Wall clock time and date at job start Tue Mar 31 2020 22:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47184 * 2 1 4 4 H 1.09002 * 109.47197 * 305.01933 * 3 2 1 5 5 C 1.52999 * 109.47209 * 65.01507 * 3 2 1 6 6 S 1.81396 * 109.47057 * 185.00082 * 5 3 2 7 7 C 1.81403 * 102.99838 * 180.02562 * 6 5 3 8 8 N 1.46903 * 109.47498 * 185.02021 * 3 2 1 9 9 C 1.46903 * 110.99988 * 88.59398 * 8 3 2 10 10 C 1.53003 * 109.46901 * 174.39215 * 9 8 3 11 11 H 1.08995 * 109.47437 * 59.99852 * 10 9 8 12 12 O 1.42903 * 109.46530 * 299.99886 * 10 9 8 13 13 C 1.53000 * 109.46985 * 180.02562 * 10 9 8 14 14 O 1.42901 * 109.46853 * 184.99604 * 13 10 9 15 15 C 1.35674 * 116.99710 * 180.02562 * 14 13 10 16 16 C 1.39315 * 119.81850 * 179.97438 * 15 14 13 17 17 C 1.36432 * 120.18581 * 180.25182 * 16 15 14 18 18 C 1.40834 * 119.81249 * 359.45979 * 17 16 15 19 19 C 1.41219 * 120.18046 * 180.24866 * 18 17 16 20 20 H 1.07998 * 119.99722 * 204.38928 * 19 18 17 21 21 C 1.39886 * 119.99569 * 24.39272 * 19 18 17 22 22 N 1.30882 * 120.00369 * 23.12362 * 21 19 18 23 23 Si 1.86803 * 120.00001 * 203.12181 * 21 19 18 24 24 H 1.48498 * 109.47010 * 94.79799 * 23 21 19 25 25 H 1.48492 * 109.47411 * 214.79931 * 23 21 19 26 26 H 1.48502 * 109.46860 * 334.80071 * 23 21 19 27 27 C 1.40832 * 119.64044 * 0.54306 * 18 17 16 28 28 C 1.36441 * 119.81142 * 359.72580 * 27 18 17 29 29 H 1.09001 * 109.47488 * 53.21682 * 1 2 3 30 30 H 1.09002 * 109.47102 * 173.21178 * 1 2 3 31 31 H 1.08998 * 109.47306 * 293.21019 * 1 2 3 32 32 H 1.09007 * 109.47741 * 239.99995 * 2 1 3 33 33 H 1.08999 * 109.47610 * 120.00029 * 2 1 3 34 34 H 1.08997 * 109.46862 * 305.00406 * 5 3 2 35 35 H 1.09005 * 109.46456 * 65.00264 * 5 3 2 36 36 H 1.09004 * 109.47361 * 180.02562 * 7 6 5 37 37 H 1.08998 * 109.47434 * 300.00098 * 7 6 5 38 38 H 1.09000 * 109.47287 * 60.00302 * 7 6 5 39 39 H 1.00901 * 110.99300 * 324.64127 * 8 3 2 40 40 H 1.08995 * 109.47195 * 54.38919 * 9 8 3 41 41 H 1.08997 * 109.47209 * 294.38760 * 9 8 3 42 42 H 0.96701 * 113.99976 * 299.99564 * 12 10 9 43 43 H 1.09005 * 109.46860 * 64.99923 * 13 10 9 44 44 H 1.08999 * 109.47134 * 304.99532 * 13 10 9 45 45 H 1.08001 * 119.90476 * 359.97438 * 16 15 14 46 46 H 1.08005 * 120.09469 * 179.70703 * 17 16 15 47 47 H 0.96999 * 120.00218 * 179.97438 * 22 21 19 48 48 H 1.08002 * 120.09512 * 179.71146 * 27 18 17 49 49 H 1.07993 * 119.90658 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6051 1.9817 -0.8416 5 6 1.6355 2.1265 1.3075 6 16 2.1099 3.8762 1.2465 7 6 1.5583 4.5049 2.8562 8 7 3.5040 1.4444 -0.1212 9 6 3.9155 1.4514 -1.5314 10 6 5.4363 1.5941 -1.6181 11 1 5.9097 0.7566 -1.1057 12 8 5.8358 2.8186 -0.9992 13 6 5.8649 1.6020 -3.0868 14 8 7.2916 1.6180 -3.1666 15 6 7.8389 1.6274 -4.4080 16 6 9.2243 1.6436 -4.5542 17 6 9.7827 1.6583 -5.7989 18 6 8.9545 1.6454 -6.9380 19 6 9.5243 1.6551 -8.2301 20 1 8.9566 2.0325 -9.0677 21 6 10.8239 1.1757 -8.4249 22 7 11.3438 0.3289 -7.5730 23 14 11.8176 1.7441 -9.9012 24 1 12.6751 2.8912 -9.5087 25 1 12.6722 0.6289 -10.3817 26 1 10.8952 2.1641 -10.9866 27 6 7.5550 1.6291 -6.7815 28 6 7.0126 1.6202 -5.5296 29 1 -0.3634 0.6153 -0.8230 30 1 -0.3633 -1.0205 -0.1215 31 1 -0.3634 0.4050 0.9445 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 0.5566 2.0469 1.4405 35 1 2.1414 1.6417 2.1426 36 1 1.7954 5.5661 2.9325 37 1 0.4814 4.3659 2.9510 38 1 2.0664 3.9607 3.6523 39 1 3.9083 0.6610 0.3696 40 1 3.4421 2.2888 -2.0438 41 1 3.6107 0.5174 -2.0035 42 1 5.4516 3.6079 -1.4047 43 1 5.4636 2.4888 -3.5776 44 1 5.4833 0.7088 -3.5815 45 1 9.8580 1.6492 -3.6796 46 1 10.8568 1.6756 -5.9105 47 1 12.2448 -0.0037 -7.7084 48 1 6.9130 1.6238 -7.6499 49 1 5.9396 1.6081 -5.4078 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567686071.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:12 Heat of formation + Delta-G solvation = -81.303007 kcal Electronic energy + Delta-G solvation = -26239.418473 eV Core-core repulsion = 22485.276339 eV Total energy + Delta-G solvation = -3754.142134 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.166 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.13524 -38.33238 -36.99228 -35.89754 -33.30801 -33.11837 -30.59986 -29.84969 -29.36247 -29.04989 -28.55073 -25.53042 -24.59112 -23.76066 -21.98321 -21.09934 -20.60664 -20.49801 -17.34867 -17.27128 -16.79608 -16.35110 -16.22886 -15.70283 -15.21651 -15.12530 -14.90066 -14.52361 -14.26373 -14.03040 -13.95937 -13.85828 -13.76891 -13.39211 -13.09334 -12.82063 -12.58683 -12.48018 -12.26597 -12.12838 -12.09387 -11.88249 -11.74710 -11.37220 -11.33306 -11.20147 -11.14617 -10.91086 -10.73971 -10.58752 -10.10198 -9.97141 -9.80671 -9.80432 -9.31482 -8.97578 -8.62929 -7.71682 -7.63072 -7.04344 -6.74407 -4.22574 1.48547 2.45066 2.79171 2.96235 3.09717 3.13316 3.23236 3.49834 3.96037 4.20039 4.30424 4.45867 4.54845 4.61084 4.70537 4.79775 4.84011 4.87384 4.94085 4.99457 5.04858 5.16760 5.22870 5.27538 5.34622 5.38076 5.41481 5.48676 5.55732 5.64418 5.66683 5.68509 5.77106 6.07785 6.08611 6.24998 6.66368 6.75018 6.98856 7.08042 7.12568 7.18468 7.46291 7.56981 7.80872 7.87973 8.02014 8.20482 8.47006 8.66904 8.90412 9.00537 10.20356 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024803 B = 0.001722 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.612981 B =16258.657844 C =16767.440070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.150 4.150 3 C 0.103 3.897 4 H 0.086 0.914 5 C -0.077 4.077 6 S -0.226 6.226 7 C -0.133 4.133 8 N -0.664 5.664 9 C 0.033 3.967 10 C 0.117 3.883 11 H 0.101 0.899 12 O -0.536 6.536 13 C 0.038 3.962 14 O -0.317 6.317 15 C -0.010 4.010 16 C -0.116 4.116 17 C -0.137 4.137 18 C 0.090 3.910 19 C -0.468 4.468 20 H 0.077 0.923 21 C 0.079 3.921 22 N -0.792 5.792 23 Si 0.904 3.096 24 H -0.268 1.268 25 H -0.279 1.279 26 H -0.262 1.262 27 C -0.200 4.200 28 C -0.166 4.166 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.343 0.657 40 H 0.078 0.922 41 H 0.040 0.960 42 H 0.371 0.629 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.098 0.902 46 H 0.119 0.881 47 H 0.280 0.720 48 H 0.094 0.906 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.844 1.139 16.745 25.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.191 4.191 3 C -0.008 4.008 4 H 0.104 0.896 5 C -0.226 4.226 6 S 0.000 6.000 7 C -0.302 4.302 8 N -0.294 5.294 9 C -0.097 4.097 10 C 0.057 3.943 11 H 0.119 0.881 12 O -0.340 6.340 13 C -0.039 4.039 14 O -0.232 6.232 15 C -0.054 4.054 16 C -0.135 4.135 17 C -0.156 4.156 18 C 0.088 3.912 19 C -0.497 4.497 20 H 0.096 0.904 21 C -0.139 4.139 22 N -0.417 5.417 23 Si 0.728 3.272 24 H -0.193 1.193 25 H -0.204 1.204 26 H -0.186 1.186 27 C -0.220 4.220 28 C -0.185 4.185 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.162 0.838 40 H 0.096 0.904 41 H 0.058 0.942 42 H 0.217 0.783 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.116 0.884 46 H 0.137 0.863 47 H 0.091 0.909 48 H 0.112 0.888 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.627 1.846 16.618 25.031 hybrid contribution -0.919 -1.212 -0.505 1.603 sum -19.546 0.633 16.113 25.339 Atomic orbital electron populations 1.21773 0.95139 1.01980 1.02003 1.22260 0.97154 0.97035 1.02653 1.21361 0.88629 0.94302 0.96558 0.89633 1.23512 1.02704 0.94980 1.01417 1.87209 1.81190 1.08704 1.22873 1.23413 1.03535 1.04996 0.98257 1.60349 1.06770 1.50090 1.12208 1.22586 0.96386 1.01198 0.89550 1.21779 0.91776 0.89291 0.91438 0.88109 1.86633 1.73154 1.14754 1.59458 1.23118 0.83013 1.00943 0.96821 1.85887 1.18808 1.91182 1.27365 1.18594 0.92429 1.12268 0.82064 1.19813 0.90934 1.05400 0.97386 1.20845 0.99726 1.04515 0.90552 1.17579 0.90645 0.89512 0.93475 1.19446 0.98327 1.37334 0.94600 0.90446 1.25874 0.97926 0.92500 0.97609 1.69876 1.15717 1.20653 1.35499 0.86380 0.79838 0.79293 0.81687 1.19314 1.20402 1.18621 1.20537 0.95128 1.11588 0.94720 1.20397 0.96817 1.07940 0.93350 0.92397 0.92532 0.92541 0.91342 0.91400 0.90080 0.90269 0.88295 0.91164 0.90780 0.83811 0.90382 0.94180 0.78271 0.92949 0.92730 0.88429 0.86302 0.90874 0.88795 0.88983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.50 37.15 0.35 -0.43 16 2 C -0.15 -0.89 5.38 -26.73 -0.14 -1.03 16 3 C 0.10 0.75 2.07 -67.71 -0.14 0.61 16 4 H 0.09 0.70 7.65 -51.93 -0.40 0.30 16 5 C -0.08 -0.55 5.47 37.16 0.20 -0.35 16 6 S -0.23 -2.11 22.12 -107.50 -2.38 -4.49 16 7 C -0.13 -0.88 10.76 101.05 1.09 0.21 16 8 N -0.66 -5.86 5.81 -106.72 -0.62 -6.48 16 9 C 0.03 0.31 5.20 -3.82 -0.02 0.29 16 10 C 0.12 1.49 3.50 -26.73 -0.09 1.39 16 11 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 12 O -0.54 -7.70 13.17 -40.10 -0.53 -8.23 16 13 C 0.04 0.59 4.36 37.16 0.16 0.76 16 14 O -0.32 -6.61 10.09 -23.60 -0.24 -6.85 16 15 C -0.01 -0.24 6.71 -38.78 -0.26 -0.50 16 16 C -0.12 -2.88 9.92 -39.83 -0.40 -3.28 16 17 C -0.14 -3.63 8.66 -39.25 -0.34 -3.97 16 18 C 0.09 2.44 5.56 -106.80 -0.59 1.84 16 19 C -0.47 -12.51 9.01 -37.83 -0.34 -12.85 16 20 H 0.08 2.00 7.94 -52.49 -0.42 1.58 16 21 C 0.08 2.00 5.01 -17.34 -0.09 1.91 16 22 N -0.79 -20.68 11.29 55.54 0.63 -20.05 16 23 Si 0.90 18.77 29.62 -169.99 -5.03 13.74 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 26 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 27 C -0.20 -4.96 9.74 -39.25 -0.38 -5.35 16 28 C -0.17 -3.79 8.96 -39.83 -0.36 -4.15 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.26 6.80 -51.93 -0.35 -0.09 16 32 H 0.07 0.44 7.72 -51.93 -0.40 0.04 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.48 6.49 -51.93 -0.34 0.15 16 35 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.34 2.87 8.48 -39.29 -0.33 2.53 16 40 H 0.08 0.74 7.91 -51.93 -0.41 0.33 16 41 H 0.04 0.35 7.73 -51.93 -0.40 -0.05 16 42 H 0.37 4.38 9.04 45.56 0.41 4.79 16 43 H 0.05 0.78 7.65 -51.93 -0.40 0.38 16 44 H 0.05 0.81 7.65 -51.93 -0.40 0.41 16 45 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 46 H 0.12 3.20 6.35 -52.48 -0.33 2.87 16 47 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 48 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 49 H 0.09 1.81 6.27 -52.49 -0.33 1.48 16 LS Contribution 410.45 15.07 6.19 6.19 Total: -1.00 -30.11 410.45 -10.79 -40.91 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -7.46 Total: 10.17 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: -1.35 Total: -24.91 kcal Atomic # 7 Polarization: -26.54 SS G_CDS: 0.01 Total: -26.53 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.77 Total: -15.07 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Atomic # 16 Polarization: -2.11 SS G_CDS: -2.38 Total: -4.49 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -30.11 -10.79 -40.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567686071.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.397 kcal (2) G-P(sol) polarization free energy of solvation -30.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds