Wall clock time and date at job start Tue Mar 31 2020 22:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47319 * 2 1 4 4 H 1.09003 * 109.46887 * 306.30794 * 3 2 1 5 5 C 1.52996 * 109.46963 * 66.30501 * 3 2 1 6 6 S 1.81404 * 109.46867 * 185.00081 * 5 3 2 7 7 C 1.81399 * 102.99934 * 179.97438 * 6 5 3 8 8 N 1.46894 * 109.47154 * 186.31026 * 3 2 1 9 9 C 1.46895 * 111.00184 * 85.45948 * 8 3 2 10 10 C 1.53006 * 109.47347 * 176.03069 * 9 8 3 11 11 H 1.08998 * 109.46572 * 304.99486 * 10 9 8 12 12 O 1.42900 * 109.47055 * 64.99491 * 10 9 8 13 13 C 1.53003 * 109.47227 * 184.99849 * 10 9 8 14 14 O 1.42902 * 109.46864 * 174.99810 * 13 10 9 15 15 C 1.35672 * 116.99695 * 179.97438 * 14 13 10 16 16 C 1.39315 * 119.81990 * 359.72207 * 15 14 13 17 17 C 1.36435 * 120.18896 * 179.76216 * 16 15 14 18 18 C 1.40836 * 119.80661 * 0.51600 * 17 16 15 19 19 C 1.41221 * 120.17809 * 179.71996 * 18 17 16 20 20 H 1.08001 * 119.99907 * 159.10115 * 19 18 17 21 21 C 1.39883 * 119.99801 * 339.10378 * 19 18 17 22 22 N 1.30882 * 120.00262 * 330.75508 * 21 19 18 23 23 Si 1.86801 * 120.00024 * 150.75087 * 21 19 18 24 24 H 1.48507 * 109.47292 * 94.95375 * 23 21 19 25 25 H 1.48497 * 109.47555 * 214.95493 * 23 21 19 26 26 H 1.48504 * 109.47088 * 334.95563 * 23 21 19 27 27 C 1.40832 * 119.64634 * 359.73763 * 18 17 16 28 28 C 1.36441 * 119.80835 * 0.02562 * 27 18 17 29 29 H 1.08994 * 109.47637 * 292.73637 * 1 2 3 30 30 H 1.08997 * 109.46973 * 52.74322 * 1 2 3 31 31 H 1.09008 * 109.47102 * 172.73888 * 1 2 3 32 32 H 1.08998 * 109.47578 * 239.99467 * 2 1 3 33 33 H 1.08998 * 109.47007 * 119.99726 * 2 1 3 34 34 H 1.08993 * 109.47814 * 305.00411 * 5 3 2 35 35 H 1.09000 * 109.47316 * 65.00570 * 5 3 2 36 36 H 1.09002 * 109.47883 * 300.00332 * 7 6 5 37 37 H 1.09007 * 109.46993 * 60.00177 * 7 6 5 38 38 H 1.09006 * 109.47494 * 179.97438 * 7 6 5 39 39 H 1.00898 * 111.00028 * 321.49914 * 8 3 2 40 40 H 1.09003 * 109.47184 * 296.02678 * 9 8 3 41 41 H 1.09000 * 109.47709 * 56.02535 * 9 8 3 42 42 H 0.96700 * 114.00099 * 60.00537 * 12 10 9 43 43 H 1.08998 * 109.46746 * 294.99342 * 13 10 9 44 44 H 1.08995 * 109.47004 * 54.99318 * 13 10 9 45 45 H 1.08006 * 119.90453 * 0.02562 * 16 15 14 46 46 H 1.07998 * 120.10178 * 180.25463 * 17 16 15 47 47 H 0.97005 * 119.99766 * 180.02562 * 22 21 19 48 48 H 1.07995 * 120.09663 * 179.97438 * 27 18 17 49 49 H 1.07994 * 119.90803 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5874 1.9879 -0.8282 5 6 1.6635 2.1165 1.3209 6 16 2.1366 3.8668 1.2629 7 6 1.6180 4.4837 2.8880 8 7 3.5010 1.4452 -0.1522 9 6 3.8828 1.3878 -1.5695 10 6 5.4043 1.4921 -1.6926 11 1 5.7487 2.3936 -1.1859 12 8 6.0105 0.3464 -1.0910 13 6 5.7931 1.5578 -3.1709 14 8 7.2015 1.7721 -3.2839 15 6 7.7132 1.8549 -4.5377 16 6 6.8708 1.7255 -5.6397 17 6 7.3766 1.8123 -6.9039 18 6 8.7563 2.0226 -7.0930 19 6 9.2891 2.1078 -8.3980 20 1 10.2413 2.5904 -8.5621 21 6 8.5837 1.5671 -9.4781 22 7 7.7930 0.5402 -9.2953 23 14 8.7699 2.3106 -11.1816 24 1 9.8048 1.5612 -11.9385 25 1 7.4739 2.2292 -11.9018 26 1 9.1794 3.7328 -11.0589 27 6 9.6018 2.1470 -5.9736 28 6 9.0792 2.0626 -4.7161 29 1 -0.3634 0.3971 0.9477 30 1 -0.3633 0.6221 -0.8179 31 1 -0.3634 -1.0195 -0.1299 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 0.5877 2.0359 1.4763 35 1 2.1868 1.6257 2.1414 36 1 0.5432 4.3439 3.0038 37 1 2.1422 3.9337 3.6697 38 1 1.8575 5.5442 2.9675 39 1 3.9200 0.6877 0.3661 40 1 3.5476 0.4433 -1.9982 41 1 3.4174 2.2153 -2.1051 42 1 5.7487 -0.4935 -1.4925 43 1 5.5282 0.6195 -3.6583 44 1 5.2609 2.3793 -3.6504 45 1 5.8136 1.5602 -5.4929 46 1 6.7216 1.7159 -7.7572 47 1 7.3041 0.1651 -10.0444 48 1 10.6610 2.3079 -6.1102 49 1 9.7262 2.1573 -3.8566 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567686073.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:18 Heat of formation + Delta-G solvation = -102.178710 kcal Electronic energy + Delta-G solvation = -26299.708033 eV Core-core repulsion = 22544.660660 eV Total energy + Delta-G solvation = -3755.047373 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.166 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.65605 -39.42664 -38.28355 -37.34992 -35.25773 -33.83140 -31.73617 -31.47639 -30.84779 -30.06870 -29.40107 -26.92892 -25.91788 -24.50294 -23.30748 -22.57703 -22.07795 -21.54948 -19.28643 -18.71372 -17.87745 -17.50758 -17.36067 -16.91136 -16.56321 -16.07343 -15.94362 -15.73995 -15.47651 -15.24180 -15.02008 -14.73453 -14.64841 -14.28447 -14.18513 -14.16589 -13.90383 -13.71978 -13.48093 -13.30265 -13.12044 -13.02638 -12.80774 -12.74591 -12.67680 -12.44805 -12.28003 -11.95774 -11.87927 -11.75762 -11.70469 -11.58446 -11.23388 -11.01459 -10.78441 -10.72636 -9.57687 -9.34569 -9.00963 -8.69022 -8.47439 -6.18779 0.87083 0.94296 1.02853 1.38687 1.47668 1.57312 1.84586 2.21005 2.39084 2.64770 3.20969 3.46574 3.68797 3.75094 3.91094 3.97096 4.01972 4.10668 4.16045 4.27117 4.29229 4.35341 4.37004 4.37520 4.38288 4.47156 4.51050 4.61830 4.72289 4.75376 4.86997 4.88491 4.91508 5.00162 5.07943 5.11355 5.14151 5.19950 5.33016 5.35349 5.51299 5.65247 5.95644 5.99065 6.03784 6.23179 6.44821 6.53963 6.77170 6.81967 6.92129 7.10934 8.27131 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017236 B = 0.001839 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.158436 B =15222.128509 C =15581.591862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.143 4.143 3 C 0.106 3.894 4 H 0.077 0.923 5 C -0.061 4.061 6 S -0.300 6.300 7 C -0.118 4.118 8 N -0.678 5.678 9 C 0.047 3.953 10 C 0.128 3.872 11 H 0.097 0.903 12 O -0.564 6.564 13 C 0.032 3.968 14 O -0.329 6.329 15 C -0.011 4.011 16 C -0.168 4.168 17 C -0.168 4.168 18 C 0.059 3.941 19 C -0.505 4.505 20 H 0.077 0.923 21 C 0.045 3.955 22 N -0.813 5.813 23 Si 0.974 3.026 24 H -0.261 1.261 25 H -0.264 1.264 26 H -0.260 1.260 27 C -0.213 4.213 28 C -0.117 4.117 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.350 0.650 40 H 0.051 0.949 41 H 0.081 0.919 42 H 0.383 0.617 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.118 0.882 46 H 0.100 0.900 47 H 0.291 0.709 48 H 0.108 0.892 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.272 -0.849 18.991 26.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.184 4.184 3 C -0.005 4.005 4 H 0.095 0.905 5 C -0.209 4.209 6 S -0.075 6.075 7 C -0.286 4.286 8 N -0.309 5.309 9 C -0.083 4.083 10 C 0.068 3.932 11 H 0.114 0.886 12 O -0.370 6.370 13 C -0.044 4.044 14 O -0.245 6.245 15 C -0.055 4.055 16 C -0.187 4.187 17 C -0.188 4.188 18 C 0.057 3.943 19 C -0.534 4.534 20 H 0.095 0.905 21 C -0.172 4.172 22 N -0.438 5.438 23 Si 0.794 3.206 24 H -0.185 1.185 25 H -0.189 1.189 26 H -0.184 1.184 27 C -0.232 4.232 28 C -0.136 4.136 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.120 0.880 39 H 0.170 0.830 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.232 0.768 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.136 0.864 46 H 0.118 0.882 47 H 0.101 0.899 48 H 0.126 0.874 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.501 0.708 18.684 25.610 hybrid contribution -0.949 -1.750 -0.668 2.099 sum -18.450 -1.042 18.016 25.808 Atomic orbital electron populations 1.21770 0.94514 1.02258 1.02288 1.22178 0.97582 0.95791 1.02807 1.21352 0.87658 0.95219 0.96267 0.90481 1.23480 1.03771 0.92525 1.01160 1.87475 1.83250 1.11997 1.24744 1.23405 1.04555 1.05073 0.95598 1.60336 1.08281 1.52725 1.09606 1.22351 0.93696 1.01833 0.90406 1.21763 0.91972 0.90106 0.89320 0.88552 1.86613 1.72390 1.16862 1.61168 1.23446 0.80892 1.01226 0.98869 1.85861 1.23994 1.89381 1.25290 1.18661 0.93143 1.10771 0.82900 1.20757 0.98614 1.06531 0.92795 1.20733 0.95318 1.07349 0.95371 1.17920 0.92098 0.90744 0.93548 1.19664 1.06760 1.34925 0.92015 0.90507 1.26728 0.92775 0.92455 1.05280 1.69950 1.22100 1.15867 1.35909 0.85335 0.79110 0.79963 0.76187 1.18542 1.18870 1.18381 1.20725 0.98478 1.12171 0.91845 1.19899 0.92370 1.04324 0.96981 0.91822 0.92745 0.92117 0.91650 0.90773 0.88416 0.89866 0.89659 0.90078 0.87956 0.82997 0.93051 0.90063 0.76796 0.92142 0.91871 0.86407 0.88226 0.89877 0.87382 0.86602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.52 71.98 0.69 -0.63 16 2 C -0.14 -1.45 5.38 30.59 0.16 -1.28 16 3 C 0.11 1.44 2.04 44.92 0.09 1.53 16 4 H 0.08 1.23 7.71 -2.39 -0.02 1.21 16 5 C -0.06 -0.79 5.48 71.98 0.39 -0.40 16 6 S -0.30 -5.57 22.12 -56.49 -1.25 -6.82 16 7 C -0.12 -1.39 10.76 113.37 1.22 -0.17 16 8 N -0.68 -11.52 5.94 -491.58 -2.92 -14.44 16 9 C 0.05 0.86 5.17 86.31 0.45 1.30 16 10 C 0.13 3.16 3.49 30.60 0.11 3.27 16 11 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 12 O -0.56 -14.07 12.89 -144.35 -1.86 -15.93 16 13 C 0.03 0.98 4.37 71.98 0.31 1.29 16 14 O -0.33 -13.52 10.09 -85.26 -0.86 -14.38 16 15 C -0.01 -0.52 6.71 22.79 0.15 -0.36 16 16 C -0.17 -7.95 8.96 22.11 0.20 -7.75 16 17 C -0.17 -8.96 8.72 22.48 0.20 -8.77 16 18 C 0.06 3.27 5.59 -21.28 -0.12 3.16 16 19 C -0.51 -27.62 8.97 23.40 0.21 -27.41 16 20 H 0.08 4.07 7.99 -2.91 -0.02 4.04 16 21 C 0.04 2.26 4.88 85.23 0.42 2.67 16 22 N -0.81 -42.36 11.47 21.82 0.25 -42.11 16 23 Si 0.97 37.97 29.65 68.60 2.03 40.01 16 24 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 25 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 26 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 27 C -0.21 -10.90 9.74 22.48 0.22 -10.68 16 28 C -0.12 -5.61 9.92 22.11 0.22 -5.39 16 29 H 0.06 0.46 6.85 -2.39 -0.02 0.44 16 30 H 0.05 0.52 8.12 -2.39 -0.02 0.50 16 31 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.06 0.72 7.43 -2.39 -0.02 0.70 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.10 0.97 6.56 -2.39 -0.02 0.96 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.35 5.70 8.13 -89.70 -0.73 4.97 16 40 H 0.05 0.78 7.46 -2.39 -0.02 0.76 16 41 H 0.08 1.56 7.96 -2.39 -0.02 1.54 16 42 H 0.38 6.84 9.05 -74.06 -0.67 6.17 16 43 H 0.06 1.74 7.63 -2.39 -0.02 1.72 16 44 H 0.06 1.87 7.66 -2.39 -0.02 1.85 16 45 H 0.12 4.80 6.27 -2.91 -0.02 4.78 16 46 H 0.10 5.44 6.33 -2.91 -0.02 5.42 16 47 H 0.29 13.51 8.30 -92.70 -0.77 12.74 16 48 H 0.11 5.16 8.06 -2.91 -0.02 5.14 16 49 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 Total: -1.00 -65.10 409.72 -0.14 -65.24 By element: Atomic # 1 Polarization: 38.52 SS G_CDS: -0.45 Total: 38.07 kcal Atomic # 6 Polarization: -54.54 SS G_CDS: 4.92 Total: -49.62 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -2.67 Total: -56.56 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -2.72 Total: -30.32 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 40.01 kcal Atomic # 16 Polarization: -5.57 SS G_CDS: -1.25 Total: -6.82 kcal Total: -65.10 -0.14 -65.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567686073.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.938 kcal (2) G-P(sol) polarization free energy of solvation -65.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds