Wall clock time and date at job start Tue Mar 31 2020 22:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47220 * 2 1 4 4 C 1.53005 * 109.47055 * 120.00026 * 2 1 3 5 5 N 1.46904 * 109.46831 * 60.94881 * 4 2 1 6 6 C 1.46902 * 110.99546 * 73.45376 * 5 4 2 7 7 C 1.50696 * 109.47405 * 279.62267 * 6 5 4 8 8 H 1.08006 * 119.99481 * 2.94472 * 7 6 5 9 9 C 1.37879 * 120.00535 * 182.94692 * 7 6 5 10 10 N 1.31515 * 119.99688 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00311 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47184 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47175 * 119.99826 * 11 9 7 14 14 H 1.48503 * 109.46931 * 239.99831 * 11 9 7 15 15 C 1.46900 * 111.00016 * 197.40364 * 5 4 2 16 16 C 1.53002 * 109.47034 * 66.05037 * 15 5 4 17 17 S 1.81398 * 109.47257 * 180.02562 * 16 15 5 18 18 O 1.42099 * 108.57911 * 65.51159 * 17 16 15 19 19 O 1.42107 * 108.57497 * 294.49032 * 17 16 15 20 20 C 1.81400 * 101.92164 * 180.02562 * 17 16 15 21 21 C 1.50695 * 109.46865 * 179.97438 * 20 17 16 22 22 C 1.38230 * 120.00224 * 89.99963 * 21 20 17 23 23 C 1.38239 * 120.00270 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00017 * 359.97438 * 23 22 21 25 25 C 1.38237 * 119.99896 * 0.27009 * 24 23 22 26 26 C 1.38239 * 119.99808 * 359.51520 * 25 24 23 27 27 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46785 * 300.00473 * 1 2 3 29 29 H 1.08998 * 109.46625 * 60.00027 * 1 2 3 30 30 H 1.09002 * 109.47040 * 239.99406 * 2 1 3 31 31 H 1.08997 * 109.47152 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47300 * 299.99560 * 3 2 1 33 33 H 1.09002 * 109.47599 * 59.99748 * 3 2 1 34 34 H 1.09000 * 109.47074 * 300.95915 * 4 2 1 35 35 H 1.08993 * 109.47229 * 180.95296 * 4 2 1 36 36 H 1.09005 * 109.47305 * 39.62677 * 6 5 4 37 37 H 1.09003 * 109.46791 * 159.62310 * 6 5 4 38 38 H 0.96991 * 120.00135 * 179.97438 * 10 9 7 39 39 H 1.09007 * 109.46703 * 306.05260 * 15 5 4 40 40 H 1.09000 * 109.47260 * 186.05170 * 15 5 4 41 41 H 1.08996 * 109.46860 * 60.00164 * 16 15 5 42 42 H 1.09000 * 109.47206 * 300.00166 * 16 15 5 43 43 H 1.08994 * 109.47020 * 60.00091 * 20 17 16 44 44 H 1.08996 * 109.46707 * 299.99701 * 20 17 16 45 45 H 1.08000 * 120.00164 * 359.97438 * 22 21 20 46 46 H 1.07997 * 120.00225 * 180.02562 * 23 22 21 47 47 H 1.07994 * 120.00335 * 179.97438 * 24 23 22 48 48 H 1.07997 * 120.00141 * 179.72800 * 25 24 23 49 49 H 1.08003 * 119.99977 * 180.27347 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2493 5 7 1.5691 -2.1128 1.2378 6 6 2.3016 -2.9081 0.2434 7 6 1.7235 -2.6571 -1.1254 8 1 0.9263 -1.9394 -1.2516 9 6 2.2120 -3.3437 -2.2168 10 7 3.1830 -4.2173 -2.0632 11 14 1.4948 -3.0330 -3.9133 12 1 0.4211 -2.0116 -3.8174 13 1 2.5639 -2.5443 -4.8208 14 1 0.9289 -4.2966 -4.4504 15 6 1.6733 -2.7148 2.5737 16 6 0.7055 -2.0110 3.5271 17 16 0.8345 -2.7539 5.1770 18 8 2.1311 -2.4870 5.6935 19 8 0.3796 -4.0982 5.1049 20 6 -0.3748 -1.7848 6.1199 21 6 -0.4068 -2.2719 7.5456 22 6 0.4336 -1.7085 8.4875 23 6 0.4038 -2.1549 9.7955 24 6 -0.4666 -3.1644 10.1617 25 6 -1.3035 -3.7313 9.2187 26 6 -1.2769 -3.2818 7.9117 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6627 -0.2175 2.1392 35 1 3.1298 -0.7065 1.2579 36 1 3.3533 -2.6214 0.2518 37 1 2.2118 -3.9667 0.4872 38 1 3.5265 -4.7006 -2.8308 39 1 2.6926 -2.6041 2.9436 40 1 1.4206 -3.7736 2.5158 41 1 -0.3138 -2.1216 3.1572 42 1 0.9581 -0.9522 3.5850 43 1 -1.3622 -1.9029 5.6738 44 1 -0.0910 -0.7326 6.1013 45 1 1.1134 -0.9195 8.2016 46 1 1.0601 -1.7145 10.5315 47 1 -0.4896 -3.5135 11.1834 48 1 -1.9804 -4.5230 9.5037 49 1 -1.9338 -3.7217 7.1758 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791471552.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:00 Heat of formation + Delta-G solvation = -47.900362 kcal Electronic energy + Delta-G solvation = -27514.787727 eV Core-core repulsion = 23762.094041 eV Total energy + Delta-G solvation = -3752.693687 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.166 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.55405 -37.83216 -36.95255 -35.98665 -34.14390 -33.37098 -32.81814 -31.21917 -30.60662 -27.78995 -27.02319 -26.52194 -25.21612 -22.92634 -22.70096 -21.76113 -20.71755 -19.14825 -18.86326 -17.24154 -16.93497 -16.47043 -16.31124 -15.97854 -15.41815 -15.35651 -14.97761 -14.69199 -14.29645 -14.07747 -13.74367 -13.58430 -13.40763 -13.09482 -13.05108 -12.97405 -12.52972 -12.40199 -12.04480 -12.03701 -11.95957 -11.80176 -11.67480 -11.36233 -11.34519 -11.19662 -11.18659 -11.04052 -10.81781 -10.57786 -10.50269 -10.27790 -10.12169 -9.97825 -9.42822 -9.24075 -9.11258 -8.99186 -8.40541 -7.37699 -6.03076 -4.02510 -0.20006 1.05349 1.08624 2.71562 3.29687 3.37862 3.40553 3.41666 3.56726 3.89068 4.15610 4.40342 4.42399 4.69120 4.73181 4.75927 4.80937 4.88237 5.01165 5.09253 5.16084 5.27639 5.30980 5.52591 5.61337 5.62915 5.63455 5.71625 5.86648 5.90807 5.99554 6.07755 6.11358 6.16267 6.16913 6.19213 6.24211 6.36489 6.45515 6.61034 6.64111 6.73273 7.09921 7.14074 7.25569 7.35396 7.82252 8.05751 8.13353 8.47964 9.04149 9.59681 11.07617 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019696 B = 0.002504 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.252480 B =11180.605367 C =11824.641341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.108 4.108 3 C -0.144 4.144 4 C 0.069 3.931 5 N -0.524 5.524 6 C 0.188 3.812 7 C -0.504 4.504 8 H 0.079 0.921 9 C 0.053 3.947 10 N -0.898 5.898 11 Si 0.893 3.107 12 H -0.271 1.271 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.067 3.933 16 C -0.601 4.601 17 S 2.409 3.591 18 O -0.935 6.935 19 O -0.930 6.930 20 C -0.572 4.572 21 C -0.089 4.089 22 C -0.104 4.104 23 C -0.120 4.120 24 C -0.114 4.114 25 C -0.119 4.119 26 C -0.103 4.103 27 H 0.075 0.925 28 H 0.032 0.968 29 H 0.036 0.964 30 H 0.114 0.886 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.041 0.959 34 H 0.050 0.950 35 H 0.026 0.974 36 H -0.004 1.004 37 H 0.031 0.969 38 H 0.260 0.740 39 H 0.039 0.961 40 H 0.086 0.914 41 H 0.141 0.859 42 H 0.130 0.870 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.130 0.870 46 H 0.127 0.873 47 H 0.125 0.875 48 H 0.128 0.872 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.476 7.755 20.512 23.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.126 4.126 3 C -0.202 4.202 4 C -0.059 4.059 5 N -0.249 5.249 6 C 0.063 3.937 7 C -0.543 4.543 8 H 0.097 0.903 9 C -0.148 4.148 10 N -0.537 5.537 11 Si 0.721 3.279 12 H -0.195 1.195 13 H -0.212 1.212 14 H -0.211 1.211 15 C -0.063 4.063 16 C -0.731 4.731 17 S 2.592 3.408 18 O -0.932 6.932 19 O -0.927 6.927 20 C -0.698 4.698 21 C -0.090 4.090 22 C -0.123 4.123 23 C -0.138 4.138 24 C -0.132 4.132 25 C -0.137 4.137 26 C -0.122 4.122 27 H 0.094 0.906 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.131 0.869 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.014 0.986 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.105 0.895 41 H 0.159 0.841 42 H 0.148 0.852 43 H 0.161 0.839 44 H 0.159 0.841 45 H 0.148 0.852 46 H 0.145 0.855 47 H 0.143 0.857 48 H 0.146 0.854 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.318 6.938 20.543 23.224 hybrid contribution 0.012 0.839 -1.013 1.315 sum -8.306 7.777 19.530 22.603 Atomic orbital electron populations 1.21671 0.95672 1.02645 0.98800 1.21451 0.96083 0.94000 1.01089 1.21840 1.00513 0.97359 1.00488 1.22077 0.96713 0.89853 0.97283 1.62184 1.58053 1.01928 1.02733 1.19889 0.91397 0.92689 0.89739 1.21418 1.19260 1.22801 0.90781 0.90278 1.25022 0.95256 0.95263 0.99254 1.69967 1.26973 1.26193 1.30615 0.86517 0.79005 0.78117 0.84274 1.19550 1.21203 1.21097 1.21690 0.94887 0.98863 0.90870 1.30435 1.10928 1.12661 1.19124 1.08500 0.76676 0.77229 0.78382 1.93573 1.35478 1.85887 1.78231 1.93587 1.82243 1.30873 1.86032 1.29406 1.19387 1.15313 1.05736 1.18953 0.99126 0.98454 0.92462 1.21189 0.98081 0.99862 0.93131 1.21179 0.99017 0.97476 0.96099 1.21276 0.95834 0.96383 0.99726 1.21190 0.99520 0.99973 0.93040 1.21212 0.98117 0.95893 0.96961 0.90606 0.94860 0.94507 0.86858 0.93347 0.93208 0.93983 0.93143 0.95595 0.98613 0.95139 0.93002 0.94310 0.89529 0.84094 0.85217 0.83925 0.84112 0.85181 0.85465 0.85682 0.85420 0.85066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.40 37.16 0.31 -1.85 16 2 C -0.11 -1.92 2.40 -90.62 -0.22 -2.14 16 3 C -0.14 -2.12 9.19 37.15 0.34 -1.78 16 4 C 0.07 1.24 4.27 -3.82 -0.02 1.22 16 5 N -0.52 -10.53 3.71 -236.06 -0.88 -11.40 16 6 C 0.19 4.68 4.79 -4.98 -0.02 4.66 16 7 C -0.50 -13.28 7.24 -34.44 -0.25 -13.53 16 8 H 0.08 2.00 4.58 -52.48 -0.24 1.76 16 9 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 10 N -0.90 -26.18 13.29 55.43 0.74 -25.45 16 11 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 C 0.07 1.16 4.93 -3.82 -0.02 1.14 16 16 C -0.60 -7.38 5.77 37.16 0.21 -7.16 16 17 S 2.41 29.80 4.70 -107.50 -0.51 29.29 16 18 O -0.93 -14.46 18.10 -57.83 -1.05 -15.51 16 19 O -0.93 -14.66 18.10 -57.83 -1.05 -15.71 16 20 C -0.57 -4.79 5.93 36.00 0.21 -4.58 16 21 C -0.09 -0.92 5.14 -104.63 -0.54 -1.45 16 22 C -0.10 -1.02 9.70 -39.58 -0.38 -1.41 16 23 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 24 C -0.11 -0.93 10.05 -39.58 -0.40 -1.33 16 25 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 26 C -0.10 -1.03 9.70 -39.58 -0.38 -1.41 16 27 H 0.08 1.41 6.74 -51.93 -0.35 1.07 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.11 2.43 5.14 -51.93 -0.27 2.17 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.76 5.91 -51.93 -0.31 0.45 16 35 H 0.03 0.49 7.74 -51.93 -0.40 0.09 16 36 H 0.00 -0.11 7.67 -51.93 -0.40 -0.50 16 37 H 0.03 0.82 7.65 -51.93 -0.40 0.42 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.04 0.67 8.12 -51.93 -0.42 0.25 16 40 H 0.09 1.55 7.80 -51.93 -0.41 1.15 16 41 H 0.14 1.49 8.14 -51.93 -0.42 1.06 16 42 H 0.13 1.31 6.27 -51.92 -0.33 0.98 16 43 H 0.14 0.83 8.08 -51.93 -0.42 0.41 16 44 H 0.14 0.80 8.09 -51.93 -0.42 0.38 16 45 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 46 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 47 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 48 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 49 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 403.04 15.07 6.07 6.07 Total: -1.00 -34.56 403.04 -11.86 -46.42 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -8.14 Total: 1.32 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: -2.04 Total: -31.13 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: -0.14 Total: -36.85 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -2.09 Total: -31.22 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 29.80 SS G_CDS: -0.51 Total: 29.29 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.56 -11.86 -46.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791471552.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.480 kcal (2) G-P(sol) polarization free energy of solvation -34.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds