Wall clock time and date at job start Tue Mar 31 2020 22:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47330 * 2 1 4 4 H 1.08995 * 109.47046 * 53.59511 * 3 2 1 5 5 C 1.53001 * 109.46726 * 293.59437 * 3 2 1 6 6 S 1.81399 * 109.47104 * 179.97438 * 5 3 2 7 7 C 1.81394 * 103.00047 * 180.02562 * 6 5 3 8 8 N 1.46904 * 109.47159 * 173.59792 * 3 2 1 9 9 C 1.46894 * 111.00091 * 270.05120 * 8 3 2 10 10 C 1.52998 * 109.47251 * 178.62019 * 9 8 3 11 11 H 1.08994 * 109.47002 * 304.99968 * 10 9 8 12 12 O 1.42901 * 109.46864 * 65.00023 * 10 9 8 13 13 C 1.53007 * 109.47127 * 184.99969 * 10 9 8 14 14 O 1.42901 * 109.47042 * 175.00145 * 13 10 9 15 15 C 1.35668 * 116.99669 * 179.97438 * 14 13 10 16 16 C 1.39315 * 119.82072 * 359.72466 * 15 14 13 17 17 C 1.36435 * 120.18221 * 179.75915 * 16 15 14 18 18 C 1.40829 * 119.81689 * 0.51521 * 17 16 15 19 19 C 1.41211 * 120.18167 * 179.72250 * 18 17 16 20 20 H 1.08005 * 120.00187 * 161.02337 * 19 18 17 21 21 C 1.39893 * 120.00288 * 341.02081 * 19 18 17 22 22 N 1.30883 * 119.99638 * 329.55039 * 21 19 18 23 23 Si 1.86794 * 120.00359 * 149.55051 * 21 19 18 24 24 H 1.48500 * 109.47039 * 94.96949 * 23 21 19 25 25 H 1.48502 * 109.47421 * 214.97283 * 23 21 19 26 26 H 1.48504 * 109.47086 * 334.97290 * 23 21 19 27 27 C 1.40833 * 119.63837 * 359.73635 * 18 17 16 28 28 C 1.36439 * 119.81471 * 0.02562 * 27 18 17 29 29 H 1.09000 * 109.47610 * 305.16724 * 1 2 3 30 30 H 1.09005 * 109.47009 * 65.16661 * 1 2 3 31 31 H 1.08996 * 109.47356 * 185.16153 * 1 2 3 32 32 H 1.09002 * 109.47194 * 239.99554 * 2 1 3 33 33 H 1.09003 * 109.47174 * 120.00283 * 2 1 3 34 34 H 1.08997 * 109.47211 * 300.00350 * 5 3 2 35 35 H 1.09004 * 109.46758 * 60.00180 * 5 3 2 36 36 H 1.09002 * 109.47319 * 60.00488 * 7 6 5 37 37 H 1.09010 * 109.47175 * 180.02562 * 7 6 5 38 38 H 1.08997 * 109.47518 * 299.99973 * 7 6 5 39 39 H 1.00903 * 110.99772 * 34.00419 * 8 3 2 40 40 H 1.09008 * 109.47022 * 298.62362 * 9 8 3 41 41 H 1.09007 * 109.47176 * 58.61411 * 9 8 3 42 42 H 0.96693 * 114.00258 * 60.00279 * 12 10 9 43 43 H 1.09006 * 109.46904 * 294.99885 * 13 10 9 44 44 H 1.08999 * 109.46787 * 54.99481 * 13 10 9 45 45 H 1.08000 * 119.90650 * 0.02562 * 16 15 14 46 46 H 1.08003 * 120.09209 * 180.25668 * 17 16 15 47 47 H 0.97002 * 119.99980 * 179.97438 * 22 21 19 48 48 H 1.08000 * 120.09497 * 179.97438 * 27 18 17 49 49 H 1.07993 * 119.91303 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5861 1.9883 0.8271 5 6 1.6656 2.1157 -1.3219 6 16 2.2696 3.8262 -1.3217 7 6 1.7381 4.4469 -2.9412 8 7 3.5009 1.4453 0.1544 9 6 3.8802 1.4961 1.5726 10 6 5.4050 1.4629 1.6942 11 1 5.7921 0.5881 1.1719 12 8 5.9551 2.6469 1.1131 13 6 5.7974 1.3899 3.1713 14 8 7.2145 1.2417 3.2810 15 6 7.7302 1.1615 4.5332 16 6 6.8831 1.2308 5.6371 17 6 7.3934 1.1461 6.8996 18 6 8.7816 0.9991 7.0855 19 6 9.3186 0.9166 8.3889 20 1 10.3058 0.5058 8.5413 21 6 8.5719 1.3668 9.4829 22 7 7.7198 2.3490 9.3338 23 14 8.7909 0.5663 11.1563 24 1 9.7702 1.3471 11.9542 25 1 7.4865 0.5363 11.8653 26 1 9.2903 -0.8211 10.9798 27 6 9.6315 0.9353 5.9643 28 6 9.1047 1.0166 4.7083 29 1 -0.3634 0.5919 0.8401 30 1 -0.3633 0.4316 -0.9327 31 1 -0.3634 -1.0234 0.0924 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.1195 1.5698 -2.1490 35 1 0.5816 2.1136 -1.4365 36 1 0.6522 4.3861 -3.0151 37 1 2.0527 5.4845 -3.0538 38 1 2.1901 3.8431 -3.7280 39 1 3.9143 0.6461 -0.3021 40 1 3.5002 2.4157 2.0177 41 1 3.4553 0.6379 2.0934 42 1 5.6535 3.4659 1.5293 43 1 5.4878 2.3057 3.6751 44 1 5.3055 0.5355 3.6361 45 1 5.8192 1.3475 5.4929 46 1 6.7349 1.1957 7.7543 47 1 7.2018 2.6610 10.0923 48 1 10.6972 0.8231 6.0983 49 1 9.7550 0.9683 3.8474 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567686072.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:14 Heat of formation + Delta-G solvation = -100.046732 kcal Electronic energy + Delta-G solvation = -26318.898280 eV Core-core repulsion = 22563.943357 eV Total energy + Delta-G solvation = -3754.954923 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.166 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.63806 -39.36199 -38.27974 -37.30096 -35.26822 -33.85747 -31.70683 -31.46907 -30.83770 -30.03845 -29.35967 -26.92863 -25.92947 -24.47049 -23.33090 -22.61886 -22.10152 -21.46912 -19.29348 -18.69530 -17.89070 -17.44190 -17.29972 -16.90083 -16.48966 -15.99713 -15.90049 -15.75018 -15.54544 -15.12135 -15.08807 -14.73486 -14.66373 -14.26808 -14.18187 -14.15895 -13.91568 -13.70786 -13.46817 -13.31867 -13.09875 -13.02625 -12.77633 -12.73843 -12.66484 -12.45288 -12.27389 -11.90649 -11.86631 -11.77146 -11.69259 -11.59807 -11.22422 -10.93193 -10.76116 -10.68169 -9.57493 -9.30769 -9.02738 -8.70364 -8.40979 -6.18225 0.90062 0.94452 1.03182 1.38434 1.47561 1.57610 1.88310 2.20513 2.39898 2.63563 3.20546 3.54700 3.69219 3.76301 3.89786 3.94169 4.03712 4.10047 4.18018 4.29148 4.29390 4.36932 4.37676 4.38333 4.39296 4.47793 4.51972 4.61022 4.69130 4.78522 4.86871 4.88071 4.92721 5.00836 5.07193 5.10948 5.13902 5.18611 5.33296 5.35100 5.51542 5.65183 5.96516 5.99509 6.03717 6.23359 6.42154 6.53776 6.78841 6.88167 6.91654 7.11413 8.25317 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018448 B = 0.001837 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.400770 B =15235.669600 C =15730.779665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.143 4.143 3 C 0.106 3.894 4 H 0.076 0.924 5 C -0.062 4.062 6 S -0.289 6.289 7 C -0.121 4.121 8 N -0.672 5.672 9 C 0.046 3.954 10 C 0.127 3.873 11 H 0.099 0.901 12 O -0.557 6.557 13 C 0.031 3.969 14 O -0.329 6.329 15 C -0.013 4.013 16 C -0.167 4.167 17 C -0.172 4.172 18 C 0.059 3.941 19 C -0.505 4.505 20 H 0.077 0.923 21 C 0.045 3.955 22 N -0.810 5.810 23 Si 0.974 3.026 24 H -0.261 1.261 25 H -0.264 1.264 26 H -0.259 1.259 27 C -0.215 4.215 28 C -0.116 4.116 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.346 0.654 40 H 0.078 0.922 41 H 0.052 0.948 42 H 0.381 0.619 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.117 0.883 46 H 0.101 0.899 47 H 0.291 0.709 48 H 0.108 0.892 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.165 -1.794 -18.793 26.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.184 4.184 3 C -0.005 4.005 4 H 0.095 0.905 5 C -0.210 4.210 6 S -0.063 6.063 7 C -0.290 4.290 8 N -0.303 5.303 9 C -0.084 4.084 10 C 0.067 3.933 11 H 0.117 0.883 12 O -0.363 6.363 13 C -0.045 4.045 14 O -0.245 6.245 15 C -0.057 4.057 16 C -0.186 4.186 17 C -0.191 4.191 18 C 0.056 3.944 19 C -0.533 4.533 20 H 0.095 0.905 21 C -0.172 4.172 22 N -0.435 5.435 23 Si 0.794 3.206 24 H -0.185 1.185 25 H -0.188 1.188 26 H -0.183 1.183 27 C -0.234 4.234 28 C -0.134 4.134 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.098 0.902 39 H 0.165 0.835 40 H 0.096 0.904 41 H 0.070 0.930 42 H 0.229 0.771 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.135 0.865 46 H 0.119 0.881 47 H 0.102 0.898 48 H 0.126 0.874 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.309 -0.806 -18.573 25.401 hybrid contribution -1.084 -1.170 0.767 1.770 sum -18.393 -1.976 -17.806 25.676 Atomic orbital electron populations 1.21765 0.94493 1.02264 1.02285 1.22182 0.97618 0.95769 1.02791 1.21338 0.87738 0.95234 0.96183 0.90537 1.23491 1.03025 0.93376 1.01157 1.87473 1.78398 1.14841 1.25594 1.23414 1.04499 1.04984 0.96090 1.60373 1.08429 1.49130 1.12387 1.22400 0.93714 1.02125 0.90117 1.21754 0.92441 0.89564 0.89497 0.88310 1.86590 1.72294 1.15996 1.61412 1.23466 0.80648 1.01400 0.98993 1.85854 1.23123 1.90159 1.25352 1.18651 0.92886 1.11242 0.82929 1.20753 0.98471 1.06576 0.92811 1.20750 0.95296 1.07640 0.95429 1.17917 0.92196 0.90682 0.93557 1.19674 1.03506 1.38479 0.91617 0.90466 1.26756 0.92965 0.92455 1.05062 1.69961 1.19998 1.18208 1.35329 0.85333 0.79145 0.79929 0.76181 1.18533 1.18841 1.18318 1.20705 0.98382 1.12450 0.91890 1.19892 0.92198 1.04370 0.96980 0.92737 0.91819 0.92144 0.90722 0.91734 0.89995 0.88679 0.89821 0.88022 0.90204 0.83496 0.90404 0.92996 0.77098 0.92575 0.91636 0.86482 0.88132 0.89813 0.87413 0.86606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.57 71.98 0.69 -0.64 16 2 C -0.14 -1.47 5.37 30.59 0.16 -1.30 16 3 C 0.11 1.43 2.12 44.92 0.10 1.52 16 4 H 0.08 1.19 7.74 -2.39 -0.02 1.17 16 5 C -0.06 -0.81 5.42 71.98 0.39 -0.42 16 6 S -0.29 -5.32 21.96 -56.49 -1.24 -6.56 16 7 C -0.12 -1.46 10.76 113.37 1.22 -0.24 16 8 N -0.67 -11.29 5.77 -491.56 -2.84 -14.12 16 9 C 0.05 0.84 5.12 86.30 0.44 1.28 16 10 C 0.13 3.10 3.41 30.60 0.10 3.21 16 11 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 12 O -0.56 -15.74 13.25 -144.35 -1.91 -17.65 16 13 C 0.03 0.95 4.37 71.98 0.31 1.27 16 14 O -0.33 -13.41 10.09 -85.21 -0.86 -14.27 16 15 C -0.01 -0.62 6.71 22.79 0.15 -0.47 16 16 C -0.17 -7.91 8.96 22.11 0.20 -7.71 16 17 C -0.17 -9.14 8.74 22.48 0.20 -8.94 16 18 C 0.06 3.25 5.61 -21.28 -0.12 3.13 16 19 C -0.50 -27.52 8.97 23.40 0.21 -27.31 16 20 H 0.08 4.07 8.00 -2.91 -0.02 4.05 16 21 C 0.05 2.28 4.87 85.23 0.42 2.69 16 22 N -0.81 -42.16 11.43 21.82 0.25 -41.91 16 23 Si 0.97 37.77 29.65 68.60 2.03 39.80 16 24 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 25 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 26 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 27 C -0.21 -10.98 9.74 22.48 0.22 -10.76 16 28 C -0.12 -5.53 9.92 22.11 0.22 -5.31 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.47 6.86 -2.38 -0.02 0.45 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.74 7.70 -2.39 -0.02 0.72 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.09 0.96 6.73 -2.39 -0.02 0.95 16 36 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.35 5.42 8.39 -89.69 -0.75 4.67 16 40 H 0.08 1.47 8.09 -2.38 -0.02 1.45 16 41 H 0.05 0.83 7.70 -2.38 -0.02 0.82 16 42 H 0.38 8.93 9.04 -74.06 -0.67 8.26 16 43 H 0.06 1.68 7.63 -2.38 -0.02 1.66 16 44 H 0.07 1.86 7.66 -2.39 -0.02 1.84 16 45 H 0.12 4.78 6.27 -2.91 -0.02 4.76 16 46 H 0.10 5.49 6.24 -2.91 -0.02 5.47 16 47 H 0.29 13.51 8.30 -92.71 -0.77 12.75 16 48 H 0.11 5.14 8.06 -2.91 -0.02 5.11 16 49 H 0.12 4.98 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -64.92 410.73 -0.13 -65.05 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: -0.48 Total: 39.68 kcal Atomic # 6 Polarization: -54.92 SS G_CDS: 4.91 Total: -50.01 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -2.59 Total: -56.04 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -2.77 Total: -31.93 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Atomic # 16 Polarization: -5.32 SS G_CDS: -1.24 Total: -6.56 kcal Total: -64.92 -0.13 -65.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567686072.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.000 kcal (2) G-P(sol) polarization free energy of solvation -64.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds