Wall clock time and date at job start Tue Mar 31 2020 22:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47319 * 2 1 4 4 H 1.09003 * 109.46887 * 306.30794 * 3 2 1 5 5 C 1.52996 * 109.46963 * 66.30501 * 3 2 1 6 6 S 1.81404 * 109.46867 * 185.00081 * 5 3 2 7 7 C 1.81399 * 102.99934 * 179.97438 * 6 5 3 8 8 N 1.46894 * 109.47154 * 186.31026 * 3 2 1 9 9 C 1.46895 * 111.00184 * 85.45948 * 8 3 2 10 10 C 1.53006 * 109.47347 * 176.03069 * 9 8 3 11 11 H 1.08998 * 109.46572 * 304.99486 * 10 9 8 12 12 O 1.42900 * 109.47055 * 64.99491 * 10 9 8 13 13 C 1.53003 * 109.47227 * 184.99849 * 10 9 8 14 14 O 1.42902 * 109.46864 * 174.99810 * 13 10 9 15 15 C 1.35672 * 116.99695 * 179.97438 * 14 13 10 16 16 C 1.39315 * 119.81990 * 359.72207 * 15 14 13 17 17 C 1.36435 * 120.18896 * 179.76216 * 16 15 14 18 18 C 1.40836 * 119.80661 * 0.51600 * 17 16 15 19 19 C 1.41221 * 120.17809 * 179.71996 * 18 17 16 20 20 H 1.08001 * 119.99907 * 159.10115 * 19 18 17 21 21 C 1.39883 * 119.99801 * 339.10378 * 19 18 17 22 22 N 1.30882 * 120.00262 * 330.75508 * 21 19 18 23 23 Si 1.86801 * 120.00024 * 150.75087 * 21 19 18 24 24 H 1.48507 * 109.47292 * 94.95375 * 23 21 19 25 25 H 1.48497 * 109.47555 * 214.95493 * 23 21 19 26 26 H 1.48504 * 109.47088 * 334.95563 * 23 21 19 27 27 C 1.40832 * 119.64634 * 359.73763 * 18 17 16 28 28 C 1.36441 * 119.80835 * 0.02562 * 27 18 17 29 29 H 1.08994 * 109.47637 * 292.73637 * 1 2 3 30 30 H 1.08997 * 109.46973 * 52.74322 * 1 2 3 31 31 H 1.09008 * 109.47102 * 172.73888 * 1 2 3 32 32 H 1.08998 * 109.47578 * 239.99467 * 2 1 3 33 33 H 1.08998 * 109.47007 * 119.99726 * 2 1 3 34 34 H 1.08993 * 109.47814 * 305.00411 * 5 3 2 35 35 H 1.09000 * 109.47316 * 65.00570 * 5 3 2 36 36 H 1.09002 * 109.47883 * 300.00332 * 7 6 5 37 37 H 1.09007 * 109.46993 * 60.00177 * 7 6 5 38 38 H 1.09006 * 109.47494 * 179.97438 * 7 6 5 39 39 H 1.00898 * 111.00028 * 321.49914 * 8 3 2 40 40 H 1.09003 * 109.47184 * 296.02678 * 9 8 3 41 41 H 1.09000 * 109.47709 * 56.02535 * 9 8 3 42 42 H 0.96700 * 114.00099 * 60.00537 * 12 10 9 43 43 H 1.08998 * 109.46746 * 294.99342 * 13 10 9 44 44 H 1.08995 * 109.47004 * 54.99318 * 13 10 9 45 45 H 1.08006 * 119.90453 * 0.02562 * 16 15 14 46 46 H 1.07998 * 120.10178 * 180.25463 * 17 16 15 47 47 H 0.97005 * 119.99766 * 180.02562 * 22 21 19 48 48 H 1.07995 * 120.09663 * 179.97438 * 27 18 17 49 49 H 1.07994 * 119.90803 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5874 1.9879 -0.8282 5 6 1.6635 2.1165 1.3209 6 16 2.1366 3.8668 1.2629 7 6 1.6180 4.4837 2.8880 8 7 3.5010 1.4452 -0.1522 9 6 3.8828 1.3878 -1.5695 10 6 5.4043 1.4921 -1.6926 11 1 5.7487 2.3936 -1.1859 12 8 6.0105 0.3464 -1.0910 13 6 5.7931 1.5578 -3.1709 14 8 7.2015 1.7721 -3.2839 15 6 7.7132 1.8549 -4.5377 16 6 6.8708 1.7255 -5.6397 17 6 7.3766 1.8123 -6.9039 18 6 8.7563 2.0226 -7.0930 19 6 9.2891 2.1078 -8.3980 20 1 10.2413 2.5904 -8.5621 21 6 8.5837 1.5671 -9.4781 22 7 7.7930 0.5402 -9.2953 23 14 8.7699 2.3106 -11.1816 24 1 9.8048 1.5612 -11.9385 25 1 7.4739 2.2292 -11.9018 26 1 9.1794 3.7328 -11.0589 27 6 9.6018 2.1470 -5.9736 28 6 9.0792 2.0626 -4.7161 29 1 -0.3634 0.3971 0.9477 30 1 -0.3633 0.6221 -0.8179 31 1 -0.3634 -1.0195 -0.1299 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 0.5877 2.0359 1.4763 35 1 2.1868 1.6257 2.1414 36 1 0.5432 4.3439 3.0038 37 1 2.1422 3.9337 3.6697 38 1 1.8575 5.5442 2.9675 39 1 3.9200 0.6877 0.3661 40 1 3.5476 0.4433 -1.9982 41 1 3.4174 2.2153 -2.1051 42 1 5.7487 -0.4935 -1.4925 43 1 5.5282 0.6195 -3.6583 44 1 5.2609 2.3793 -3.6504 45 1 5.8136 1.5602 -5.4929 46 1 6.7216 1.7159 -7.7572 47 1 7.3041 0.1651 -10.0444 48 1 10.6610 2.3079 -6.1102 49 1 9.7262 2.1573 -3.8566 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567686073.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:19 Heat of formation + Delta-G solvation = -83.660171 kcal Electronic energy + Delta-G solvation = -26298.905009 eV Core-core repulsion = 22544.660660 eV Total energy + Delta-G solvation = -3754.244348 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.166 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.16399 -38.34283 -37.03453 -35.94167 -33.38179 -33.10372 -30.59174 -29.71286 -29.55465 -29.13080 -28.52701 -25.50363 -24.56565 -23.74261 -21.94958 -21.12351 -20.84282 -20.29443 -17.37183 -17.25829 -16.72615 -16.49205 -16.26947 -15.88320 -15.21037 -15.11175 -14.82050 -14.63292 -14.28133 -13.99008 -13.92592 -13.82620 -13.76755 -13.40084 -13.09794 -12.85083 -12.54244 -12.50635 -12.35105 -12.18111 -12.03733 -11.85463 -11.80970 -11.40658 -11.35165 -11.19471 -11.09815 -11.01555 -10.77407 -10.56289 -10.13463 -9.96849 -9.94690 -9.80990 -9.34420 -8.91032 -8.66230 -7.74658 -7.63871 -7.09444 -6.81277 -4.20712 1.47105 2.43588 2.77359 2.97381 3.07148 3.10702 3.24605 3.51862 3.93097 4.21335 4.31101 4.43681 4.49503 4.54829 4.71027 4.78478 4.83367 4.86384 4.93660 5.02354 5.05355 5.16892 5.22700 5.26672 5.39364 5.40621 5.41337 5.50402 5.57656 5.65354 5.67265 5.71048 5.78647 6.11756 6.14365 6.30518 6.67844 6.74967 6.91779 7.05511 7.13513 7.25160 7.41951 7.56834 7.67188 7.90755 7.99987 8.16210 8.45707 8.65796 8.88361 9.01083 10.11851 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017236 B = 0.001839 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.158436 B =15222.128509 C =15581.591862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.150 4.150 3 C 0.102 3.898 4 H 0.087 0.913 5 C -0.077 4.077 6 S -0.228 6.228 7 C -0.133 4.133 8 N -0.670 5.670 9 C 0.034 3.966 10 C 0.114 3.886 11 H 0.116 0.884 12 O -0.551 6.551 13 C 0.040 3.960 14 O -0.318 6.318 15 C -0.017 4.017 16 C -0.168 4.168 17 C -0.148 4.148 18 C 0.091 3.909 19 C -0.468 4.468 20 H 0.079 0.921 21 C 0.084 3.916 22 N -0.783 5.783 23 Si 0.897 3.103 24 H -0.270 1.270 25 H -0.275 1.275 26 H -0.259 1.259 27 C -0.201 4.201 28 C -0.106 4.106 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.348 0.652 40 H 0.035 0.965 41 H 0.084 0.916 42 H 0.368 0.632 43 H 0.050 0.950 44 H 0.058 0.942 45 H 0.092 0.908 46 H 0.111 0.889 47 H 0.281 0.719 48 H 0.100 0.900 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.740 -0.377 18.314 24.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.191 4.191 3 C -0.009 4.009 4 H 0.105 0.895 5 C -0.226 4.226 6 S -0.003 6.003 7 C -0.302 4.302 8 N -0.300 5.300 9 C -0.096 4.096 10 C 0.055 3.945 11 H 0.134 0.866 12 O -0.355 6.355 13 C -0.037 4.037 14 O -0.233 6.233 15 C -0.061 4.061 16 C -0.187 4.187 17 C -0.167 4.167 18 C 0.089 3.911 19 C -0.497 4.497 20 H 0.097 0.903 21 C -0.136 4.136 22 N -0.407 5.407 23 Si 0.721 3.279 24 H -0.196 1.196 25 H -0.200 1.200 26 H -0.182 1.182 27 C -0.221 4.221 28 C -0.125 4.125 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.117 0.883 39 H 0.168 0.832 40 H 0.053 0.947 41 H 0.102 0.898 42 H 0.214 0.786 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.110 0.890 46 H 0.129 0.871 47 H 0.091 0.909 48 H 0.118 0.882 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.954 1.198 17.984 24.070 hybrid contribution -1.373 -1.855 -0.639 2.395 sum -17.327 -0.657 17.345 24.526 Atomic orbital electron populations 1.21774 0.95147 1.01986 1.02003 1.22257 0.97127 0.97092 1.02632 1.21366 0.88764 0.94346 0.96422 0.89496 1.23507 1.02915 0.94900 1.01295 1.87254 1.82357 1.09065 1.21577 1.23417 1.03697 1.05047 0.98009 1.60385 1.07102 1.52383 1.10171 1.22548 0.96246 1.01098 0.89659 1.21951 0.90115 0.90668 0.91807 0.86639 1.86648 1.71909 1.16022 1.60904 1.23081 0.83578 1.00618 0.96463 1.85864 1.20962 1.89640 1.26873 1.18539 0.93130 1.12488 0.81896 1.20540 0.97149 1.07400 0.93591 1.20735 0.95554 1.05688 0.94728 1.17554 0.91266 0.89671 0.92646 1.19425 1.05899 1.33365 0.91008 0.90255 1.25892 0.93491 0.92697 1.01481 1.69935 1.21526 1.15113 1.34146 0.86489 0.78619 0.81248 0.81538 1.19574 1.20038 1.18245 1.20536 0.98009 1.11966 0.91585 1.19624 0.91492 1.04616 0.96769 0.92565 0.92374 0.92535 0.91358 0.91430 0.89971 0.90236 0.91088 0.90765 0.88269 0.83210 0.94711 0.89770 0.78556 0.93140 0.92403 0.89016 0.87072 0.90866 0.88233 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.52 37.15 0.35 -0.47 16 2 C -0.15 -0.92 5.38 -26.73 -0.14 -1.07 16 3 C 0.10 0.78 2.04 -67.72 -0.14 0.64 16 4 H 0.09 0.74 7.71 -51.93 -0.40 0.34 16 5 C -0.08 -0.57 5.48 37.16 0.20 -0.36 16 6 S -0.23 -2.20 22.12 -107.50 -2.38 -4.57 16 7 C -0.13 -0.88 10.76 101.05 1.09 0.20 16 8 N -0.67 -6.14 5.94 -106.73 -0.63 -6.77 16 9 C 0.03 0.34 5.17 -3.82 -0.02 0.32 16 10 C 0.11 1.47 3.49 -26.73 -0.09 1.38 16 11 H 0.12 1.68 8.14 -51.93 -0.42 1.26 16 12 O -0.55 -7.28 12.89 -40.08 -0.52 -7.80 16 13 C 0.04 0.63 4.37 37.16 0.16 0.80 16 14 O -0.32 -6.67 10.09 -23.57 -0.24 -6.90 16 15 C -0.02 -0.41 6.71 -38.78 -0.26 -0.67 16 16 C -0.17 -3.98 8.96 -39.83 -0.36 -4.34 16 17 C -0.15 -3.86 8.72 -39.25 -0.34 -4.20 16 18 C 0.09 2.46 5.59 -106.80 -0.60 1.86 16 19 C -0.47 -12.49 8.97 -37.83 -0.34 -12.83 16 20 H 0.08 2.04 7.99 -52.49 -0.42 1.62 16 21 C 0.08 2.10 4.88 -17.34 -0.08 2.02 16 22 N -0.78 -20.18 11.47 55.54 0.64 -19.54 16 23 Si 0.90 18.51 29.65 -169.99 -5.04 13.47 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 26 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 27 C -0.20 -5.07 9.74 -39.25 -0.38 -5.45 16 28 C -0.11 -2.55 9.92 -39.83 -0.40 -2.94 16 29 H 0.06 0.27 6.85 -51.93 -0.36 -0.08 16 30 H 0.06 0.33 8.12 -51.93 -0.42 -0.09 16 31 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 32 H 0.07 0.45 7.43 -51.93 -0.39 0.07 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.50 6.56 -51.93 -0.34 0.16 16 35 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 37 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 38 H 0.10 0.61 8.14 -51.92 -0.42 0.18 16 39 H 0.35 3.12 8.13 -39.29 -0.32 2.80 16 40 H 0.03 0.30 7.46 -51.93 -0.39 -0.08 16 41 H 0.08 0.86 7.96 -51.93 -0.41 0.44 16 42 H 0.37 3.65 9.05 45.56 0.41 4.06 16 43 H 0.05 0.77 7.63 -51.93 -0.40 0.38 16 44 H 0.06 0.89 7.66 -51.93 -0.40 0.50 16 45 H 0.09 1.92 6.27 -52.48 -0.33 1.59 16 46 H 0.11 2.95 6.33 -52.49 -0.33 2.62 16 47 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 48 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16 49 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 409.72 15.07 6.17 6.17 Total: -1.00 -29.93 409.72 -10.77 -40.69 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -7.43 Total: 10.38 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: -1.35 Total: -25.12 kcal Atomic # 7 Polarization: -26.32 SS G_CDS: 0.00 Total: -26.32 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.75 Total: -14.70 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.04 Total: 13.47 kcal Atomic # 16 Polarization: -2.20 SS G_CDS: -2.38 Total: -4.57 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -29.93 -10.77 -40.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567686073.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.968 kcal (2) G-P(sol) polarization free energy of solvation -29.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds