Wall clock time and date at job start Tue Mar 31 2020 22:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50704 * 120.00559 * 2 1 4 4 N 1.46504 * 109.46887 * 125.00186 * 3 2 1 5 5 C 1.46498 * 120.00212 * 264.22479 * 4 3 2 6 6 C 1.50703 * 109.46897 * 270.00397 * 5 4 3 7 7 H 1.07995 * 120.00359 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00069 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99619 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00241 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46940 * 89.99787 * 10 8 6 12 12 H 1.48490 * 109.47074 * 209.99953 * 10 8 6 13 13 H 1.48495 * 109.46952 * 330.00034 * 10 8 6 14 14 C 1.34774 * 119.99893 * 84.22714 * 4 3 2 15 15 O 1.21281 * 120.00366 * 184.95809 * 14 4 3 16 16 C 1.50706 * 119.99802 * 4.95590 * 14 4 3 17 17 H 1.08997 * 109.88189 * 357.03530 * 16 14 4 18 18 C 1.54314 * 110.02504 * 118.15878 * 16 14 4 19 19 C 1.55135 * 103.02035 * 141.76287 * 18 16 14 20 20 C 1.54899 * 101.65357 * 324.34610 * 19 18 16 21 21 N 1.47449 * 109.88789 * 236.00697 * 16 14 4 22 22 C 1.39195 * 110.99921 * 3.68837 * 21 16 14 23 23 C 1.39178 * 119.92132 * 89.15824 * 22 21 16 24 24 C 1.37645 * 120.07397 * 179.97438 * 23 22 21 25 25 C 1.39810 * 119.92411 * 0.02562 * 24 23 22 26 26 C 1.43203 * 120.07239 * 180.02562 * 25 24 23 27 27 N 7.43362 * 110.02411 * 118.45330 * 2 1 3 28 28 C 1.39803 * 119.85148 * 0.28256 * 25 24 23 29 29 C 1.37656 * 119.92087 * 359.43826 * 28 25 24 30 30 H 1.07996 * 120.00469 * 179.97438 * 1 2 3 31 31 H 1.08006 * 120.00161 * 359.97438 * 1 2 3 32 32 H 1.08006 * 120.00161 * 180.02562 * 2 1 3 33 33 H 1.09005 * 109.46625 * 5.01152 * 3 2 1 34 34 H 1.08994 * 109.47386 * 245.00689 * 3 2 1 35 35 H 1.09003 * 109.47435 * 29.99731 * 5 4 3 36 36 H 1.08992 * 109.47659 * 150.00085 * 5 4 3 37 37 H 0.97003 * 119.99977 * 179.97438 * 9 8 6 38 38 H 1.09003 * 110.70552 * 260.14825 * 18 16 14 39 39 H 1.09005 * 110.70353 * 23.20105 * 18 16 14 40 40 H 1.09004 * 110.98989 * 82.44015 * 19 18 16 41 41 H 1.09000 * 110.99065 * 206.21673 * 19 18 16 42 42 H 1.09003 * 110.37334 * 278.23936 * 20 19 18 43 43 H 1.09002 * 110.37306 * 155.90131 * 20 19 18 44 44 H 1.07996 * 119.96500 * 0.02562 * 23 22 21 45 45 H 1.08004 * 120.04074 * 180.02562 * 24 23 22 46 46 H 1.07998 * 120.04173 * 179.69614 * 28 25 24 47 47 H 1.07994 * 119.96390 * 180.29508 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3317 1.1314 5 6 2.6027 1.9785 2.3864 6 6 3.0024 3.4311 2.3486 7 1 3.4986 3.8322 1.4773 8 6 2.7356 4.2478 3.4270 9 7 2.1319 3.7592 4.4883 10 14 3.2317 6.0481 3.3806 11 1 2.1207 6.8531 2.8124 12 1 3.5275 6.5157 4.7586 13 1 4.4412 6.2065 2.5337 14 6 4.2096 0.7612 1.0178 15 8 4.9448 0.7035 1.9806 16 6 4.6554 0.1948 -0.3057 17 1 3.8528 0.2868 -1.0375 18 6 5.9094 0.9426 -0.8050 19 6 6.7605 -0.1878 -1.4410 20 6 6.4546 -1.3780 -0.4980 21 7 5.0274 -1.2229 -0.1449 22 6 4.7849 -1.6579 1.1549 23 6 3.5421 -2.1876 1.4893 24 6 3.2991 -2.6191 2.7736 25 6 4.3024 -2.5244 3.7427 26 6 4.0532 -2.9729 5.0797 27 7 3.8553 -3.3276 6.1406 28 6 5.5475 -1.9858 3.4050 29 6 5.7856 -1.5614 2.1173 30 1 -0.5401 -0.9352 -0.0004 31 1 -0.5401 0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0898 34 1 2.6213 1.4026 -0.9314 35 1 1.5228 1.9021 2.5134 36 1 3.1023 1.4857 3.2203 37 1 1.9445 4.3336 5.2472 38 1 5.6408 1.6896 -1.5521 39 1 6.4391 1.4056 0.0276 40 1 6.4301 -0.4004 -2.4578 41 1 7.8208 0.0638 -1.4218 42 1 7.0750 -1.3225 0.3966 43 1 6.6169 -2.3236 -1.0153 44 1 2.7677 -2.2609 0.7401 45 1 2.3346 -3.0305 3.0324 46 1 6.3230 -1.9066 4.1524 47 1 6.7488 -1.1497 1.8546 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590409839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:50 Heat of formation + Delta-G solvation = 61.177912 kcal Electronic energy + Delta-G solvation = -30652.964473 eV Core-core repulsion = 26801.849575 eV Total energy + Delta-G solvation = -3851.114898 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.29860 -39.93442 -38.79167 -37.33101 -37.07707 -35.10438 -33.74277 -33.51468 -32.22480 -30.93783 -29.84983 -29.08648 -26.84529 -25.38990 -24.53466 -23.95896 -22.50534 -21.87130 -20.99972 -20.11203 -19.63620 -18.67557 -18.36539 -17.89344 -16.91621 -16.59076 -16.48191 -16.04236 -16.01769 -15.61283 -15.46338 -15.13134 -15.03492 -14.58602 -14.49703 -14.29004 -14.16935 -14.03473 -13.91241 -13.58312 -13.33282 -13.17083 -12.93849 -12.89993 -12.81910 -12.73740 -12.58922 -12.36928 -12.26094 -12.22117 -12.05539 -11.90371 -11.67047 -11.56852 -10.63862 -10.63193 -10.26247 -10.04156 -9.90178 -9.41967 -8.91672 -8.20538 -6.35593 -0.24854 0.47888 1.35667 1.38189 1.39454 1.48099 1.54506 1.79966 1.85136 2.34193 2.52017 2.72722 2.94524 3.03265 3.09153 3.50088 3.76902 3.81610 3.90454 3.92744 4.09105 4.18947 4.25314 4.29217 4.37583 4.48431 4.55377 4.59887 4.70000 4.81528 4.91322 4.96149 4.97272 5.02739 5.07942 5.11021 5.14401 5.16444 5.27914 5.31980 5.36954 5.43577 5.56505 5.60744 5.78478 5.80734 5.83189 6.01779 6.09313 6.26773 6.38975 6.72917 6.84814 7.30678 7.52801 8.85529 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008232 B = 0.005042 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3400.725361 B = 5552.373224 C = 6626.232290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.182 4.182 3 C 0.130 3.870 4 N -0.591 5.591 5 C 0.272 3.728 6 C -0.537 4.537 7 H 0.056 0.944 8 C 0.008 3.992 9 N -0.930 5.930 10 Si 0.962 3.038 11 H -0.265 1.265 12 H -0.286 1.286 13 H -0.269 1.269 14 C 0.490 3.510 15 O -0.566 6.566 16 C 0.059 3.941 17 H 0.127 0.873 18 C -0.132 4.132 19 C -0.111 4.111 20 C 0.021 3.979 21 N -0.464 5.464 22 C 0.115 3.885 23 C -0.117 4.117 24 C -0.064 4.064 25 C -0.059 4.059 26 C 0.281 3.719 27 N -0.469 5.469 28 C -0.066 4.066 29 C -0.110 4.110 30 H 0.117 0.883 31 H 0.094 0.906 32 H 0.120 0.880 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.011 0.989 36 H -0.004 1.004 37 H 0.264 0.736 38 H 0.099 0.901 39 H 0.052 0.948 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.061 0.939 43 H 0.110 0.890 44 H 0.150 0.850 45 H 0.147 0.853 46 H 0.133 0.867 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.104 -11.244 -18.116 21.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.201 4.201 3 C 0.008 3.992 4 N -0.321 5.321 5 C 0.151 3.849 6 C -0.575 4.575 7 H 0.074 0.926 8 C -0.190 4.190 9 N -0.570 5.570 10 Si 0.787 3.213 11 H -0.190 1.190 12 H -0.212 1.212 13 H -0.193 1.193 14 C 0.278 3.722 15 O -0.445 6.445 16 C -0.049 4.049 17 H 0.144 0.856 18 C -0.170 4.170 19 C -0.148 4.148 20 C -0.104 4.104 21 N -0.185 5.185 22 C 0.019 3.981 23 C -0.136 4.136 24 C -0.085 4.085 25 C -0.063 4.063 26 C -0.033 4.033 27 N -0.145 5.145 28 C -0.088 4.088 29 C -0.129 4.129 30 H 0.135 0.865 31 H 0.113 0.887 32 H 0.138 0.862 33 H 0.093 0.907 34 H 0.122 0.878 35 H 0.029 0.971 36 H 0.014 0.986 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.071 0.929 40 H 0.119 0.881 41 H 0.112 0.888 42 H 0.079 0.921 43 H 0.128 0.872 44 H 0.168 0.832 45 H 0.165 0.835 46 H 0.151 0.849 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.797 -12.039 -16.146 20.704 hybrid contribution 0.416 1.822 1.202 2.222 sum 5.214 -10.218 -14.944 18.839 Atomic orbital electron populations 1.24022 0.95617 1.02716 0.98630 1.23454 0.96707 0.98375 1.01566 1.20851 0.92654 0.96451 0.89281 1.48136 1.14799 1.54290 1.14852 1.18559 0.93712 0.91032 0.81623 1.21721 1.38504 0.95400 1.01897 0.92566 1.25820 0.95026 1.03415 0.94782 1.70072 1.42833 1.37685 1.06363 0.85488 0.78972 0.79515 0.77305 1.18983 1.21211 1.19349 1.21291 0.81459 0.78409 0.91062 1.90674 1.54130 1.58266 1.41431 1.22870 1.01021 0.87012 0.94017 0.85573 1.22798 0.94199 0.99195 1.00857 1.22687 1.00636 0.91890 0.99615 1.23595 0.85796 1.01434 0.99613 1.61515 1.22055 1.15291 1.19621 1.19180 0.94196 0.95435 0.89281 1.20973 0.96700 0.99584 0.96358 1.21178 0.98035 0.97351 0.91938 1.16121 0.96935 1.07286 0.85922 1.25989 0.92365 0.92109 0.92850 1.81191 1.09183 1.11788 1.12363 1.21048 0.95250 0.95489 0.96977 1.21400 1.01224 0.97770 0.92544 0.86507 0.88734 0.86242 0.90661 0.87842 0.97067 0.98565 0.92689 0.88288 0.92937 0.88130 0.88771 0.92114 0.87191 0.83240 0.83534 0.84865 0.84367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.78 14.32 67.79 0.97 -2.81 16 2 C -0.18 -4.43 9.66 25.66 0.25 -4.18 16 3 C 0.13 3.78 5.48 85.63 0.47 4.25 16 4 N -0.59 -23.07 2.46 -830.49 -2.04 -25.11 16 5 C 0.27 14.18 5.17 85.63 0.44 14.62 16 6 C -0.54 -29.89 9.39 25.60 0.24 -29.65 16 7 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 8 C 0.01 0.48 5.46 84.66 0.46 0.94 16 9 N -0.93 -56.36 13.29 21.45 0.28 -56.08 16 10 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 11 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 12 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 14 C 0.49 17.89 4.95 87.66 0.43 18.32 16 15 O -0.57 -25.12 12.48 -3.03 -0.04 -25.16 16 16 C 0.06 1.48 3.43 44.51 0.15 1.63 16 17 H 0.13 2.66 5.38 -2.39 -0.01 2.65 16 18 C -0.13 -2.83 6.45 31.77 0.20 -2.62 16 19 C -0.11 -1.56 7.08 31.97 0.23 -1.33 16 20 C 0.02 0.37 6.50 86.77 0.56 0.93 16 21 N -0.46 -10.35 5.16 -665.63 -3.43 -13.78 16 22 C 0.12 3.08 3.25 38.42 0.12 3.20 16 23 C -0.12 -3.02 9.23 22.36 0.21 -2.81 16 24 C -0.06 -1.73 9.75 22.51 0.22 -1.51 16 25 C -0.06 -1.78 5.74 -21.27 -0.12 -1.91 16 26 C 0.28 9.32 15.33 88.33 1.35 10.67 16 27 N -0.47 -17.20 18.54 19.00 0.35 -16.85 16 28 C -0.07 -1.97 9.75 22.51 0.22 -1.75 16 29 C -0.11 -3.13 6.19 22.36 0.14 -2.99 16 30 H 0.12 2.05 8.06 -2.91 -0.02 2.03 16 31 H 0.09 2.14 7.84 -2.91 -0.02 2.11 16 32 H 0.12 2.66 5.49 -2.91 -0.02 2.65 16 33 H 0.07 2.38 7.68 -2.38 -0.02 2.36 16 34 H 0.10 2.34 6.11 -2.39 -0.01 2.33 16 35 H 0.01 0.62 8.07 -2.39 -0.02 0.60 16 36 H 0.00 -0.23 7.36 -2.39 -0.02 -0.25 16 37 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 38 H 0.10 1.76 8.14 -2.39 -0.02 1.75 16 39 H 0.05 1.46 7.62 -2.38 -0.02 1.44 16 40 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.06 1.15 4.94 -2.39 -0.01 1.14 16 43 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.15 3.23 5.90 -2.91 -0.02 3.21 16 45 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 46 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 47 H 0.14 3.69 5.76 -2.91 -0.02 3.67 16 Total: -1.00 -73.38 384.92 4.70 -68.68 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.99 Total: 18.97 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 6.55 Total: 3.00 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -4.84 Total: -111.82 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.04 Total: -25.16 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -73.38 4.70 -68.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590409839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.861 kcal (2) G-P(sol) polarization free energy of solvation -73.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds