Wall clock time and date at job start Tue Mar 31 2020 23:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47063 * 2 1 4 4 S 1.81396 * 109.47404 * 120.00199 * 2 1 3 5 5 C 1.81392 * 103.00260 * 175.00048 * 4 2 1 6 6 C 1.53003 * 109.47344 * 179.97438 * 5 4 2 7 7 N 1.46900 * 109.47114 * 180.02562 * 6 5 4 8 8 C 1.46905 * 110.99894 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.47069 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.47429 * 304.99911 * 9 8 7 11 11 O 1.42904 * 109.47383 * 64.99654 * 9 8 7 12 12 C 1.52999 * 109.47064 * 184.99671 * 9 8 7 13 13 O 1.42906 * 109.47017 * 174.99934 * 12 9 8 14 14 C 1.35672 * 116.99791 * 180.02562 * 13 12 9 15 15 C 1.39311 * 119.81899 * 359.72420 * 14 13 12 16 16 C 1.36438 * 120.18358 * 179.76209 * 15 14 13 17 17 C 1.40830 * 119.81289 * 0.51455 * 16 15 14 18 18 C 1.41218 * 120.17970 * 179.72046 * 17 16 15 19 19 H 1.07998 * 120.00072 * 24.56905 * 18 17 16 20 20 C 1.39890 * 120.00080 * 204.56816 * 18 17 16 21 21 N 1.30886 * 119.99515 * 17.93469 * 20 18 17 22 22 Si 1.86792 * 120.00234 * 197.93138 * 20 18 17 23 23 H 1.48508 * 109.47014 * 59.99897 * 22 20 18 24 24 H 1.48495 * 109.47153 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47147 * 300.00398 * 22 20 18 26 26 C 1.40830 * 119.63994 * 359.73973 * 17 16 15 27 27 C 1.36440 * 119.81285 * 359.97438 * 26 17 16 28 28 H 1.09000 * 109.47024 * 299.99859 * 1 2 3 29 29 H 1.09006 * 109.47391 * 59.99666 * 1 2 3 30 30 H 1.09004 * 109.47006 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47178 * 240.00540 * 2 1 3 32 32 H 1.08994 * 109.47011 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47384 * 300.00500 * 3 2 1 34 34 H 1.09005 * 109.46806 * 59.99812 * 3 2 1 35 35 H 1.09008 * 109.47130 * 59.99899 * 5 4 2 36 36 H 1.08996 * 109.47254 * 300.00254 * 5 4 2 37 37 H 1.08993 * 109.46661 * 60.00400 * 6 5 4 38 38 H 1.09002 * 109.47070 * 300.00104 * 6 5 4 39 39 H 1.00907 * 111.00070 * 303.95581 * 7 6 5 40 40 H 1.08992 * 109.46950 * 59.99491 * 8 7 6 41 41 H 1.09004 * 109.46612 * 299.99424 * 8 7 6 42 42 H 0.96696 * 113.99731 * 59.99663 * 11 9 8 43 43 H 1.08997 * 109.46979 * 55.00501 * 12 9 8 44 44 H 1.08992 * 109.47112 * 294.99780 * 12 9 8 45 45 H 1.08000 * 119.90560 * 0.02562 * 15 14 13 46 46 H 1.08003 * 120.09115 * 180.25228 * 16 15 14 47 47 H 0.96999 * 119.99379 * 180.02562 * 21 20 18 48 48 H 1.07998 * 120.09104 * 179.97438 * 26 17 16 49 49 H 1.07999 * 119.90304 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 16 2.1347 -0.8551 1.4810 5 6 3.9308 -0.8874 1.2289 6 6 4.5996 -1.5879 2.4134 7 7 6.0541 -1.6135 2.2094 8 6 6.7311 -2.2808 3.3295 9 6 8.2408 -2.2884 3.0814 10 1 8.4477 -2.7457 2.1138 11 8 8.7315 -0.9463 3.0884 12 6 8.9348 -3.0909 4.1837 13 8 10.3293 -3.1967 3.8899 14 6 11.0948 -3.8836 4.7747 15 6 10.5103 -4.4409 5.9099 16 6 11.2722 -5.1374 6.8021 17 6 12.6550 -5.2828 6.5785 18 6 13.4519 -5.9971 7.4999 19 1 13.0032 -6.7473 8.1341 20 6 14.8226 -5.7329 7.5912 21 7 15.3081 -4.6191 7.1047 22 14 15.9598 -6.9697 8.4074 23 1 15.8912 -8.2616 7.6783 24 1 17.3530 -6.4566 8.3766 25 1 15.5391 -7.1739 9.8169 26 6 13.2388 -4.7118 5.4311 27 6 12.4618 -4.0234 4.5457 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 4.3053 0.1334 1.1523 36 1 4.1591 -1.4281 0.3104 37 1 4.2252 -2.6086 2.4903 38 1 4.3713 -1.0468 3.3317 39 1 6.2886 -2.0531 1.3319 40 1 6.3717 -3.3064 3.4122 41 1 6.5173 -1.7450 4.2544 42 1 8.5815 -0.4770 3.9205 43 1 8.4981 -4.0882 4.2368 44 1 8.8023 -2.5848 5.1399 45 1 9.4504 -4.3249 6.0820 46 1 10.8168 -5.5722 7.6796 47 1 16.2586 -4.4361 7.1677 48 1 14.2986 -4.8185 5.2526 49 1 12.9080 -3.5845 3.6656 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514597375.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:55 Heat of formation + Delta-G solvation = -85.540287 kcal Electronic energy + Delta-G solvation = -25362.925585 eV Core-core repulsion = 21608.599708 eV Total energy + Delta-G solvation = -3754.325876 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.166 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.12448 -37.91750 -36.41499 -35.67151 -35.25447 -33.31790 -31.80999 -30.05081 -29.25212 -28.77544 -27.72426 -25.36194 -24.41749 -23.00185 -22.10962 -21.80944 -20.67630 -20.56130 -17.37933 -17.31277 -16.85595 -16.73085 -16.28638 -15.83773 -15.65729 -15.38872 -15.16591 -14.62412 -14.42626 -14.23252 -13.99895 -13.89247 -13.87484 -13.34735 -12.96094 -12.78665 -12.66718 -12.30808 -12.19336 -12.12847 -11.98920 -11.88223 -11.77835 -11.68453 -11.49569 -11.38497 -11.12531 -10.99828 -10.81906 -10.60413 -10.25240 -9.99634 -9.93524 -9.82940 -9.33621 -9.02031 -8.80302 -8.10574 -7.64773 -7.03627 -6.72458 -4.25895 1.15713 2.12118 2.78767 2.94700 3.07935 3.10243 3.22130 3.53769 3.94995 4.19857 4.24767 4.32662 4.38971 4.47171 4.57671 4.61815 4.71680 4.89426 4.93942 5.01875 5.05652 5.14483 5.16958 5.21453 5.25057 5.31239 5.37397 5.42344 5.45181 5.59906 5.60012 5.64647 5.66859 5.99245 6.05385 6.22372 6.52344 6.72463 6.93993 6.97485 7.10830 7.18223 7.45904 7.55256 7.74273 7.78753 8.00017 8.20167 8.44720 8.64822 8.89555 8.98358 10.22022 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.047960 B = 0.001339 C = 0.001314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.678102 B =20912.299716 C =21296.177516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.059 4.059 3 C -0.150 4.150 4 S -0.259 6.259 5 C -0.083 4.083 6 C 0.075 3.925 7 N -0.676 5.676 8 C 0.031 3.969 9 C 0.116 3.884 10 H 0.103 0.897 11 O -0.541 6.541 12 C 0.038 3.962 13 O -0.317 6.317 14 C -0.010 4.010 15 C -0.168 4.168 16 C -0.199 4.199 17 C 0.088 3.912 18 C -0.465 4.465 19 H 0.076 0.924 20 C 0.076 3.924 21 N -0.798 5.798 22 Si 0.907 3.093 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.133 4.133 27 C -0.118 4.118 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.039 0.961 38 H 0.082 0.918 39 H 0.343 0.657 40 H 0.044 0.956 41 H 0.081 0.919 42 H 0.372 0.628 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.281 0.719 48 H 0.126 0.874 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.482 8.310 -12.136 27.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.187 4.187 3 C -0.209 4.209 4 S -0.033 6.033 5 C -0.232 4.232 6 C -0.055 4.055 7 N -0.308 5.308 8 C -0.098 4.098 9 C 0.055 3.945 10 H 0.121 0.879 11 O -0.345 6.345 12 C -0.039 4.039 13 O -0.233 6.233 14 C -0.053 4.053 15 C -0.187 4.187 16 C -0.219 4.219 17 C 0.086 3.914 18 C -0.495 4.495 19 H 0.094 0.906 20 C -0.141 4.141 21 N -0.424 5.424 22 Si 0.732 3.268 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.153 4.153 27 C -0.137 4.137 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.057 0.943 38 H 0.100 0.900 39 H 0.161 0.839 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.218 0.782 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.092 0.908 48 H 0.143 0.857 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -23.506 8.601 -11.823 27.683 hybrid contribution 0.688 -0.977 0.060 1.196 sum -22.818 7.625 -11.764 26.780 Atomic orbital electron populations 1.21616 0.91712 1.03019 1.02840 1.23079 0.99764 0.98608 0.97286 1.22113 1.01429 0.94333 1.02986 1.86872 1.05996 1.77436 1.32991 1.23330 0.92940 1.05165 1.01777 1.21615 0.87359 0.99016 0.97505 1.60345 1.06298 1.58999 1.05170 1.22586 0.94510 0.97616 0.95130 1.21828 0.89577 0.83507 0.99548 0.87889 1.86630 1.82732 1.24533 1.40585 1.23101 0.83254 0.99676 0.97895 1.85885 1.17269 1.72471 1.47634 1.18624 0.90857 1.03227 0.92642 1.20389 0.97804 1.04013 0.96456 1.20553 0.95030 1.06370 0.99925 1.17592 0.91045 0.91053 0.91711 1.19432 0.92377 1.19026 1.18630 0.90600 1.25873 0.99023 0.94843 0.94405 1.69830 1.15235 1.20823 1.36540 0.86383 0.78674 0.81479 0.80258 1.18884 1.20366 1.19104 1.20981 0.99646 1.01071 0.93582 1.19841 0.90326 1.03126 1.00428 0.91592 0.91055 0.91640 0.89566 0.92278 0.91686 0.91254 0.88925 0.90243 0.94267 0.89974 0.83850 0.93809 0.90098 0.78153 0.92561 0.92819 0.88980 0.88780 0.90842 0.85662 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.65 9.20 37.16 0.34 -0.31 16 2 C -0.06 -0.34 3.38 -26.73 -0.09 -0.43 16 3 C -0.15 -0.78 9.10 37.16 0.34 -0.44 16 4 S -0.26 -2.05 21.15 -107.50 -2.27 -4.32 16 5 C -0.08 -0.60 5.90 37.16 0.22 -0.38 16 6 C 0.07 0.60 5.69 -3.82 -0.02 0.57 16 7 N -0.68 -5.97 6.45 -113.78 -0.73 -6.70 16 8 C 0.03 0.29 5.32 -3.82 -0.02 0.27 16 9 C 0.12 1.41 3.43 -26.73 -0.09 1.32 16 10 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 11 O -0.54 -7.42 13.25 -40.08 -0.53 -7.95 16 12 C 0.04 0.57 4.36 37.16 0.16 0.74 16 13 O -0.32 -6.49 10.09 -23.57 -0.24 -6.73 16 14 C -0.01 -0.24 6.71 -38.78 -0.26 -0.50 16 15 C -0.17 -3.79 8.96 -39.83 -0.36 -4.14 16 16 C -0.20 -4.90 9.74 -39.25 -0.38 -5.28 16 17 C 0.09 2.37 5.57 -106.81 -0.60 1.77 16 18 C -0.46 -12.36 9.04 -37.83 -0.34 -12.71 16 19 H 0.08 1.93 7.91 -52.49 -0.41 1.52 16 20 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 21 N -0.80 -20.74 10.96 55.54 0.61 -20.13 16 22 Si 0.91 18.70 29.59 -169.99 -5.03 13.67 16 23 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 26 C -0.13 -3.51 8.64 -39.25 -0.34 -3.85 16 27 C -0.12 -2.90 9.92 -39.83 -0.40 -3.30 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.33 6.92 -51.93 -0.36 -0.03 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.70 7.14 -51.92 -0.37 0.33 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.34 2.80 8.73 -39.29 -0.34 2.46 16 40 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.37 3.97 9.04 45.56 0.41 4.38 16 43 H 0.06 0.80 7.66 -51.93 -0.40 0.40 16 44 H 0.05 0.78 7.64 -51.93 -0.40 0.38 16 45 H 0.09 1.78 6.27 -52.49 -0.33 1.45 16 46 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 47 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 48 H 0.13 3.36 6.16 -52.49 -0.32 3.04 16 49 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 412.51 15.07 6.22 6.22 Total: -1.00 -29.81 412.51 -11.48 -41.29 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -7.58 Total: 9.51 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -1.92 Total: -24.85 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: -0.13 Total: -26.83 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.77 Total: -14.67 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Atomic # 16 Polarization: -2.05 SS G_CDS: -2.27 Total: -4.32 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -29.81 -11.48 -41.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514597375.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.252 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds