Wall clock time and date at job start Tue Mar 31 2020 23:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47063 * 2 1 4 4 S 1.81396 * 109.47404 * 120.00199 * 2 1 3 5 5 C 1.81392 * 103.00260 * 175.00048 * 4 2 1 6 6 C 1.53003 * 109.47344 * 179.97438 * 5 4 2 7 7 N 1.46900 * 109.47114 * 180.02562 * 6 5 4 8 8 C 1.46905 * 110.99894 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.47069 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.47429 * 304.99911 * 9 8 7 11 11 O 1.42904 * 109.47383 * 64.99654 * 9 8 7 12 12 C 1.52999 * 109.47064 * 184.99671 * 9 8 7 13 13 O 1.42906 * 109.47017 * 174.99934 * 12 9 8 14 14 C 1.35672 * 116.99791 * 180.02562 * 13 12 9 15 15 C 1.39311 * 119.81899 * 359.72420 * 14 13 12 16 16 C 1.36438 * 120.18358 * 179.76209 * 15 14 13 17 17 C 1.40830 * 119.81289 * 0.51455 * 16 15 14 18 18 C 1.41218 * 120.17970 * 179.72046 * 17 16 15 19 19 H 1.07998 * 120.00072 * 24.56905 * 18 17 16 20 20 C 1.39890 * 120.00080 * 204.56816 * 18 17 16 21 21 N 1.30886 * 119.99515 * 17.93469 * 20 18 17 22 22 Si 1.86792 * 120.00234 * 197.93138 * 20 18 17 23 23 H 1.48508 * 109.47014 * 59.99897 * 22 20 18 24 24 H 1.48495 * 109.47153 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47147 * 300.00398 * 22 20 18 26 26 C 1.40830 * 119.63994 * 359.73973 * 17 16 15 27 27 C 1.36440 * 119.81285 * 359.97438 * 26 17 16 28 28 H 1.09000 * 109.47024 * 299.99859 * 1 2 3 29 29 H 1.09006 * 109.47391 * 59.99666 * 1 2 3 30 30 H 1.09004 * 109.47006 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47178 * 240.00540 * 2 1 3 32 32 H 1.08994 * 109.47011 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47384 * 300.00500 * 3 2 1 34 34 H 1.09005 * 109.46806 * 59.99812 * 3 2 1 35 35 H 1.09008 * 109.47130 * 59.99899 * 5 4 2 36 36 H 1.08996 * 109.47254 * 300.00254 * 5 4 2 37 37 H 1.08993 * 109.46661 * 60.00400 * 6 5 4 38 38 H 1.09002 * 109.47070 * 300.00104 * 6 5 4 39 39 H 1.00907 * 111.00070 * 303.95581 * 7 6 5 40 40 H 1.08992 * 109.46950 * 59.99491 * 8 7 6 41 41 H 1.09004 * 109.46612 * 299.99424 * 8 7 6 42 42 H 0.96696 * 113.99731 * 59.99663 * 11 9 8 43 43 H 1.08997 * 109.46979 * 55.00501 * 12 9 8 44 44 H 1.08992 * 109.47112 * 294.99780 * 12 9 8 45 45 H 1.08000 * 119.90560 * 0.02562 * 15 14 13 46 46 H 1.08003 * 120.09115 * 180.25228 * 16 15 14 47 47 H 0.96999 * 119.99379 * 180.02562 * 21 20 18 48 48 H 1.07998 * 120.09104 * 179.97438 * 26 17 16 49 49 H 1.07999 * 119.90304 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 16 2.1347 -0.8551 1.4810 5 6 3.9308 -0.8874 1.2289 6 6 4.5996 -1.5879 2.4134 7 7 6.0541 -1.6135 2.2094 8 6 6.7311 -2.2808 3.3295 9 6 8.2408 -2.2884 3.0814 10 1 8.4477 -2.7457 2.1138 11 8 8.7315 -0.9463 3.0884 12 6 8.9348 -3.0909 4.1837 13 8 10.3293 -3.1967 3.8899 14 6 11.0948 -3.8836 4.7747 15 6 10.5103 -4.4409 5.9099 16 6 11.2722 -5.1374 6.8021 17 6 12.6550 -5.2828 6.5785 18 6 13.4519 -5.9971 7.4999 19 1 13.0032 -6.7473 8.1341 20 6 14.8226 -5.7329 7.5912 21 7 15.3081 -4.6191 7.1047 22 14 15.9598 -6.9697 8.4074 23 1 15.8912 -8.2616 7.6783 24 1 17.3530 -6.4566 8.3766 25 1 15.5391 -7.1739 9.8169 26 6 13.2388 -4.7118 5.4311 27 6 12.4618 -4.0234 4.5457 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 4.3053 0.1334 1.1523 36 1 4.1591 -1.4281 0.3104 37 1 4.2252 -2.6086 2.4903 38 1 4.3713 -1.0468 3.3317 39 1 6.2886 -2.0531 1.3319 40 1 6.3717 -3.3064 3.4122 41 1 6.5173 -1.7450 4.2544 42 1 8.5815 -0.4770 3.9205 43 1 8.4981 -4.0882 4.2368 44 1 8.8023 -2.5848 5.1399 45 1 9.4504 -4.3249 6.0820 46 1 10.8168 -5.5722 7.6796 47 1 16.2586 -4.4361 7.1677 48 1 14.2986 -4.8185 5.2526 49 1 12.9080 -3.5845 3.6656 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514597375.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:54 Heat of formation + Delta-G solvation = -103.830148 kcal Electronic energy + Delta-G solvation = -25363.718693 eV Core-core repulsion = 21608.599708 eV Total energy + Delta-G solvation = -3755.118984 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.166 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.65792 -39.13024 -37.89344 -36.66025 -35.67736 -35.17942 -32.67543 -31.72972 -30.97908 -30.04940 -28.15809 -26.87938 -25.77132 -23.64525 -23.25309 -22.49952 -22.44056 -22.06042 -19.25460 -18.75327 -17.89746 -17.45299 -17.27813 -17.03137 -16.76549 -16.33391 -16.11212 -15.75498 -15.60255 -15.48261 -15.15913 -14.88917 -14.71361 -14.44923 -14.13204 -14.06894 -13.92508 -13.56725 -13.41873 -13.18149 -13.07232 -12.82305 -12.78379 -12.63572 -12.55764 -12.38410 -12.33082 -12.17609 -12.00037 -11.92862 -11.71130 -11.58960 -11.21508 -10.93708 -10.86462 -10.78648 -9.56490 -9.48466 -8.92739 -8.71433 -8.59547 -6.22980 0.61792 0.95360 1.02496 1.39955 1.50823 1.54985 1.58796 2.22909 2.39697 2.72826 3.26365 3.52691 3.70111 3.79397 3.82485 3.89688 3.94083 3.95173 4.01547 4.08356 4.28714 4.30278 4.35009 4.36885 4.44187 4.46543 4.61158 4.69287 4.72177 4.77084 4.83136 4.85162 4.86495 4.93881 5.01755 5.07160 5.21633 5.21930 5.23779 5.28139 5.58205 5.64232 5.84362 5.88184 6.05470 6.26183 6.28771 6.56421 6.79902 6.87276 6.94935 7.10092 8.36947 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.047960 B = 0.001339 C = 0.001314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.678102 B =20912.299716 C =21296.177516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.051 4.051 3 C -0.147 4.147 4 S -0.299 6.299 5 C -0.072 4.072 6 C 0.081 3.919 7 N -0.682 5.682 8 C 0.042 3.958 9 C 0.125 3.875 10 H 0.098 0.902 11 O -0.561 6.561 12 C 0.029 3.971 13 O -0.331 6.331 14 C -0.001 4.001 15 C -0.164 4.164 16 C -0.208 4.208 17 C 0.055 3.945 18 C -0.501 4.501 19 H 0.077 0.923 20 C 0.034 3.966 21 N -0.831 5.831 22 Si 0.982 3.018 23 H -0.261 1.261 24 H -0.269 1.269 25 H -0.259 1.259 26 C -0.152 4.152 27 C -0.134 4.134 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.040 0.960 38 H 0.076 0.924 39 H 0.347 0.653 40 H 0.055 0.945 41 H 0.088 0.912 42 H 0.384 0.616 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.129 0.871 46 H 0.106 0.894 47 H 0.287 0.713 48 H 0.109 0.891 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.014 8.381 -12.468 29.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.180 4.180 3 C -0.206 4.206 4 S -0.073 6.073 5 C -0.220 4.220 6 C -0.049 4.049 7 N -0.315 5.315 8 C -0.088 4.088 9 C 0.065 3.935 10 H 0.116 0.884 11 O -0.367 6.367 12 C -0.048 4.048 13 O -0.246 6.246 14 C -0.045 4.045 15 C -0.183 4.183 16 C -0.228 4.228 17 C 0.052 3.948 18 C -0.531 4.531 19 H 0.095 0.905 20 C -0.180 4.180 21 N -0.458 5.458 22 Si 0.803 3.197 23 H -0.185 1.185 24 H -0.193 1.193 25 H -0.183 1.183 26 C -0.172 4.172 27 C -0.153 4.153 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.166 0.834 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.232 0.768 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.147 0.853 46 H 0.124 0.876 47 H 0.098 0.902 48 H 0.127 0.873 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -25.069 8.689 -12.161 29.187 hybrid contribution 0.992 -0.880 0.056 1.327 sum -24.077 7.809 -12.104 28.057 Atomic orbital electron populations 1.21627 0.90982 1.02989 1.03428 1.23153 1.00259 0.98599 0.95964 1.22087 1.01111 0.93978 1.03422 1.86998 1.07022 1.78168 1.35095 1.23221 0.92095 1.04946 1.01746 1.21546 0.86759 0.99003 0.97545 1.60314 1.06772 1.59131 1.05256 1.22438 0.92248 0.98512 0.95592 1.21773 0.91018 0.82446 0.98276 0.88400 1.86598 1.83197 1.25190 1.41727 1.23504 0.80448 1.01172 0.99646 1.85877 1.19941 1.71681 1.47133 1.18698 0.90773 1.02195 0.92833 1.20696 0.99507 1.02637 0.95455 1.20807 0.94543 1.06613 1.00850 1.17954 0.92435 0.92111 0.92253 1.19703 0.93756 1.19988 1.19628 0.90525 1.26733 1.00058 0.96390 0.94774 1.69891 1.15948 1.22378 1.37598 0.85260 0.76619 0.78611 0.79256 1.18544 1.19333 1.18346 1.20895 0.99233 1.02619 0.94451 1.20006 0.91450 1.03240 1.00558 0.92077 0.89315 0.91994 0.89013 0.92747 0.90213 0.91800 0.89241 0.89544 0.94225 0.90540 0.83393 0.92699 0.89342 0.76772 0.91186 0.91771 0.85295 0.87599 0.90197 0.87275 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.10 9.20 71.98 0.66 -0.44 16 2 C -0.05 -0.53 3.38 30.60 0.10 -0.42 16 3 C -0.15 -1.33 9.10 71.98 0.66 -0.68 16 4 S -0.30 -4.47 21.15 -56.49 -1.19 -5.67 16 5 C -0.07 -0.94 5.90 71.98 0.42 -0.52 16 6 C 0.08 1.16 5.69 86.30 0.49 1.65 16 7 N -0.68 -10.68 6.45 -513.89 -3.32 -14.00 16 8 C 0.04 0.68 5.32 86.30 0.46 1.14 16 9 C 0.12 2.79 3.43 30.59 0.10 2.89 16 10 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 11 O -0.56 -14.43 13.25 -144.34 -1.91 -16.34 16 12 C 0.03 0.79 4.36 71.98 0.31 1.11 16 13 O -0.33 -13.03 10.09 -85.26 -0.86 -13.89 16 14 C 0.00 -0.05 6.71 22.79 0.15 0.10 16 15 C -0.16 -7.16 8.96 22.11 0.20 -6.97 16 16 C -0.21 -10.22 9.74 22.48 0.22 -10.00 16 17 C 0.05 2.99 5.57 -21.28 -0.12 2.88 16 18 C -0.50 -27.26 9.04 23.40 0.21 -27.05 16 19 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 20 C 0.03 1.76 5.13 85.23 0.44 2.19 16 21 N -0.83 -44.24 10.96 21.82 0.24 -44.01 16 22 Si 0.98 38.50 29.59 68.60 2.03 40.53 16 23 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 24 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 25 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 26 C -0.15 -8.27 8.64 22.48 0.19 -8.08 16 27 C -0.13 -6.65 9.92 22.11 0.22 -6.43 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.09 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.54 6.92 -2.39 -0.02 0.53 16 33 H 0.08 0.49 8.14 -2.39 -0.02 0.48 16 34 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 35 H 0.09 1.24 7.14 -2.39 -0.02 1.22 16 36 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.35 5.00 8.73 -89.69 -0.78 4.21 16 40 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.38 7.51 9.04 -74.06 -0.67 6.84 16 43 H 0.07 1.77 7.66 -2.39 -0.02 1.75 16 44 H 0.06 1.66 7.64 -2.39 -0.02 1.64 16 45 H 0.13 4.57 6.27 -2.91 -0.02 4.55 16 46 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 47 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 48 H 0.11 6.15 6.16 -2.91 -0.02 6.13 16 49 H 0.11 4.93 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -64.72 412.51 -0.79 -65.51 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: -0.51 Total: 36.48 kcal Atomic # 6 Polarization: -53.34 SS G_CDS: 4.73 Total: -48.61 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -3.08 Total: -58.00 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -2.77 Total: -30.23 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Atomic # 16 Polarization: -4.47 SS G_CDS: -1.19 Total: -5.67 kcal Total: -64.72 -0.79 -65.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514597375.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.318 kcal (2) G-P(sol) polarization free energy of solvation -64.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds