Wall clock time and date at job start Tue Mar 31 2020 22:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 119.99903 * 2 1 4 4 C 1.53117 * 109.52136 * 120.00000 * 3 2 1 5 5 C 1.53040 * 109.27953 * 177.56150 * 4 3 2 6 6 N 1.46854 * 109.52055 * 300.81738 * 5 4 3 7 7 C 1.46901 * 110.99764 * 185.83735 * 6 5 4 8 8 C 1.50703 * 109.47119 * 170.00359 * 7 6 5 9 9 N 1.29832 * 118.34357 * 359.73795 * 8 7 6 10 10 C 1.35637 * 121.61914 * 179.72189 * 9 8 7 11 11 C 1.39638 * 121.62078 * 180.25007 * 10 9 8 12 12 C 1.37707 * 119.69233 * 180.30182 * 11 10 9 13 13 C 1.38881 * 120.82896 * 0.02562 * 12 11 10 14 14 C 1.37796 * 120.56568 * 359.97438 * 13 12 11 15 15 C 1.39366 * 119.52245 * 0.02562 * 14 13 12 16 16 C 1.46952 * 121.90690 * 179.97438 * 15 14 13 17 17 O 1.21725 * 121.28738 * 0.04238 * 16 15 14 18 18 N 1.35340 * 117.42632 * 180.02562 * 16 15 14 19 19 C 1.37108 * 119.71832 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99808 * 221.20360 * 19 18 16 21 21 C 1.39076 * 119.99833 * 41.21020 * 19 18 16 22 22 N 1.31259 * 120.00339 * 19.57360 * 21 19 18 23 23 Si 1.86805 * 119.99692 * 199.57737 * 21 19 18 24 24 H 1.48501 * 109.47369 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.46798 * 119.99911 * 23 21 19 26 26 H 1.48495 * 109.47168 * 239.99442 * 23 21 19 27 27 C 1.46848 * 111.19602 * 61.74427 * 6 5 4 28 28 C 1.53039 * 109.52325 * 298.25722 * 27 6 5 29 29 H 1.08000 * 119.99797 * 179.97438 * 1 2 3 30 30 H 1.07993 * 119.99965 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.99868 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.52382 * 359.87272 * 3 2 1 33 33 H 1.09001 * 109.50697 * 57.62251 * 4 3 2 34 34 H 1.09000 * 109.54044 * 297.51693 * 4 3 2 35 35 H 1.08997 * 109.46339 * 180.80659 * 5 4 3 36 36 H 1.09000 * 109.45600 * 60.83195 * 5 4 3 37 37 H 1.08998 * 109.47385 * 290.00230 * 7 6 5 38 38 H 1.08997 * 109.46982 * 50.00149 * 7 6 5 39 39 H 1.07993 * 120.15135 * 0.28462 * 11 10 9 40 40 H 1.08003 * 119.58785 * 179.97438 * 12 11 10 41 41 H 1.07993 * 119.71615 * 180.02562 * 13 12 11 42 42 H 1.08001 * 120.23248 * 180.02562 * 14 13 12 43 43 H 0.96996 * 119.99831 * 180.02562 * 22 21 19 44 44 H 1.09005 * 109.46234 * 58.27013 * 27 6 5 45 45 H 1.09002 * 109.46468 * 178.23674 * 27 6 5 46 46 H 1.09003 * 109.49856 * 299.23943 * 28 27 6 47 47 H 1.09000 * 109.53534 * 179.14180 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9442 1.3874 1.2498 5 6 3.7523 2.6866 1.2139 6 7 4.5844 2.7136 0.0042 7 6 5.4763 3.8808 0.0047 8 6 6.4775 3.7486 -1.1139 9 7 6.4227 2.6936 -1.8686 10 6 7.2873 2.5095 -2.8974 11 6 7.2252 1.3773 -3.7122 12 6 8.1270 1.2278 -4.7421 13 6 9.0999 2.1896 -4.9815 14 6 9.1815 3.3155 -4.1913 15 6 8.2784 3.4862 -3.1437 16 6 8.3182 4.6660 -2.2684 17 8 9.1464 5.5437 -2.4278 18 7 7.3982 4.7391 -1.2785 19 6 7.3928 5.8191 -0.4340 20 1 7.2266 5.6768 0.6236 21 6 7.6013 7.0980 -0.9393 22 7 7.4223 7.3358 -2.2177 23 14 8.1362 8.4772 0.2014 24 1 8.2665 7.9531 1.5847 25 1 9.4451 9.0137 -0.2505 26 1 7.1218 9.5614 0.1769 27 6 3.7582 2.6833 -1.2094 28 6 2.9502 1.3840 -1.2458 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3559 2.1342 -0.0023 33 1 3.6247 0.5362 1.2723 34 1 2.3157 1.3744 2.1402 35 1 4.3911 2.7415 2.0953 36 1 3.0712 3.5376 1.2053 37 1 4.8885 4.7874 -0.1391 38 1 6.0019 3.9360 0.9581 39 1 6.4736 0.6223 -3.5354 40 1 8.0777 0.3512 -5.3711 41 1 9.7978 2.0543 -5.7945 42 1 9.9400 4.0602 -4.3826 43 1 7.5680 8.2277 -2.5701 44 1 3.0772 3.5344 -1.2065 45 1 4.4012 2.7358 -2.0880 46 1 3.6308 0.5327 -1.2626 47 1 2.3255 1.3682 -2.1388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732206071.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:10 Heat of formation + Delta-G solvation = 31.278767 kcal Electronic energy + Delta-G solvation = -29931.319454 eV Core-core repulsion = 26078.908032 eV Total energy + Delta-G solvation = -3852.411422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.23277 -40.07919 -39.19689 -38.11764 -36.05944 -35.50234 -33.72495 -32.57677 -31.90844 -31.65749 -30.43137 -28.02932 -27.59685 -24.95365 -24.50901 -23.90518 -22.89504 -22.39185 -20.69380 -20.53752 -20.50780 -19.48688 -18.56307 -17.48988 -16.87072 -16.75939 -16.37017 -16.11253 -15.69709 -15.64678 -15.50770 -15.29044 -15.11251 -14.97834 -14.64229 -14.51539 -14.12112 -13.80308 -13.71636 -13.62664 -13.33577 -13.08145 -12.99973 -12.82737 -12.58578 -12.51002 -12.42622 -12.31596 -12.12156 -11.99020 -11.52723 -11.46165 -11.32285 -11.10081 -10.78762 -10.39761 -10.20653 -10.03982 -9.90310 -9.12293 -8.78208 -8.51619 -6.48026 -0.08334 0.10214 1.32365 1.39695 1.50603 1.50786 1.55334 2.01350 2.26386 2.45040 2.88361 3.10751 3.29697 3.40752 3.82122 3.87224 3.93626 4.00357 4.12166 4.19991 4.26702 4.38623 4.45756 4.47592 4.49200 4.58721 4.61335 4.63705 4.67006 4.74928 4.90180 4.93312 4.97644 5.09960 5.13057 5.16249 5.17680 5.21924 5.34906 5.36927 5.39350 5.57129 5.57517 5.58795 5.78815 5.85236 5.98070 6.02333 6.16487 6.27647 6.40753 6.62815 6.85913 7.43390 7.64620 8.45751 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009681 B = 0.004369 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.675013 B = 6406.873362 C = 8893.954845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C -0.061 4.061 4 C -0.096 4.096 5 C 0.052 3.948 6 N -0.518 5.518 7 C 0.132 3.868 8 C 0.352 3.648 9 N -0.526 5.526 10 C 0.137 3.863 11 C -0.124 4.124 12 C -0.072 4.072 13 C -0.151 4.151 14 C -0.068 4.068 15 C -0.240 4.240 16 C 0.495 3.505 17 O -0.554 6.554 18 N -0.370 5.370 19 C -0.402 4.402 20 H 0.124 0.876 21 C 0.031 3.969 22 N -0.850 5.850 23 Si 0.992 3.008 24 H -0.241 1.241 25 H -0.290 1.290 26 H -0.264 1.264 27 C 0.057 3.943 28 C -0.091 4.091 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.032 0.968 37 H 0.056 0.944 38 H 0.107 0.893 39 H 0.150 0.850 40 H 0.171 0.829 41 H 0.157 0.843 42 H 0.108 0.892 43 H 0.275 0.725 44 H 0.012 0.988 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.395 -13.405 3.242 17.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.166 4.166 3 C -0.080 4.080 4 C -0.134 4.134 5 C -0.076 4.076 6 N -0.243 5.243 7 C 0.003 3.997 8 C 0.088 3.912 9 N -0.252 5.252 10 C 0.022 3.978 11 C -0.144 4.144 12 C -0.092 4.092 13 C -0.169 4.169 14 C -0.088 4.088 15 C -0.247 4.247 16 C 0.291 3.709 17 O -0.433 6.433 18 N -0.075 5.075 19 C -0.528 4.528 20 H 0.141 0.859 21 C -0.181 4.181 22 N -0.480 5.480 23 Si 0.813 3.187 24 H -0.164 1.164 25 H -0.217 1.217 26 H -0.189 1.189 27 C -0.071 4.071 28 C -0.129 4.129 29 H 0.126 0.874 30 H 0.113 0.887 31 H 0.131 0.869 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.124 0.876 39 H 0.168 0.832 40 H 0.189 0.811 41 H 0.174 0.826 42 H 0.126 0.874 43 H 0.084 0.916 44 H 0.030 0.970 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.100 -13.739 3.039 17.321 hybrid contribution 0.807 2.751 -0.118 2.870 sum -9.292 -10.988 2.921 14.684 Atomic orbital electron populations 1.23967 0.95797 1.02305 1.01187 1.22952 0.96016 0.97932 0.99659 1.20406 0.96437 0.95760 0.95361 1.21507 0.97435 0.97025 0.97397 1.22221 0.95256 0.97837 0.92238 1.61646 1.20667 1.39025 1.02953 1.20673 0.91982 0.92675 0.94404 1.23452 0.87744 0.84923 0.95066 1.68585 1.27044 1.20978 1.08637 1.19352 0.90566 0.94315 0.93544 1.20999 1.01610 0.96129 0.95646 1.21567 0.92507 0.99154 0.95926 1.21339 1.01148 0.93594 1.00842 1.21005 0.96538 0.98130 0.93130 1.21012 1.03815 0.97633 1.02221 1.18862 0.81746 0.86970 0.83332 1.90588 1.39023 1.41967 1.71677 1.42374 1.21856 1.17781 1.25491 1.20039 1.56798 0.84191 0.91769 0.85878 1.26406 0.92931 1.01464 0.97265 1.69935 1.38570 1.23499 1.16022 0.84948 0.77658 0.77013 0.79091 1.16382 1.21678 1.18862 1.22181 0.94428 0.96693 0.93788 1.21429 0.97069 0.97018 0.97354 0.87398 0.88686 0.86886 0.91599 0.91240 0.90002 0.89816 0.94974 0.92598 0.87561 0.83187 0.81127 0.82573 0.87354 0.91559 0.96985 0.90666 0.91307 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.98 14.32 67.78 0.97 -2.01 16 2 C -0.15 -2.54 8.78 25.64 0.23 -2.32 16 3 C -0.06 -1.23 2.54 -11.46 -0.03 -1.26 16 4 C -0.10 -1.89 5.36 30.65 0.16 -1.73 16 5 C 0.05 1.23 5.46 86.33 0.47 1.70 16 6 N -0.52 -15.93 4.32 -900.89 -3.89 -19.82 16 7 C 0.13 4.83 4.09 85.56 0.35 5.18 16 8 C 0.35 15.98 7.17 137.94 0.99 16.96 16 9 N -0.53 -22.62 7.09 -179.53 -1.27 -23.89 16 10 C 0.14 5.91 6.63 39.65 0.26 6.17 16 11 C -0.12 -4.11 10.03 22.48 0.23 -3.88 16 12 C -0.07 -1.96 10.00 22.30 0.22 -1.74 16 13 C -0.15 -4.65 10.02 22.32 0.22 -4.42 16 14 C -0.07 -2.87 9.68 22.44 0.22 -2.66 16 15 C -0.24 -11.73 5.89 -19.97 -0.12 -11.85 16 16 C 0.49 28.31 6.93 86.44 0.60 28.91 16 17 O -0.55 -35.20 14.28 -4.43 -0.06 -35.26 16 18 N -0.37 -19.70 2.68 -460.25 -1.23 -20.94 16 19 C -0.40 -21.10 8.23 84.07 0.69 -20.41 16 20 H 0.12 5.76 7.07 -2.91 -0.02 5.74 16 21 C 0.03 1.65 4.36 84.98 0.37 2.02 16 22 N -0.85 -50.14 11.55 21.68 0.25 -49.89 16 23 Si 0.99 41.87 29.60 68.60 2.03 43.90 16 24 H -0.24 -9.19 7.11 99.48 0.71 -8.48 16 25 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 26 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 27 C 0.06 1.76 5.04 86.33 0.44 2.19 16 28 C -0.09 -2.20 5.36 30.65 0.16 -2.04 16 29 H 0.11 1.33 8.06 -2.91 -0.02 1.31 16 30 H 0.09 1.41 7.83 -2.91 -0.02 1.39 16 31 H 0.11 1.82 8.06 -2.91 -0.02 1.79 16 32 H 0.07 1.35 7.79 -2.39 -0.02 1.33 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.82 8.01 -2.39 -0.02 1.80 16 36 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 2.14 8.03 -2.39 -0.02 2.12 16 38 H 0.11 3.60 7.43 -2.39 -0.02 3.58 16 39 H 0.15 4.18 8.06 -2.91 -0.02 4.15 16 40 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 41 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 42 H 0.11 4.74 7.83 -2.91 -0.02 4.72 16 43 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 45 H 0.08 2.78 5.57 -2.39 -0.01 2.77 16 46 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -71.94 377.75 3.22 -68.72 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.96 Total: 28.37 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 6.44 Total: 8.81 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -6.15 Total: -114.54 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.06 Total: -35.26 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -71.94 3.22 -68.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732206071.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.003 kcal (2) G-P(sol) polarization free energy of solvation -71.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds