Wall clock time and date at job start Tue Mar 31 2020 22:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36961 * 120.00318 * 2 1 4 4 H 1.07999 * 120.00094 * 173.51626 * 3 2 1 5 5 C 1.38992 * 119.99544 * 353.51827 * 3 2 1 6 6 N 1.31394 * 120.00366 * 5.11522 * 5 3 2 7 7 Si 1.86798 * 119.99546 * 185.11556 * 5 3 2 8 8 H 1.48508 * 109.47251 * 60.00251 * 7 5 3 9 9 H 1.48498 * 109.47162 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47601 * 300.00113 * 7 5 3 11 11 C 1.34781 * 119.99773 * 179.97438 * 2 1 3 12 12 O 1.21616 * 119.99847 * 5.75214 * 11 2 1 13 13 C 1.47441 * 119.99680 * 185.74441 * 11 2 1 14 14 C 1.36673 * 125.77413 * 174.18394 * 13 11 2 15 15 N 1.34834 * 106.82302 * 179.74013 * 14 13 11 16 16 C 1.46504 * 126.59244 * 180.26385 * 15 14 13 17 17 C 1.53001 * 109.47298 * 124.99905 * 16 15 14 18 18 N 1.46497 * 109.47021 * 180.02562 * 17 16 15 19 19 C 1.34782 * 119.99867 * 179.97438 * 18 17 16 20 20 O 1.21505 * 119.99841 * 0.02562 * 19 18 17 21 21 O 1.34639 * 119.99909 * 179.97438 * 19 18 17 22 22 C 1.45197 * 116.99891 * 180.02562 * 21 19 18 23 23 C 1.53000 * 109.47108 * 60.00034 * 22 21 19 24 24 C 1.52994 * 109.47200 * 180.02562 * 22 21 19 25 25 C 1.52996 * 109.47298 * 300.00559 * 22 21 19 26 26 N 1.40209 * 106.81906 * 0.26089 * 15 14 13 27 27 N 1.28756 * 108.38289 * 0.02562 * 26 15 14 28 28 H 1.08994 * 109.47391 * 184.65196 * 1 2 3 29 29 H 1.09003 * 109.46994 * 304.64938 * 1 2 3 30 30 H 1.09000 * 109.46857 * 64.64461 * 1 2 3 31 31 H 0.97000 * 120.00124 * 179.97438 * 6 5 3 32 32 H 1.07994 * 126.58629 * 0.02562 * 14 13 11 33 33 H 1.09000 * 109.46808 * 245.00064 * 16 15 14 34 34 H 1.09001 * 109.46608 * 4.99855 * 16 15 14 35 35 H 1.09005 * 109.46975 * 300.00178 * 17 16 15 36 36 H 1.09001 * 109.47066 * 59.99913 * 17 16 15 37 37 H 0.96998 * 120.00400 * 359.97438 * 18 17 16 38 38 H 1.08998 * 109.46891 * 60.00019 * 23 22 21 39 39 H 1.09005 * 109.47421 * 179.97438 * 23 22 21 40 40 H 1.08994 * 109.47453 * 300.00153 * 23 22 21 41 41 H 1.08995 * 109.47649 * 60.00103 * 24 22 21 42 42 H 1.09005 * 109.47269 * 180.02562 * 24 22 21 43 43 H 1.09002 * 109.47384 * 299.99859 * 24 22 21 44 44 H 1.09004 * 109.47691 * 59.99927 * 25 22 21 45 45 H 1.08996 * 109.47456 * 180.02562 * 25 22 21 46 46 H 1.09006 * 109.46874 * 299.99875 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1861 0.0000 4 1 3.2246 1.1890 0.1056 5 6 1.4615 2.3859 -0.1359 6 7 0.1479 2.3903 -0.1633 7 14 2.4041 3.9922 -0.2796 8 1 3.2829 3.9452 -1.4759 9 1 1.4455 5.1183 -0.4142 10 1 3.2335 4.1901 0.9363 11 6 2.1388 -1.1673 0.0005 12 8 1.5353 -2.2178 -0.1046 13 6 3.6077 -1.1704 0.1283 14 6 4.3963 -2.2795 0.2547 15 7 5.6702 -1.8452 0.3369 16 6 6.8688 -2.6759 0.4766 17 6 7.8531 -2.3442 -0.6467 18 7 9.0514 -3.1753 -0.5073 19 6 10.0613 -3.0555 -1.3917 20 8 9.9781 -2.2577 -2.3044 21 8 11.1629 -3.8190 -1.2633 22 6 12.2107 -3.6359 -2.2516 23 6 12.7060 -2.1890 -2.2077 24 6 13.3725 -4.5828 -1.9444 25 6 11.6574 -3.9434 -3.6444 26 7 5.6273 -0.4457 0.2628 27 7 4.3976 -0.0829 0.1446 28 1 -0.3634 -1.0242 0.0833 29 1 -0.3633 0.5843 0.8454 30 1 -0.3633 0.4401 -0.9287 31 1 -0.3325 3.2277 -0.2577 32 1 4.0635 -3.3066 0.2789 33 1 7.3375 -2.4781 1.4406 34 1 6.5905 -3.7281 0.4170 35 1 7.3843 -2.5419 -1.6108 36 1 8.1313 -1.2919 -0.5871 37 1 9.1180 -3.8119 0.2215 38 1 13.1002 -1.9699 -1.2154 39 1 13.4930 -2.0517 -2.9493 40 1 11.8782 -1.5147 -2.4268 41 1 13.0194 -5.6135 -1.9759 42 1 14.1594 -4.4451 -2.6861 43 1 13.7669 -4.3641 -0.9520 44 1 10.8294 -3.2692 -3.8636 45 1 12.4441 -3.8065 -4.3863 46 1 11.3045 -4.9743 -3.6757 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824863770.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:51 Heat of formation + Delta-G solvation = 13.267008 kcal Electronic energy + Delta-G solvation = -29009.534086 eV Core-core repulsion = 24745.492352 eV Total energy + Delta-G solvation = -4264.041734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.61569 -41.07288 -38.19015 -37.91340 -35.95546 -34.79050 -34.54886 -33.63105 -31.36088 -30.43730 -29.30992 -27.79515 -27.72817 -26.40710 -24.72693 -24.56069 -22.48127 -21.89337 -21.52940 -20.43037 -19.26985 -18.59761 -17.86146 -17.07744 -16.70308 -16.33477 -15.89498 -15.75938 -15.11565 -15.03984 -14.79400 -14.51271 -14.29723 -14.15300 -13.85532 -13.71645 -13.66330 -12.92239 -12.86127 -12.71752 -12.59836 -12.32072 -12.27403 -12.27069 -11.80140 -11.71629 -11.69093 -11.52658 -11.50344 -11.13961 -10.86871 -10.72367 -10.53724 -10.39318 -10.33823 -9.97677 -9.61170 -9.31618 -8.99690 -8.61823 -8.56303 -7.88155 -6.23727 -3.74004 1.51340 1.72690 2.45534 2.51798 2.56576 3.27689 3.28624 3.34352 3.78153 4.06243 4.17463 4.32884 4.33202 4.37646 4.39279 4.52011 4.71678 4.76465 4.90148 5.08589 5.16038 5.16545 5.25724 5.26783 5.31519 5.38698 5.49148 5.51000 5.55576 5.60323 5.73556 5.83359 5.91179 5.94098 6.03255 6.16565 6.44779 6.75571 6.95580 6.99107 7.28011 7.49594 7.71195 7.85257 8.03068 8.53726 8.69711 9.15573 9.57370 9.92641 10.69383 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018601 B = 0.002090 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.969621 B =13394.009489 C =14390.999340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.412 5.412 3 C -0.330 4.330 4 H 0.153 0.847 5 C 0.027 3.973 6 N -0.876 5.876 7 Si 0.932 3.068 8 H -0.271 1.271 9 H -0.285 1.285 10 H -0.271 1.271 11 C 0.499 3.501 12 O -0.622 6.622 13 C -0.038 4.038 14 C 0.060 3.940 15 N -0.374 5.374 16 C 0.120 3.880 17 C 0.125 3.875 18 N -0.710 5.710 19 C 0.652 3.348 20 O -0.560 6.560 21 O -0.365 6.365 22 C 0.137 3.863 23 C -0.185 4.185 24 C -0.141 4.141 25 C -0.185 4.185 26 N -0.092 5.092 27 N -0.185 5.185 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.267 0.733 32 H 0.197 0.803 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.407 0.593 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.071 0.929 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.393 -13.545 -0.390 27.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.125 5.125 3 C -0.460 4.460 4 H 0.169 0.831 5 C -0.176 4.176 6 N -0.516 5.516 7 Si 0.758 3.242 8 H -0.196 1.196 9 H -0.211 1.211 10 H -0.196 1.196 11 C 0.286 3.714 12 O -0.511 6.511 13 C -0.177 4.177 14 C -0.095 4.095 15 N -0.162 5.162 16 C -0.003 4.003 17 C 0.001 3.999 18 N -0.371 5.371 19 C 0.405 3.595 20 O -0.448 6.448 21 O -0.280 6.280 22 C 0.100 3.900 23 C -0.242 4.242 24 C -0.198 4.198 25 C -0.242 4.242 26 N -0.070 5.070 27 N -0.057 5.057 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.214 0.786 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.242 0.758 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.090 0.910 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 23.788 -12.196 -0.947 26.749 hybrid contribution -0.077 -0.273 0.249 0.378 sum 23.711 -12.470 -0.698 26.799 Atomic orbital electron populations 1.21688 0.79174 0.97773 1.03725 1.43763 1.06562 1.05043 1.57113 1.21424 0.95938 0.82196 1.46444 0.83112 1.25479 0.95656 1.00198 0.96288 1.70246 1.06186 1.27472 1.47733 0.85894 0.78816 0.79991 0.79473 1.19570 1.21084 1.19604 1.16385 0.83453 0.84247 0.87283 1.90610 1.68141 1.31349 1.61022 1.21722 0.96844 0.87721 1.11376 1.23152 0.83049 1.01461 1.01843 1.50053 1.05759 1.08129 1.52278 1.21778 0.83761 0.94610 1.00149 1.21529 0.83006 0.96355 0.98970 1.44395 1.16780 1.44422 1.31471 1.17953 0.80145 0.79665 0.81716 1.90953 1.80999 1.39137 1.33688 1.86286 1.26452 1.60690 1.54548 1.22100 0.84554 0.96661 0.86685 1.22529 1.03262 0.95829 1.02585 1.21864 0.95765 0.99116 1.03024 1.22529 1.03527 1.02976 0.95161 1.81984 1.15069 0.86577 1.23367 1.74741 0.96370 1.24577 1.10061 0.94486 0.90998 0.91551 0.92249 0.78630 0.88137 0.87437 0.90025 0.89017 0.75801 0.92103 0.91031 0.89270 0.91437 0.90050 0.91436 0.89304 0.91023 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.06 8.85 59.85 0.53 3.59 16 2 N -0.41 -11.10 3.02 -123.42 -0.37 -11.48 16 3 C -0.33 -8.97 9.34 -14.98 -0.14 -9.11 16 4 H 0.15 4.03 4.02 -80.63 -0.32 3.70 16 5 C 0.03 0.73 5.46 -17.46 -0.10 0.63 16 6 N -0.88 -23.44 9.45 55.50 0.52 -22.91 16 7 Si 0.93 21.02 29.56 -169.99 -5.02 16.00 16 8 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 9 H -0.29 -6.30 7.11 56.52 0.40 -5.89 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 C 0.50 12.75 7.62 -12.51 -0.10 12.66 16 12 O -0.62 -16.54 16.23 5.26 0.09 -16.46 16 13 C -0.04 -0.84 6.74 -83.55 -0.56 -1.41 16 14 C 0.06 0.98 11.28 -16.80 -0.19 0.79 16 15 N -0.37 -5.32 3.69 -61.03 -0.23 -5.55 16 16 C 0.12 0.98 6.65 -4.04 -0.03 0.95 16 17 C 0.13 1.18 5.88 -4.04 -0.02 1.16 16 18 N -0.71 -5.63 5.56 -65.28 -0.36 -5.99 16 19 C 0.65 6.98 8.06 54.06 0.44 7.42 16 20 O -0.56 -7.66 11.88 -19.28 -0.23 -7.89 16 21 O -0.36 -3.42 9.94 -40.32 -0.40 -3.82 16 22 C 0.14 1.10 1.13 -90.62 -0.10 0.99 16 23 C -0.18 -1.52 8.37 37.16 0.31 -1.21 16 24 C -0.14 -0.75 8.85 37.15 0.33 -0.42 16 25 C -0.18 -1.50 8.37 37.16 0.31 -1.19 16 26 N -0.09 -1.71 13.64 60.35 0.82 -0.89 16 27 N -0.19 -4.13 8.72 32.84 0.29 -3.84 16 28 H 0.04 0.91 6.94 -51.93 -0.36 0.55 16 29 H 0.07 1.88 7.00 -51.93 -0.36 1.51 16 30 H 0.07 1.75 7.10 -51.93 -0.37 1.38 16 31 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.20 2.53 8.06 -52.49 -0.42 2.11 16 33 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.11 0.53 8.08 -51.93 -0.42 0.11 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.41 1.93 8.58 -40.82 -0.35 1.58 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.97 5.88 -51.93 -0.31 0.67 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.09 0.96 5.88 -51.93 -0.31 0.65 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 380.90 15.07 5.74 5.74 Total: -1.00 -34.55 380.90 -5.06 -39.61 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.58 Total: 2.64 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 0.68 Total: 14.85 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.67 Total: -50.66 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.54 Total: -28.17 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.55 -5.06 -39.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824863770.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.876 kcal (2) G-P(sol) polarization free energy of solvation -34.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds