Wall clock time and date at job start Tue Mar 31 2020 22:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47005 * 2 1 4 4 C 1.52997 * 109.47150 * 239.99907 * 2 1 3 5 5 N 1.46905 * 109.46916 * 119.99971 * 2 1 3 6 6 C 1.46901 * 111.00117 * 87.04895 * 5 2 1 7 7 C 1.52996 * 109.47252 * 93.68273 * 6 5 2 8 8 S 1.81404 * 109.47089 * 175.15663 * 7 6 5 9 9 C 1.81400 * 101.92005 * 180.02562 * 8 7 6 10 10 O 1.42095 * 108.57862 * 294.49109 * 8 7 6 11 11 O 1.42109 * 108.57595 * 65.51429 * 8 7 6 12 12 C 1.46894 * 110.99937 * 323.09065 * 5 2 1 13 13 C 1.50702 * 109.47392 * 286.02973 * 12 5 2 14 14 C 1.38639 * 119.74957 * 278.84305 * 13 12 5 15 15 C 1.37626 * 120.24318 * 179.71939 * 14 13 12 16 16 C 1.40712 * 119.74620 * 0.56703 * 15 14 13 17 17 C 1.41396 * 120.24415 * 179.68173 * 16 15 14 18 18 H 1.08001 * 119.99805 * 213.71184 * 17 16 15 19 19 C 1.39948 * 119.99705 * 33.71776 * 17 16 15 20 20 N 1.30823 * 120.00247 * 5.96038 * 19 17 16 21 21 Si 1.86801 * 119.99691 * 185.96581 * 19 17 16 22 22 H 1.48499 * 109.47599 * 59.99448 * 21 19 17 23 23 H 1.48495 * 109.47059 * 179.97438 * 21 19 17 24 24 H 1.48510 * 109.46958 * 299.99659 * 21 19 17 25 25 C 1.40718 * 119.51351 * 359.70384 * 16 15 14 26 26 C 1.37621 * 119.74199 * 0.02562 * 25 16 15 27 27 H 1.09001 * 109.47210 * 304.67523 * 1 2 3 28 28 H 1.09000 * 109.47177 * 64.67448 * 1 2 3 29 29 H 1.08997 * 109.47115 * 184.67737 * 1 2 3 30 30 H 1.08997 * 109.46713 * 185.29152 * 3 2 1 31 31 H 1.08999 * 109.46906 * 305.29190 * 3 2 1 32 32 H 1.08996 * 109.47173 * 65.29367 * 3 2 1 33 33 H 1.09003 * 109.47117 * 306.25188 * 4 2 1 34 34 H 1.09000 * 109.46867 * 66.25248 * 4 2 1 35 35 H 1.08997 * 109.47323 * 186.24986 * 4 2 1 36 36 H 1.08994 * 109.46706 * 213.68589 * 6 5 2 37 37 H 1.08999 * 109.46471 * 333.68292 * 6 5 2 38 38 H 1.09007 * 109.47242 * 295.15917 * 7 6 5 39 39 H 1.08998 * 109.47142 * 55.15447 * 7 6 5 40 40 H 1.08992 * 109.47272 * 60.00123 * 9 8 7 41 41 H 1.09005 * 109.46711 * 180.02562 * 9 8 7 42 42 H 1.09004 * 109.47189 * 299.99715 * 9 8 7 43 43 H 1.08999 * 109.47520 * 46.03090 * 12 5 2 44 44 H 1.09003 * 109.46697 * 166.03576 * 12 5 2 45 45 H 1.07992 * 119.87891 * 359.97228 * 14 13 12 46 46 H 1.08007 * 120.12482 * 180.27159 * 15 14 13 47 47 H 0.96997 * 119.99818 * 180.02562 * 20 19 17 48 48 H 1.07995 * 120.12838 * 179.97438 * 25 16 15 49 49 H 1.07998 * 119.87280 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0196 -0.6925 1.1995 6 6 2.1285 -2.1386 0.9649 7 6 3.5521 -2.4770 0.5182 8 16 3.7267 -4.2763 0.3668 9 6 5.4543 -4.4420 -0.1610 10 8 3.5907 -4.8546 1.6576 11 8 2.8857 -4.7256 -0.6869 12 6 1.1612 -0.4102 2.3576 13 6 1.4128 0.9957 2.8385 14 6 2.5037 1.2596 3.6524 15 6 2.7463 2.5407 4.0927 16 6 1.8753 3.5825 3.7236 17 6 2.1108 4.9014 4.1755 18 1 1.2785 5.5561 4.3879 19 6 3.4223 5.3585 4.3475 20 7 4.4297 4.6088 3.9806 21 14 3.7345 7.0390 5.1011 22 1 3.1568 7.0835 6.4684 23 1 5.1971 7.2848 5.1739 24 1 3.0975 8.0845 4.2604 25 6 0.7681 3.3019 2.9018 26 6 0.5481 2.0143 2.4686 27 1 -0.3634 0.5847 0.8451 28 1 -0.3633 0.4396 -0.9289 29 1 -0.3633 -1.0242 0.0838 30 1 3.1258 1.4439 -0.0948 31 1 1.6013 1.9830 -0.8388 32 1 1.7561 1.9283 0.9336 33 1 1.5881 -1.7115 -1.3069 34 1 1.7709 -0.1469 -2.1356 35 1 3.1242 -0.8192 -1.1951 36 1 1.8997 -2.6742 1.8862 37 1 1.4238 -2.4346 0.1879 38 1 3.7509 -2.0102 -0.4466 39 1 4.2627 -2.1038 1.2557 40 1 6.1086 -4.0111 0.5967 41 1 5.6946 -5.4972 -0.2917 42 1 5.5975 -3.9174 -1.1057 43 1 0.1153 -0.5136 2.0686 44 1 1.3883 -1.1141 3.1583 45 1 3.1678 0.4576 3.9386 46 1 3.5992 2.7449 4.7231 47 1 5.3387 4.9254 4.1001 48 1 0.0930 4.0938 2.6128 49 1 -0.3013 1.7966 1.8382 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784167242.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:03 Heat of formation + Delta-G solvation = -26.078433 kcal Electronic energy + Delta-G solvation = -28505.004275 eV Core-core repulsion = 24753.256858 eV Total energy + Delta-G solvation = -3751.747417 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.166 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.70125 -37.28461 -37.11687 -36.17207 -33.85327 -33.19480 -31.80475 -29.95272 -29.44829 -29.27929 -27.13249 -26.71952 -26.08522 -23.40742 -22.59959 -21.01275 -20.07885 -19.04748 -18.37916 -17.31033 -16.79427 -16.66592 -16.21512 -15.83424 -15.30114 -14.94879 -14.55400 -14.17755 -13.95169 -13.78486 -13.57749 -13.49647 -13.41827 -12.96856 -12.76854 -12.46930 -12.37285 -12.23188 -12.13940 -12.01236 -11.93277 -11.74178 -11.61764 -11.29555 -11.26375 -11.24361 -11.06955 -11.02566 -10.87510 -10.74737 -10.57272 -10.54636 -10.21376 -9.83641 -9.54542 -9.31042 -9.13482 -7.94274 -7.43120 -7.10981 -6.65561 -4.36710 -0.19905 2.56826 2.74726 3.02472 3.08154 3.10985 3.15860 3.42074 3.82770 3.96778 4.18776 4.50989 4.52505 4.65760 4.71263 4.81284 5.04326 5.13123 5.32005 5.34698 5.36218 5.43100 5.62019 5.65619 5.69584 5.73551 5.82412 5.86426 5.95206 6.14756 6.18114 6.21207 6.30474 6.33768 6.41399 6.51753 6.63837 6.94958 7.06143 7.13925 7.28337 7.33934 7.44681 7.47734 7.62165 7.83692 8.07296 8.10937 8.31620 8.65993 8.92542 8.97405 10.29376 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017156 B = 0.002816 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.669309 B = 9942.447692 C =10645.916964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.112 3.888 3 C -0.158 4.158 4 C -0.161 4.161 5 N -0.511 5.511 6 C 0.058 3.942 7 C -0.606 4.606 8 S 2.414 3.586 9 C -0.656 4.656 10 O -0.942 6.942 11 O -0.945 6.945 12 C 0.104 3.896 13 C -0.190 4.190 14 C -0.083 4.083 15 C -0.153 4.153 16 C 0.113 3.887 17 C -0.469 4.469 18 H 0.074 0.926 19 C 0.074 3.926 20 N -0.807 5.807 21 Si 0.910 3.090 22 H -0.266 1.266 23 H -0.280 1.280 24 H -0.267 1.267 25 C -0.219 4.219 26 C -0.091 4.091 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.041 0.959 32 H 0.106 0.894 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.042 0.958 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.116 0.884 47 H 0.278 0.722 48 H 0.091 0.909 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.086 -12.682 -8.780 15.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.023 3.977 3 C -0.215 4.215 4 C -0.218 4.218 5 N -0.235 5.235 6 C -0.071 4.071 7 C -0.737 4.737 8 S 2.596 3.404 9 C -0.806 4.806 10 O -0.940 6.940 11 O -0.942 6.942 12 C -0.022 4.022 13 C -0.191 4.191 14 C -0.102 4.102 15 C -0.172 4.172 16 C 0.111 3.889 17 C -0.500 4.500 18 H 0.092 0.908 19 C -0.142 4.142 20 N -0.434 5.434 21 Si 0.735 3.265 22 H -0.191 1.191 23 H -0.205 1.205 24 H -0.192 1.192 25 C -0.239 4.239 26 C -0.110 4.110 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.124 0.876 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.106 0.894 46 H 0.133 0.867 47 H 0.089 0.911 48 H 0.109 0.891 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.206 -13.189 -8.543 15.760 hybrid contribution 0.345 1.164 -0.222 1.234 sum 1.551 -12.025 -8.764 14.960 Atomic orbital electron populations 1.22712 0.97314 1.01496 1.03146 1.21011 0.92319 0.95632 0.88775 1.22336 1.00777 0.93835 1.04567 1.22407 1.01565 1.00353 0.97497 1.62341 1.51692 1.05178 1.04327 1.21784 0.91772 0.92323 1.01254 1.30694 1.07671 1.23000 1.12325 1.07966 0.77937 0.78908 0.75552 1.30263 1.25805 1.11614 1.12885 1.93598 1.85289 1.75369 1.39695 1.93586 1.63603 1.79583 1.57474 1.21084 0.94290 0.96069 0.90801 1.18835 1.00181 0.92920 1.07202 1.20500 0.95686 0.96184 0.97818 1.21328 1.01859 0.91001 1.03042 1.17611 0.90150 0.93034 0.88123 1.19500 0.92366 0.97838 1.40316 0.90812 1.25825 0.95913 0.99148 0.93302 1.69766 0.99951 1.37179 1.36497 0.86352 0.77707 0.82129 0.80344 1.19056 1.20459 1.19193 1.21057 1.02888 0.95143 1.04776 1.20413 0.97721 0.93375 0.99473 0.90110 0.92514 0.93380 0.93050 0.94012 0.87600 0.92278 0.92182 0.91578 0.90335 0.91998 0.84324 0.83990 0.85197 0.85524 0.85404 0.93970 0.91626 0.89445 0.86654 0.91109 0.89101 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.54 7.09 37.16 0.26 -2.28 16 2 C 0.11 1.59 0.67 -131.60 -0.09 1.51 16 3 C -0.16 -2.66 8.38 37.16 0.31 -2.35 16 4 C -0.16 -1.89 7.02 37.16 0.26 -1.63 16 5 N -0.51 -7.58 4.20 -220.41 -0.93 -8.51 16 6 C 0.06 0.72 4.57 -3.83 -0.02 0.70 16 7 C -0.61 -5.64 5.79 37.16 0.22 -5.42 16 8 S 2.41 21.49 5.36 -107.50 -0.58 20.92 16 9 C -0.66 -3.50 10.62 101.05 1.07 -2.43 16 10 O -0.94 -12.07 18.10 -57.83 -1.05 -13.11 16 11 O -0.95 -11.49 18.10 -57.83 -1.05 -12.53 16 12 C 0.10 1.69 4.73 -4.98 -0.02 1.67 16 13 C -0.19 -3.76 3.90 -104.33 -0.41 -4.17 16 14 C -0.08 -1.83 9.70 -39.66 -0.38 -2.21 16 15 C -0.15 -3.81 8.63 -38.87 -0.34 -4.15 16 16 C 0.11 2.90 5.51 -106.82 -0.59 2.31 16 17 C -0.47 -12.24 9.05 -37.74 -0.34 -12.58 16 18 H 0.07 1.86 7.85 -52.49 -0.41 1.44 16 19 C 0.07 1.84 5.31 -17.34 -0.09 1.75 16 20 N -0.81 -20.73 10.95 55.55 0.61 -20.12 16 21 Si 0.91 18.73 29.56 -169.99 -5.03 13.70 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 C -0.22 -5.08 9.74 -38.87 -0.38 -5.46 16 26 C -0.09 -1.86 6.45 -39.66 -0.26 -2.12 16 27 H 0.08 1.18 3.30 -51.93 -0.17 1.01 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.60 7.57 -51.93 -0.39 0.20 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.11 2.09 3.13 -51.93 -0.16 1.92 16 33 H 0.06 0.64 6.14 -51.93 -0.32 0.33 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.71 5.60 -51.93 -0.29 0.42 16 36 H 0.08 0.94 7.34 -51.93 -0.38 0.56 16 37 H 0.06 0.72 5.42 -51.93 -0.28 0.44 16 38 H 0.14 1.09 4.98 -51.92 -0.26 0.83 16 39 H 0.14 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.13 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.13 0.59 8.14 -51.92 -0.42 0.17 16 42 H 0.13 0.46 8.14 -51.92 -0.42 0.04 16 43 H 0.04 0.65 5.29 -51.93 -0.27 0.37 16 44 H 0.07 1.03 7.55 -51.93 -0.39 0.64 16 45 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 46 H 0.12 3.03 6.44 -52.48 -0.34 2.70 16 47 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 48 H 0.09 2.02 8.06 -52.49 -0.42 1.60 16 49 H 0.09 1.63 5.50 -52.49 -0.29 1.34 16 LS Contribution 380.39 15.07 5.73 5.73 Total: -1.00 -31.94 380.39 -10.39 -42.34 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -7.33 Total: 8.45 kcal Atomic # 6 Polarization: -36.07 SS G_CDS: -0.79 Total: -36.86 kcal Atomic # 7 Polarization: -28.31 SS G_CDS: -0.32 Total: -28.63 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -2.09 Total: -25.65 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Atomic # 16 Polarization: 21.49 SS G_CDS: -0.58 Total: 20.92 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.94 -10.39 -42.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784167242.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.258 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds