Wall clock time and date at job start Tue Mar 31 2020 22:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47184 * 2 1 4 4 H 1.09002 * 109.47197 * 305.01933 * 3 2 1 5 5 C 1.52999 * 109.47209 * 65.01507 * 3 2 1 6 6 S 1.81396 * 109.47057 * 185.00082 * 5 3 2 7 7 C 1.81403 * 102.99838 * 180.02562 * 6 5 3 8 8 N 1.46903 * 109.47498 * 185.02021 * 3 2 1 9 9 C 1.46903 * 110.99988 * 88.59398 * 8 3 2 10 10 C 1.53003 * 109.46901 * 174.39215 * 9 8 3 11 11 H 1.08995 * 109.47437 * 59.99852 * 10 9 8 12 12 O 1.42903 * 109.46530 * 299.99886 * 10 9 8 13 13 C 1.53000 * 109.46985 * 180.02562 * 10 9 8 14 14 O 1.42901 * 109.46853 * 184.99604 * 13 10 9 15 15 C 1.35674 * 116.99710 * 180.02562 * 14 13 10 16 16 C 1.39315 * 119.81850 * 179.97438 * 15 14 13 17 17 C 1.36432 * 120.18581 * 180.25182 * 16 15 14 18 18 C 1.40834 * 119.81249 * 359.45979 * 17 16 15 19 19 C 1.41219 * 120.18046 * 180.24866 * 18 17 16 20 20 H 1.07998 * 119.99722 * 204.38928 * 19 18 17 21 21 C 1.39886 * 119.99569 * 24.39272 * 19 18 17 22 22 N 1.30882 * 120.00369 * 23.12362 * 21 19 18 23 23 Si 1.86803 * 120.00001 * 203.12181 * 21 19 18 24 24 H 1.48498 * 109.47010 * 94.79799 * 23 21 19 25 25 H 1.48492 * 109.47411 * 214.79931 * 23 21 19 26 26 H 1.48502 * 109.46860 * 334.80071 * 23 21 19 27 27 C 1.40832 * 119.64044 * 0.54306 * 18 17 16 28 28 C 1.36441 * 119.81142 * 359.72580 * 27 18 17 29 29 H 1.09001 * 109.47488 * 53.21682 * 1 2 3 30 30 H 1.09002 * 109.47102 * 173.21178 * 1 2 3 31 31 H 1.08998 * 109.47306 * 293.21019 * 1 2 3 32 32 H 1.09007 * 109.47741 * 239.99995 * 2 1 3 33 33 H 1.08999 * 109.47610 * 120.00029 * 2 1 3 34 34 H 1.08997 * 109.46862 * 305.00406 * 5 3 2 35 35 H 1.09005 * 109.46456 * 65.00264 * 5 3 2 36 36 H 1.09004 * 109.47361 * 180.02562 * 7 6 5 37 37 H 1.08998 * 109.47434 * 300.00098 * 7 6 5 38 38 H 1.09000 * 109.47287 * 60.00302 * 7 6 5 39 39 H 1.00901 * 110.99300 * 324.64127 * 8 3 2 40 40 H 1.08995 * 109.47195 * 54.38919 * 9 8 3 41 41 H 1.08997 * 109.47209 * 294.38760 * 9 8 3 42 42 H 0.96701 * 113.99976 * 299.99564 * 12 10 9 43 43 H 1.09005 * 109.46860 * 64.99923 * 13 10 9 44 44 H 1.08999 * 109.47134 * 304.99532 * 13 10 9 45 45 H 1.08001 * 119.90476 * 359.97438 * 16 15 14 46 46 H 1.08005 * 120.09469 * 179.70703 * 17 16 15 47 47 H 0.96999 * 120.00218 * 179.97438 * 22 21 19 48 48 H 1.08002 * 120.09512 * 179.71146 * 27 18 17 49 49 H 1.07993 * 119.90658 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6051 1.9817 -0.8416 5 6 1.6355 2.1265 1.3075 6 16 2.1099 3.8762 1.2465 7 6 1.5583 4.5049 2.8562 8 7 3.5040 1.4444 -0.1212 9 6 3.9155 1.4514 -1.5314 10 6 5.4363 1.5941 -1.6181 11 1 5.9097 0.7566 -1.1057 12 8 5.8358 2.8186 -0.9992 13 6 5.8649 1.6020 -3.0868 14 8 7.2916 1.6180 -3.1666 15 6 7.8389 1.6274 -4.4080 16 6 9.2243 1.6436 -4.5542 17 6 9.7827 1.6583 -5.7989 18 6 8.9545 1.6454 -6.9380 19 6 9.5243 1.6551 -8.2301 20 1 8.9566 2.0325 -9.0677 21 6 10.8239 1.1757 -8.4249 22 7 11.3438 0.3289 -7.5730 23 14 11.8176 1.7441 -9.9012 24 1 12.6751 2.8912 -9.5087 25 1 12.6722 0.6289 -10.3817 26 1 10.8952 2.1641 -10.9866 27 6 7.5550 1.6291 -6.7815 28 6 7.0126 1.6202 -5.5296 29 1 -0.3634 0.6153 -0.8230 30 1 -0.3633 -1.0205 -0.1215 31 1 -0.3634 0.4050 0.9445 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 0.5566 2.0469 1.4405 35 1 2.1414 1.6417 2.1426 36 1 1.7954 5.5661 2.9325 37 1 0.4814 4.3659 2.9510 38 1 2.0664 3.9607 3.6523 39 1 3.9083 0.6610 0.3696 40 1 3.4421 2.2888 -2.0438 41 1 3.6107 0.5174 -2.0035 42 1 5.4516 3.6079 -1.4047 43 1 5.4636 2.4888 -3.5776 44 1 5.4833 0.7088 -3.5815 45 1 9.8580 1.6492 -3.6796 46 1 10.8568 1.6756 -5.9105 47 1 12.2448 -0.0037 -7.7084 48 1 6.9130 1.6238 -7.6499 49 1 5.9396 1.6081 -5.4078 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567686071.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:11 Heat of formation + Delta-G solvation = -100.009139 kcal Electronic energy + Delta-G solvation = -26240.229631 eV Core-core repulsion = 22485.276339 eV Total energy + Delta-G solvation = -3754.953293 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.166 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.64910 -39.34850 -38.28379 -37.28451 -35.19088 -33.83426 -31.93137 -31.19826 -30.83353 -30.05194 -29.37128 -26.91903 -25.95803 -24.49816 -23.21656 -22.45485 -22.27874 -21.48604 -19.25212 -18.74745 -17.81288 -17.33766 -17.28209 -17.01470 -16.48244 -15.97701 -15.92472 -15.72838 -15.53625 -15.13745 -15.06569 -14.73333 -14.67152 -14.26914 -14.16177 -14.09505 -13.92326 -13.71446 -13.52085 -13.25369 -13.03149 -12.99788 -12.83108 -12.65428 -12.59239 -12.45465 -12.36889 -11.90416 -11.86410 -11.70284 -11.67091 -11.57566 -11.20582 -10.89524 -10.85149 -10.69529 -9.57046 -9.28670 -8.95736 -8.63044 -8.41945 -6.21275 0.90068 0.95060 1.01465 1.39665 1.52434 1.53563 1.87368 2.22426 2.39758 2.69747 3.21060 3.58533 3.69312 3.76868 3.90942 3.95898 4.05359 4.14260 4.18547 4.28850 4.29908 4.35276 4.37463 4.38907 4.40231 4.47079 4.53098 4.62648 4.69683 4.79367 4.86089 4.88184 4.92762 5.04073 5.08010 5.11817 5.19531 5.21141 5.27018 5.36120 5.56829 5.63705 5.88368 6.01346 6.05262 6.25042 6.42955 6.55698 6.80609 6.91979 6.93967 7.10598 8.34122 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024803 B = 0.001722 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.612981 B =16258.657844 C =16767.440070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.143 4.143 3 C 0.108 3.892 4 H 0.078 0.922 5 C -0.062 4.062 6 S -0.292 6.292 7 C -0.120 4.120 8 N -0.674 5.674 9 C 0.046 3.954 10 C 0.126 3.874 11 H 0.094 0.906 12 O -0.556 6.556 13 C 0.030 3.970 14 O -0.331 6.331 15 C -0.002 4.002 16 C -0.132 4.132 17 C -0.156 4.156 18 C 0.057 3.943 19 C -0.503 4.503 20 H 0.077 0.923 21 C 0.038 3.962 22 N -0.825 5.825 23 Si 0.979 3.021 24 H -0.264 1.264 25 H -0.268 1.268 26 H -0.257 1.257 27 C -0.209 4.209 28 C -0.163 4.163 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.346 0.654 40 H 0.080 0.920 41 H 0.053 0.947 42 H 0.380 0.620 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.106 0.894 46 H 0.103 0.897 47 H 0.289 0.711 48 H 0.106 0.894 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.631 0.968 17.226 27.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.184 4.184 3 C -0.003 4.003 4 H 0.096 0.904 5 C -0.211 4.211 6 S -0.066 6.066 7 C -0.288 4.288 8 N -0.304 5.304 9 C -0.084 4.084 10 C 0.066 3.934 11 H 0.112 0.888 12 O -0.362 6.362 13 C -0.046 4.046 14 O -0.247 6.247 15 C -0.046 4.046 16 C -0.151 4.151 17 C -0.175 4.175 18 C 0.055 3.945 19 C -0.532 4.532 20 H 0.095 0.905 21 C -0.178 4.178 22 N -0.452 5.452 23 Si 0.800 3.200 24 H -0.189 1.189 25 H -0.193 1.193 26 H -0.181 1.181 27 C -0.229 4.229 28 C -0.181 4.181 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.165 0.835 40 H 0.098 0.902 41 H 0.071 0.929 42 H 0.228 0.772 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.124 0.876 46 H 0.121 0.879 47 H 0.099 0.901 48 H 0.124 0.876 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -20.446 1.675 17.120 26.719 hybrid contribution -0.498 -1.163 -0.477 1.352 sum -20.944 0.512 16.642 26.756 Atomic orbital electron populations 1.21768 0.94504 1.02243 1.02289 1.22186 0.97615 0.95839 1.02775 1.21335 0.87561 0.95086 0.96357 0.90404 1.23489 1.03506 0.92754 1.01317 1.87396 1.82082 1.11427 1.25689 1.23404 1.04347 1.05004 0.96086 1.60302 1.07907 1.50482 1.11725 1.22384 0.93741 1.01942 0.90286 1.21747 0.93793 0.88543 0.89306 0.88778 1.86601 1.73844 1.15716 1.59994 1.23507 0.80018 1.01941 0.99157 1.85881 1.22147 1.90821 1.25843 1.18669 0.92162 1.10349 0.83400 1.19985 0.92266 1.05725 0.97119 1.20765 0.99114 1.06266 0.91404 1.17941 0.91941 0.90699 0.93929 1.19687 0.99861 1.38960 0.94680 0.90496 1.26737 0.98417 0.91871 1.00732 1.69919 1.16421 1.21385 1.37428 0.85240 0.78075 0.78895 0.77782 1.18869 1.19293 1.18079 1.20789 0.94589 1.11382 0.96148 1.20700 0.98684 1.06481 0.92267 0.92640 0.92175 0.91878 0.91648 0.90851 0.88592 0.90122 0.87988 0.89752 0.90269 0.83527 0.90153 0.92863 0.77177 0.91881 0.91502 0.87587 0.87866 0.90093 0.87601 0.85366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.50 71.98 0.68 -0.54 16 2 C -0.14 -1.38 5.38 30.59 0.16 -1.21 16 3 C 0.11 1.37 2.07 44.92 0.09 1.46 16 4 H 0.08 1.14 7.65 -2.39 -0.02 1.12 16 5 C -0.06 -0.78 5.47 71.98 0.39 -0.39 16 6 S -0.29 -5.18 22.12 -56.49 -1.25 -6.43 16 7 C -0.12 -1.40 10.76 113.37 1.22 -0.18 16 8 N -0.67 -10.78 5.81 -491.56 -2.86 -13.64 16 9 C 0.05 0.79 5.20 86.30 0.45 1.23 16 10 C 0.13 3.00 3.50 30.60 0.11 3.10 16 11 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 12 O -0.56 -15.39 13.17 -144.32 -1.90 -17.29 16 13 C 0.03 0.87 4.36 71.98 0.31 1.18 16 14 O -0.33 -13.44 10.09 -85.26 -0.86 -14.30 16 15 C 0.00 -0.09 6.71 22.79 0.15 0.06 16 16 C -0.13 -6.66 9.92 22.11 0.22 -6.44 16 17 C -0.16 -8.54 8.66 22.48 0.19 -8.34 16 18 C 0.06 3.15 5.56 -21.28 -0.12 3.04 16 19 C -0.50 -27.51 9.01 23.40 0.21 -27.30 16 20 H 0.08 4.05 7.94 -2.91 -0.02 4.03 16 21 C 0.04 1.92 5.01 85.23 0.43 2.35 16 22 N -0.83 -44.07 11.29 21.82 0.25 -43.83 16 23 Si 0.98 38.70 29.62 68.60 2.03 40.74 16 24 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 25 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 26 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 27 C -0.21 -10.38 9.74 22.49 0.22 -10.16 16 28 C -0.16 -7.21 8.96 22.11 0.20 -7.02 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.43 6.80 -2.39 -0.02 0.42 16 32 H 0.06 0.69 7.72 -2.38 -0.02 0.67 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.10 0.92 6.49 -2.39 -0.02 0.91 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.35 5.20 8.48 -89.69 -0.76 4.44 16 40 H 0.08 1.36 7.91 -2.39 -0.02 1.34 16 41 H 0.05 0.78 7.73 -2.39 -0.02 0.76 16 42 H 0.38 8.61 9.04 -74.06 -0.67 7.94 16 43 H 0.06 1.71 7.65 -2.38 -0.02 1.69 16 44 H 0.07 1.80 7.65 -2.39 -0.02 1.78 16 45 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 46 H 0.10 5.84 6.35 -2.91 -0.02 5.82 16 47 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 48 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 49 H 0.13 4.66 6.27 -2.91 -0.02 4.64 16 Total: -1.00 -65.72 410.45 -0.14 -65.86 By element: Atomic # 1 Polarization: 38.50 SS G_CDS: -0.48 Total: 38.02 kcal Atomic # 6 Polarization: -54.07 SS G_CDS: 4.93 Total: -49.14 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -2.61 Total: -57.46 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -2.76 Total: -31.59 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.74 kcal Atomic # 16 Polarization: -5.18 SS G_CDS: -1.25 Total: -6.43 kcal Total: -65.72 -0.14 -65.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567686071.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.146 kcal (2) G-P(sol) polarization free energy of solvation -65.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds