Wall clock time and date at job start Tue Mar 31 2020 22:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50704 * 120.00559 * 2 1 4 4 N 1.46504 * 109.46887 * 125.00186 * 3 2 1 5 5 C 1.46498 * 120.00212 * 264.22479 * 4 3 2 6 6 C 1.50703 * 109.46897 * 270.00397 * 5 4 3 7 7 H 1.07995 * 120.00359 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00069 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99619 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00241 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46940 * 89.99787 * 10 8 6 12 12 H 1.48490 * 109.47074 * 209.99953 * 10 8 6 13 13 H 1.48495 * 109.46952 * 330.00034 * 10 8 6 14 14 C 1.34774 * 119.99893 * 84.22714 * 4 3 2 15 15 O 1.21281 * 120.00366 * 184.95809 * 14 4 3 16 16 C 1.50706 * 119.99802 * 4.95590 * 14 4 3 17 17 H 1.08997 * 109.88189 * 357.03530 * 16 14 4 18 18 C 1.54314 * 110.02504 * 118.15878 * 16 14 4 19 19 C 1.55135 * 103.02035 * 141.76287 * 18 16 14 20 20 C 1.54899 * 101.65357 * 324.34610 * 19 18 16 21 21 N 1.47449 * 109.88789 * 236.00697 * 16 14 4 22 22 C 1.39195 * 110.99921 * 3.68837 * 21 16 14 23 23 C 1.39178 * 119.92132 * 89.15824 * 22 21 16 24 24 C 1.37645 * 120.07397 * 179.97438 * 23 22 21 25 25 C 1.39810 * 119.92411 * 0.02562 * 24 23 22 26 26 C 1.43203 * 120.07239 * 180.02562 * 25 24 23 27 27 N 7.43362 * 110.02411 * 118.45330 * 2 1 3 28 28 C 1.39803 * 119.85148 * 0.28256 * 25 24 23 29 29 C 1.37656 * 119.92087 * 359.43826 * 28 25 24 30 30 H 1.07996 * 120.00469 * 179.97438 * 1 2 3 31 31 H 1.08006 * 120.00161 * 359.97438 * 1 2 3 32 32 H 1.08006 * 120.00161 * 180.02562 * 2 1 3 33 33 H 1.09005 * 109.46625 * 5.01152 * 3 2 1 34 34 H 1.08994 * 109.47386 * 245.00689 * 3 2 1 35 35 H 1.09003 * 109.47435 * 29.99731 * 5 4 3 36 36 H 1.08992 * 109.47659 * 150.00085 * 5 4 3 37 37 H 0.97003 * 119.99977 * 179.97438 * 9 8 6 38 38 H 1.09003 * 110.70552 * 260.14825 * 18 16 14 39 39 H 1.09005 * 110.70353 * 23.20105 * 18 16 14 40 40 H 1.09004 * 110.98989 * 82.44015 * 19 18 16 41 41 H 1.09000 * 110.99065 * 206.21673 * 19 18 16 42 42 H 1.09003 * 110.37334 * 278.23936 * 20 19 18 43 43 H 1.09002 * 110.37306 * 155.90131 * 20 19 18 44 44 H 1.07996 * 119.96500 * 0.02562 * 23 22 21 45 45 H 1.08004 * 120.04074 * 180.02562 * 24 23 22 46 46 H 1.07998 * 120.04173 * 179.69614 * 28 25 24 47 47 H 1.07994 * 119.96390 * 180.29508 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3317 1.1314 5 6 2.6027 1.9785 2.3864 6 6 3.0024 3.4311 2.3486 7 1 3.4986 3.8322 1.4773 8 6 2.7356 4.2478 3.4270 9 7 2.1319 3.7592 4.4883 10 14 3.2317 6.0481 3.3806 11 1 2.1207 6.8531 2.8124 12 1 3.5275 6.5157 4.7586 13 1 4.4412 6.2065 2.5337 14 6 4.2096 0.7612 1.0178 15 8 4.9448 0.7035 1.9806 16 6 4.6554 0.1948 -0.3057 17 1 3.8528 0.2868 -1.0375 18 6 5.9094 0.9426 -0.8050 19 6 6.7605 -0.1878 -1.4410 20 6 6.4546 -1.3780 -0.4980 21 7 5.0274 -1.2229 -0.1449 22 6 4.7849 -1.6579 1.1549 23 6 3.5421 -2.1876 1.4893 24 6 3.2991 -2.6191 2.7736 25 6 4.3024 -2.5244 3.7427 26 6 4.0532 -2.9729 5.0797 27 7 3.8553 -3.3276 6.1406 28 6 5.5475 -1.9858 3.4050 29 6 5.7856 -1.5614 2.1173 30 1 -0.5401 -0.9352 -0.0004 31 1 -0.5401 0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0898 34 1 2.6213 1.4026 -0.9314 35 1 1.5228 1.9021 2.5134 36 1 3.1023 1.4857 3.2203 37 1 1.9445 4.3336 5.2472 38 1 5.6408 1.6896 -1.5521 39 1 6.4391 1.4056 0.0276 40 1 6.4301 -0.4004 -2.4578 41 1 7.8208 0.0638 -1.4218 42 1 7.0750 -1.3225 0.3966 43 1 6.6169 -2.3236 -1.0153 44 1 2.7677 -2.2609 0.7401 45 1 2.3346 -3.0305 3.0324 46 1 6.3230 -1.9066 4.1524 47 1 6.7488 -1.1497 1.8546 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590409839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:51 Heat of formation + Delta-G solvation = 79.783091 kcal Electronic energy + Delta-G solvation = -30652.157692 eV Core-core repulsion = 26801.849575 eV Total energy + Delta-G solvation = -3850.308117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.15918 -38.65433 -37.60506 -36.06371 -35.67404 -33.24783 -32.67150 -32.08191 -31.12448 -29.71233 -28.79098 -27.41741 -25.49412 -23.95857 -23.12852 -22.86585 -21.17192 -21.00142 -19.92840 -18.86914 -18.44967 -17.17694 -16.83394 -16.40635 -15.50479 -15.46957 -15.19389 -14.79482 -14.50795 -14.40825 -14.20691 -13.98584 -13.76212 -13.52019 -13.20267 -12.99078 -12.80501 -12.75770 -12.54254 -12.25782 -11.91898 -11.86883 -11.73654 -11.66839 -11.46731 -11.30179 -11.22706 -11.19397 -10.94360 -10.83800 -10.72229 -10.60872 -10.22802 -9.67865 -9.34550 -9.22079 -8.90197 -8.73915 -8.46559 -8.01954 -7.56642 -6.07198 -4.12715 0.90305 1.57589 2.43074 2.84495 3.06532 3.13202 3.26495 3.33902 3.36885 3.84312 3.93114 4.09850 4.14944 4.40547 4.56160 4.60536 4.88661 4.92765 5.00026 5.05180 5.20802 5.26886 5.28112 5.32618 5.33467 5.48697 5.59682 5.64508 5.68683 5.70290 5.76342 5.82992 5.89841 6.00233 6.08283 6.14425 6.19654 6.23645 6.41251 6.48529 6.67675 6.79294 6.82889 6.89536 7.04629 7.32427 7.43459 7.50403 7.66602 7.88579 8.19739 8.34682 8.84124 9.00389 9.52566 11.00545 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008232 B = 0.005042 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3400.725361 B = 5552.373224 C = 6626.232290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.170 4.170 3 C 0.134 3.866 4 N -0.584 5.584 5 C 0.250 3.750 6 C -0.528 4.528 7 H 0.056 0.944 8 C 0.063 3.937 9 N -0.892 5.892 10 Si 0.896 3.104 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.496 3.504 15 O -0.526 6.526 16 C 0.049 3.951 17 H 0.107 0.893 18 C -0.128 4.128 19 C -0.125 4.125 20 C 0.029 3.971 21 N -0.472 5.472 22 C 0.118 3.882 23 C -0.112 4.112 24 C -0.062 4.062 25 C -0.041 4.041 26 C 0.264 3.736 27 N -0.433 5.433 28 C -0.056 4.056 29 C -0.101 4.101 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.030 0.970 36 H 0.044 0.956 37 H 0.263 0.737 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.126 0.874 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.807 -11.261 -14.757 19.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.189 4.189 3 C 0.010 3.990 4 N -0.314 5.314 5 C 0.131 3.869 6 C -0.567 4.567 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.531 5.531 10 Si 0.723 3.277 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.281 3.719 15 O -0.403 6.403 16 C -0.060 4.060 17 H 0.124 0.876 18 C -0.167 4.167 19 C -0.163 4.163 20 C -0.098 4.098 21 N -0.193 5.193 22 C 0.022 3.978 23 C -0.131 4.131 24 C -0.083 4.083 25 C -0.045 4.045 26 C -0.051 4.051 27 N -0.109 5.109 28 C -0.078 4.078 29 C -0.120 4.120 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.127 0.873 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.149 0.851 45 H 0.147 0.853 46 H 0.144 0.856 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.503 -12.040 -12.733 18.093 hybrid contribution 0.518 1.839 0.191 1.920 sum 5.021 -10.202 -12.542 16.929 Atomic orbital electron populations 1.23807 0.95845 1.01727 1.00684 1.23570 0.96421 0.99174 0.99777 1.20630 0.93021 0.95544 0.89813 1.48200 1.13320 1.54317 1.15588 1.19252 0.95709 0.91894 0.80070 1.21410 1.39020 0.94253 1.01988 0.92548 1.24924 0.95094 0.98775 0.95178 1.69936 1.41500 1.36010 1.05608 0.86538 0.78851 0.84897 0.77379 1.20621 1.21126 1.19940 1.20397 0.82540 0.79388 0.89580 1.90691 1.53200 1.56923 1.39481 1.22832 0.99698 0.86393 0.97069 0.87557 1.22746 0.94764 0.97913 1.01285 1.22682 1.00185 0.94230 0.99203 1.23401 0.87401 0.99653 0.99307 1.61348 1.20380 1.16630 1.20905 1.18985 0.94243 0.95938 0.88643 1.20720 0.96324 0.99947 0.96142 1.20907 0.97634 0.97828 0.91969 1.15987 0.96161 1.06058 0.86249 1.25783 0.93367 0.93066 0.92838 1.81194 1.07983 1.10279 1.11436 1.20859 0.95032 0.95471 0.96389 1.21245 1.00565 0.97734 0.92489 0.88757 0.88419 0.87255 0.89323 0.90859 0.95204 0.93794 0.92706 0.90065 0.89918 0.90430 0.90350 0.91395 0.89488 0.85086 0.85266 0.85559 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 14.32 29.02 0.42 -1.79 16 2 C -0.17 -2.24 9.66 -36.02 -0.35 -2.59 16 3 C 0.13 2.03 5.48 -5.19 -0.03 2.00 16 4 N -0.58 -11.36 2.46 -176.43 -0.43 -11.79 16 5 C 0.25 6.26 5.17 -5.19 -0.03 6.23 16 6 C -0.53 -14.40 9.39 -34.44 -0.32 -14.72 16 7 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 10 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 14 C 0.50 9.10 4.95 -10.98 -0.05 9.05 16 15 O -0.53 -11.39 12.48 5.56 0.07 -11.32 16 16 C 0.05 0.66 3.43 -67.87 -0.23 0.43 16 17 H 0.11 1.31 5.38 -51.93 -0.28 1.03 16 18 C -0.13 -1.53 6.45 -24.91 -0.16 -1.69 16 19 C -0.12 -1.12 7.08 -24.60 -0.17 -1.29 16 20 C 0.03 0.29 6.50 -2.31 -0.01 0.27 16 21 N -0.47 -5.84 5.16 -161.74 -0.83 -6.68 16 22 C 0.12 1.64 3.25 -83.82 -0.27 1.37 16 23 C -0.11 -1.51 9.23 -39.45 -0.36 -1.88 16 24 C -0.06 -0.85 9.75 -39.21 -0.38 -1.23 16 25 C -0.04 -0.60 5.74 -106.80 -0.61 -1.22 16 26 C 0.26 4.24 15.33 -22.47 -0.34 3.90 16 27 N -0.43 -7.69 18.54 41.84 0.78 -6.91 16 28 C -0.06 -0.81 9.75 -39.21 -0.38 -1.19 16 29 C -0.10 -1.43 6.19 -39.45 -0.24 -1.68 16 30 H 0.09 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.10 1.18 7.84 -52.48 -0.41 0.76 16 32 H 0.11 1.37 5.49 -52.48 -0.29 1.08 16 33 H 0.09 1.42 7.68 -51.93 -0.40 1.02 16 34 H 0.07 0.93 6.11 -51.93 -0.32 0.61 16 35 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 36 H 0.04 1.27 7.36 -51.93 -0.38 0.89 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.08 1.19 7.62 -51.93 -0.40 0.79 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.70 4.94 -51.93 -0.26 0.45 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.13 1.57 5.90 -52.49 -0.31 1.26 16 45 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 46 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 47 H 0.13 1.76 5.76 -52.49 -0.30 1.46 16 LS Contribution 384.92 15.07 5.80 5.80 Total: -1.00 -32.44 384.92 -8.82 -41.26 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -6.27 Total: 3.11 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -3.65 Total: -4.37 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: 0.24 Total: -50.93 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.07 Total: -11.32 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.44 -8.82 -41.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590409839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.046 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds