C -0.219 4.219 6 C -0.049 4.049 7 N -0.313 5.313 8 C -0.088 4.088 9 C 0.065 3.935 10 H 0.114 0.886 11 O -0.365 6.365 12 C -0.048 4.048 13 O -0.246 6.246 14 C -0.045 4.045 15 C -0.153 4.153 16 C -0.172 4.172 17 C 0.052 3.948 18 C -0.531 4.531 19 H 0.095 0.905 20 C -0.179 4.179 21 N -0.458 5.458 22 Si 0.802 3.198 23 H -0.186 1.186 24 H -0.193 1.193 25 H -0.183 1.183 26 C -0.228 4.228 27 C -0.183 4.183 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.166 0.834 40 H 0.107 0.893 41 H 0.072 0.928 42 H 0.232 0.768 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.124 0.876 46 H 0.127 0.873 47 H 0.098 0.902 48 H 0.124 0.876 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -24.884 7.228 -13.064 29.020 hybrid contribution 1.080 0.215 0.626 1.266 sum -23.804 7.443 -12.439 27.870 Atomic orbital electron populations 1.21626 0.90991 1.02992 1.03417 1.23157 1.00265 0.98615 0.95990 1.22086 1.01127 0.93906 1.03441 1.87002 1.07106 1.78356 1.34843 1.23216 0.92111 1.04222 1.02398 1.21549 0.87201 1.00829 0.95284 1.60297 1.02991 1.25234 1.42802 1.22432 0.92394 1.01314 0.92710 1.21759 0.92445 0.96568 0.82752 0.88563 1.86593 1.84384 1.29026 1.36500 1.23500 0.79787 1.01459 1.00006 1.85878 1.17748 1.75062 1.45942 1.18699 0.90239 1.03556 0.91993 1.20005 0.91116 1.03932 1.00205 1.20896 0.99022 1.03190 0.94076 1.17953 0.92304 0.92011 0.92492 1.19703 0.98357 1.17709 1.17302 0.90528 1.26728 1.00398 0.95153 0.95656 1.69887 1.20669 1.16795 1.38472 0.85265 0.76656 0.78850 0.78999 1.18565 1.19326 1.18333 1.20807 0.93490 1.07941 1.00574 1.20695 0.99267 1.02727 0.95610 0.92065 0.89315 0.92020 0.89093 0.90222 0.91762 0.92665 0.89419 0.89405 0.90497 0.94286 0.83424 0.89311 0.92797 0.76763 0.91525 0.91460 0.87580 0.87272 0.90199 0.87601 0.85295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 9.20 71.98 0.66 -0.44 16 2 C -0.05 -0.53 3.38 30.60 0.10 -0.43 16 3 C -0.15 -1.26 9.10 71.98 0.66 -0.60 16 4 S -0.30 -4.48 21.15 -56.49 -1.19 -5.68 16 5 C -0.07 -0.94 5.90 71.98 0.42 -0.51 16 6 C 0.08 1.16 5.69 86.30 0.49 1.65 16 7 N -0.68 -10.65 6.37 -513.88 -3.27 -13.93 16 8 C 0.04 0.67 5.35 86.30 0.46 1.13 16 9 C 0.12 2.78 3.45 30.59 0.11 2.89 16 10 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 11 O -0.56 -14.12 13.17 -144.36 -1.90 -16.02 16 12 C 0.03 0.80 4.37 71.98 0.31 1.11 16 13 O -0.33 -13.04 10.09 -85.39 -0.86 -13.90 16 14 C 0.00 -0.04 6.71 22.79 0.15 0.11 16 15 C -0.13 -6.65 9.92 22.11 0.22 -6.43 16 16 C -0.15 -8.27 8.64 22.49 0.19 -8.07 16 17 C 0.05 2.99 5.57 -21.28 -0.12 2.87 16 18 C -0.50 -27.27 9.04 23.40 0.21 -27.05 16 19 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 20 C 0.03 1.77 5.13 85.23 0.44 2.20 16 21 N -0.83 -44.19 10.96 21.82 0.24 -43.95 16 22 Si 0.98 38.50 29.60 68.60 2.03 40.53 16 23 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 24 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 25 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 26 C -0.21 -10.22 9.74 22.48 0.22 -10.00 16 27 C -0.16 -7.17 8.96 22.11 0.20 -6.97 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.05 0.50 6.92 -2.39 -0.02 0.48 16 35 H 0.09 1.03 7.14 -2.39 -0.02 1.01 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.35 5.07 8.73 -89.70 -0.78 4.28 16 40 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.38 7.32 9.05 -74.06 -0.67 6.65 16 43 H 0.07 1.69 7.63 -2.38 -0.02 1.67 16 44 H 0.07 1.75 7.66 -2.39 -0.02 1.73 16 45 H 0.11 4.93 8.06 -2.91 -0.02 4.90 16 46 H 0.11 6.15 6.16 -2.91 -0.02 6.13 16 47 H 0.29 13.85 8.30 -92.70 -0.77 13.08 16 48 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 49 H 0.13 4.58 6.27 -2.91 -0.02 4.56 16 Total: -1.00 -64.52 412.40 -0.74 -65.26 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: -0.51 Total: 36.24 kcal Atomic # 6 Polarization: -53.29 SS G_CDS: 4.73 Total: -48.55 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -3.03 Total: -57.88 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -2.76 Total: -29.92 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Atomic # 16 Polarization: -4.48 SS G_CDS: -1.19 Total: -5.68 kcal Total: -64.52 -0.74 -65.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514597374.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.391 kcal (2) G-P(sol) polarization free energy of solvation -64.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds