Wall clock time and date at job start Tue Mar 31 2020 22:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 119.99903 * 2 1 4 4 C 1.53117 * 109.52136 * 120.00000 * 3 2 1 5 5 C 1.53040 * 109.27953 * 177.56150 * 4 3 2 6 6 N 1.46854 * 109.52055 * 300.81738 * 5 4 3 7 7 C 1.46901 * 110.99764 * 185.83735 * 6 5 4 8 8 C 1.50703 * 109.47119 * 170.00359 * 7 6 5 9 9 N 1.29832 * 118.34357 * 359.73795 * 8 7 6 10 10 C 1.35637 * 121.61914 * 179.72189 * 9 8 7 11 11 C 1.39638 * 121.62078 * 180.25007 * 10 9 8 12 12 C 1.37707 * 119.69233 * 180.30182 * 11 10 9 13 13 C 1.38881 * 120.82896 * 0.02562 * 12 11 10 14 14 C 1.37796 * 120.56568 * 359.97438 * 13 12 11 15 15 C 1.39366 * 119.52245 * 0.02562 * 14 13 12 16 16 C 1.46952 * 121.90690 * 179.97438 * 15 14 13 17 17 O 1.21725 * 121.28738 * 0.04238 * 16 15 14 18 18 N 1.35340 * 117.42632 * 180.02562 * 16 15 14 19 19 C 1.37108 * 119.71832 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99808 * 221.20360 * 19 18 16 21 21 C 1.39076 * 119.99833 * 41.21020 * 19 18 16 22 22 N 1.31259 * 120.00339 * 19.57360 * 21 19 18 23 23 Si 1.86805 * 119.99692 * 199.57737 * 21 19 18 24 24 H 1.48501 * 109.47369 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.46798 * 119.99911 * 23 21 19 26 26 H 1.48495 * 109.47168 * 239.99442 * 23 21 19 27 27 C 1.46848 * 111.19602 * 61.74427 * 6 5 4 28 28 C 1.53039 * 109.52325 * 298.25722 * 27 6 5 29 29 H 1.08000 * 119.99797 * 179.97438 * 1 2 3 30 30 H 1.07993 * 119.99965 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.99868 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.52382 * 359.87272 * 3 2 1 33 33 H 1.09001 * 109.50697 * 57.62251 * 4 3 2 34 34 H 1.09000 * 109.54044 * 297.51693 * 4 3 2 35 35 H 1.08997 * 109.46339 * 180.80659 * 5 4 3 36 36 H 1.09000 * 109.45600 * 60.83195 * 5 4 3 37 37 H 1.08998 * 109.47385 * 290.00230 * 7 6 5 38 38 H 1.08997 * 109.46982 * 50.00149 * 7 6 5 39 39 H 1.07993 * 120.15135 * 0.28462 * 11 10 9 40 40 H 1.08003 * 119.58785 * 179.97438 * 12 11 10 41 41 H 1.07993 * 119.71615 * 180.02562 * 13 12 11 42 42 H 1.08001 * 120.23248 * 180.02562 * 14 13 12 43 43 H 0.96996 * 119.99831 * 180.02562 * 22 21 19 44 44 H 1.09005 * 109.46234 * 58.27013 * 27 6 5 45 45 H 1.09002 * 109.46468 * 178.23674 * 27 6 5 46 46 H 1.09003 * 109.49856 * 299.23943 * 28 27 6 47 47 H 1.09000 * 109.53534 * 179.14180 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9442 1.3874 1.2498 5 6 3.7523 2.6866 1.2139 6 7 4.5844 2.7136 0.0042 7 6 5.4763 3.8808 0.0047 8 6 6.4775 3.7486 -1.1139 9 7 6.4227 2.6936 -1.8686 10 6 7.2873 2.5095 -2.8974 11 6 7.2252 1.3773 -3.7122 12 6 8.1270 1.2278 -4.7421 13 6 9.0999 2.1896 -4.9815 14 6 9.1815 3.3155 -4.1913 15 6 8.2784 3.4862 -3.1437 16 6 8.3182 4.6660 -2.2684 17 8 9.1464 5.5437 -2.4278 18 7 7.3982 4.7391 -1.2785 19 6 7.3928 5.8191 -0.4340 20 1 7.2266 5.6768 0.6236 21 6 7.6013 7.0980 -0.9393 22 7 7.4223 7.3358 -2.2177 23 14 8.1362 8.4772 0.2014 24 1 8.2665 7.9531 1.5847 25 1 9.4451 9.0137 -0.2505 26 1 7.1218 9.5614 0.1769 27 6 3.7582 2.6833 -1.2094 28 6 2.9502 1.3840 -1.2458 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3559 2.1342 -0.0023 33 1 3.6247 0.5362 1.2723 34 1 2.3157 1.3744 2.1402 35 1 4.3911 2.7415 2.0953 36 1 3.0712 3.5376 1.2053 37 1 4.8885 4.7874 -0.1391 38 1 6.0019 3.9360 0.9581 39 1 6.4736 0.6223 -3.5354 40 1 8.0777 0.3512 -5.3711 41 1 9.7978 2.0543 -5.7945 42 1 9.9400 4.0602 -4.3826 43 1 7.5680 8.2277 -2.5701 44 1 3.0772 3.5344 -1.2065 45 1 4.4012 2.7358 -2.0880 46 1 3.6308 0.5327 -1.2626 47 1 2.3255 1.3682 -2.1388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732206071.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:11 Heat of formation + Delta-G solvation = 47.102313 kcal Electronic energy + Delta-G solvation = -29930.633294 eV Core-core repulsion = 26078.908032 eV Total energy + Delta-G solvation = -3851.725262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.51111 -38.92645 -37.57571 -36.43609 -34.90243 -33.75787 -31.92820 -31.46899 -30.58755 -30.33569 -28.97781 -26.64645 -25.77960 -23.61037 -23.00155 -22.75315 -21.46477 -20.76211 -19.81433 -19.57605 -18.74897 -17.80124 -16.90961 -15.79145 -15.66314 -15.11826 -14.78431 -14.69240 -14.49015 -14.29710 -14.12757 -13.84898 -13.82253 -13.66188 -13.40509 -12.99721 -12.57464 -12.42915 -12.27100 -12.22375 -11.87835 -11.76841 -11.65896 -11.32496 -11.22131 -11.05998 -11.00607 -10.92457 -10.80126 -10.58031 -10.53248 -10.34055 -10.05395 -9.56372 -9.29661 -8.90858 -8.67723 -8.35018 -8.33986 -7.85538 -7.02272 -6.68626 -4.53085 1.52725 1.69093 2.23320 3.02768 3.11746 3.15539 3.25526 3.72601 3.92106 4.06575 4.50977 4.69304 4.73219 4.89482 4.92126 5.09284 5.15861 5.25458 5.38833 5.40322 5.48258 5.52892 5.56385 5.65148 5.73688 5.76994 5.82337 5.83538 5.89765 5.95245 5.99139 6.10883 6.14080 6.18250 6.21482 6.30554 6.44245 6.52325 6.56485 6.65410 6.74603 6.77466 6.83379 7.04358 7.08796 7.16691 7.40517 7.53424 7.54959 7.62576 8.13054 8.47360 8.72598 9.20851 9.52342 10.32192 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009681 B = 0.004369 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.675013 B = 6406.873362 C = 8893.954845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.136 4.136 3 C -0.066 4.066 4 C -0.102 4.102 5 C 0.055 3.945 6 N -0.515 5.515 7 C 0.124 3.876 8 C 0.363 3.637 9 N -0.544 5.544 10 C 0.167 3.833 11 C -0.130 4.130 12 C -0.091 4.091 13 C -0.177 4.177 14 C -0.039 4.039 15 C -0.210 4.210 16 C 0.520 3.480 17 O -0.503 6.503 18 N -0.352 5.352 19 C -0.384 4.384 20 H 0.108 0.892 21 C 0.079 3.921 22 N -0.799 5.799 23 Si 0.927 3.073 24 H -0.263 1.263 25 H -0.273 1.273 26 H -0.277 1.277 27 C 0.055 3.945 28 C -0.100 4.100 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.029 0.971 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.122 0.878 43 H 0.279 0.721 44 H 0.018 0.982 45 H 0.106 0.894 46 H 0.074 0.926 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.858 -10.152 3.001 13.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.154 4.154 3 C -0.085 4.085 4 C -0.140 4.140 5 C -0.074 4.074 6 N -0.240 5.240 7 C -0.006 4.006 8 C 0.100 3.900 9 N -0.271 5.271 10 C 0.051 3.949 11 C -0.150 4.150 12 C -0.110 4.110 13 C -0.196 4.196 14 C -0.058 4.058 15 C -0.218 4.218 16 C 0.314 3.686 17 O -0.377 6.377 18 N -0.055 5.055 19 C -0.511 4.511 20 H 0.125 0.875 21 C -0.138 4.138 22 N -0.427 5.427 23 Si 0.751 3.249 24 H -0.186 1.186 25 H -0.198 1.198 26 H -0.203 1.203 27 C -0.073 4.073 28 C -0.138 4.138 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.047 0.953 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.142 0.858 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.140 0.860 43 H 0.090 0.910 44 H 0.036 0.964 45 H 0.124 0.876 46 H 0.093 0.907 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.511 -10.409 2.783 13.731 hybrid contribution 0.377 2.030 0.137 2.069 sum -8.134 -8.379 2.921 12.038 Atomic orbital electron populations 1.23792 0.96013 1.01455 1.02933 1.23024 0.95744 0.98504 0.98118 1.20481 0.96733 0.94862 0.96387 1.21534 0.97555 0.98398 0.96539 1.22083 0.95206 0.96614 0.93448 1.61613 1.20107 1.40557 1.01704 1.20714 0.92361 0.92020 0.95455 1.22714 0.87362 0.85768 0.94119 1.68483 1.27772 1.21734 1.09132 1.18865 0.90552 0.93146 0.92342 1.20584 1.00876 0.97301 0.96270 1.20967 0.94826 0.98313 0.96929 1.20825 1.01233 0.95755 1.01828 1.20877 0.96419 0.96275 0.92250 1.20853 1.01815 0.97906 1.01226 1.18199 0.81784 0.86288 0.82315 1.90665 1.36968 1.40072 1.69970 1.42266 1.21089 1.16964 1.25223 1.19618 1.56632 0.83929 0.90931 0.87491 1.25402 0.93370 0.98942 0.96068 1.69815 1.35788 1.23318 1.13784 0.85907 0.78943 0.79800 0.80222 1.18642 1.19844 1.20312 1.22274 0.94915 0.95228 0.94894 1.21518 0.97220 0.99127 0.95905 0.88864 0.88870 0.87468 0.91490 0.90891 0.92009 0.90825 0.95289 0.91623 0.88678 0.85767 0.86593 0.86712 0.86000 0.91032 0.96413 0.87633 0.90736 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.86 14.32 29.01 0.42 -1.45 16 2 C -0.14 -1.35 8.78 -36.03 -0.32 -1.67 16 3 C -0.07 -0.73 2.54 -91.65 -0.23 -0.97 16 4 C -0.10 -1.13 5.36 -26.65 -0.14 -1.27 16 5 C 0.05 0.69 5.46 -3.83 -0.02 0.67 16 6 N -0.52 -8.03 4.32 -236.10 -1.02 -9.04 16 7 C 0.12 2.21 4.09 -4.97 -0.02 2.19 16 8 C 0.36 7.94 7.17 -154.87 -1.11 6.83 16 9 N -0.54 -11.49 7.09 -8.10 -0.06 -11.54 16 10 C 0.17 3.59 6.63 -84.49 -0.56 3.03 16 11 C -0.13 -2.34 10.03 -39.25 -0.39 -2.73 16 12 C -0.09 -1.44 10.00 -39.54 -0.40 -1.84 16 13 C -0.18 -3.01 10.02 -39.51 -0.40 -3.41 16 14 C -0.04 -0.80 9.68 -39.32 -0.38 -1.18 16 15 C -0.21 -4.95 5.89 -104.78 -0.62 -5.56 16 16 C 0.52 13.92 6.93 -12.48 -0.09 13.83 16 17 O -0.50 -14.78 14.28 5.17 0.07 -14.71 16 18 N -0.35 -8.86 2.68 -59.56 -0.16 -9.01 16 19 C -0.38 -9.62 8.23 -14.88 -0.12 -9.74 16 20 H 0.11 2.43 7.07 -52.49 -0.37 2.06 16 21 C 0.08 2.03 4.36 -17.49 -0.08 1.95 16 22 N -0.80 -22.02 11.55 55.50 0.64 -21.38 16 23 Si 0.93 19.60 29.60 -169.99 -5.03 14.57 16 24 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 27 C 0.05 0.84 5.04 -3.83 -0.02 0.82 16 28 C -0.10 -1.28 5.36 -26.65 -0.14 -1.42 16 29 H 0.09 0.73 8.06 -52.49 -0.42 0.31 16 30 H 0.09 0.82 7.83 -52.49 -0.41 0.41 16 31 H 0.11 1.01 8.06 -52.48 -0.42 0.59 16 32 H 0.07 0.76 7.79 -51.93 -0.40 0.35 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.87 8.01 -51.93 -0.42 0.45 16 36 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 1.21 8.03 -51.93 -0.42 0.79 16 38 H 0.10 1.60 7.43 -51.93 -0.39 1.21 16 39 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 40 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 41 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.12 2.51 7.83 -52.49 -0.41 2.10 16 43 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.11 1.92 5.57 -51.93 -0.29 1.63 16 46 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 377.75 15.07 5.69 5.69 Total: -1.00 -29.90 377.75 -11.37 -41.28 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.89 Total: 6.07 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -4.62 Total: -1.91 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: -0.60 Total: -50.99 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.07 Total: -14.71 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.90 -11.37 -41.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732206071.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.378 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds