Wall clock time and date at job start Tue Mar 31 2020 22:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47008 * 2 1 4 4 N 1.46899 * 109.46723 * 119.99533 * 2 1 3 5 5 C 1.46894 * 111.00212 * 305.61869 * 4 2 1 6 6 C 1.50696 * 109.47435 * 286.57494 * 5 4 2 7 7 H 1.08005 * 119.99940 * 354.68021 * 6 5 4 8 8 C 1.37880 * 120.00331 * 174.68128 * 6 5 4 9 9 N 1.31514 * 119.99649 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00229 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46948 * 59.99914 * 10 8 6 12 12 H 1.48501 * 109.47286 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47163 * 300.00039 * 10 8 6 14 14 C 1.46899 * 110.99919 * 69.57686 * 4 2 1 15 15 N 1.46508 * 109.47269 * 84.91256 * 14 4 2 16 16 N 1.28313 * 118.93972 * 75.65009 * 15 14 4 17 17 C 1.31554 * 122.32153 * 179.72522 * 16 15 14 18 18 C 1.41298 * 119.52720 * 359.97438 * 17 16 15 19 19 C 1.35819 * 119.16509 * 359.97438 * 18 17 16 20 20 C 1.34631 * 118.93667 * 255.37770 * 15 14 4 21 21 O 1.22049 * 120.37536 * 0.25224 * 20 15 14 22 22 C 1.50565 * 107.49739 * 180.02562 * 18 17 16 23 23 C 1.50975 * 106.08872 * 359.97438 * 22 18 17 24 24 C 1.37954 * 131.88750 * 180.02562 * 23 22 18 25 25 C 1.38327 * 120.08122 * 180.02562 * 24 23 22 26 26 C 1.38355 * 120.10371 * 0.02562 * 25 24 23 27 27 C 1.37905 * 120.23265 * 359.93552 * 26 25 24 28 28 C 1.39210 * 107.88366 * 0.02562 * 23 22 18 29 29 H 1.09002 * 109.47198 * 308.95234 * 1 2 3 30 30 H 1.08998 * 109.46885 * 68.94842 * 1 2 3 31 31 H 1.08998 * 109.47084 * 188.95004 * 1 2 3 32 32 H 1.08999 * 109.47011 * 239.99608 * 2 1 3 33 33 H 1.09006 * 109.47179 * 170.64569 * 3 2 1 34 34 H 1.09006 * 109.47137 * 290.63844 * 3 2 1 35 35 H 1.08999 * 109.47906 * 50.64018 * 3 2 1 36 36 H 1.09000 * 109.46889 * 46.57964 * 5 4 2 37 37 H 1.09008 * 109.47269 * 166.57702 * 5 4 2 38 38 H 0.97002 * 120.00125 * 180.02562 * 9 8 6 39 39 H 1.08995 * 109.47182 * 324.91375 * 14 4 2 40 40 H 1.09006 * 109.47209 * 204.90712 * 14 4 2 41 41 H 1.07997 * 121.19166 * 179.97438 * 19 18 17 42 42 H 1.08999 * 110.12801 * 240.84462 * 22 18 17 43 43 H 1.08998 * 110.18757 * 119.18485 * 22 18 17 44 44 H 1.07994 * 119.95880 * 359.97438 * 24 23 22 45 45 H 1.07998 * 119.95111 * 180.02562 * 25 24 23 46 46 H 1.07997 * 119.88210 * 179.97438 * 26 25 24 47 47 H 1.07999 * 120.00677 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.4421 -0.1081 2.4172 6 6 2.0824 1.2295 2.6852 7 1 2.9013 1.5694 2.0685 8 6 1.6228 2.0194 3.7176 9 7 0.6260 1.6053 4.4688 10 14 2.4160 3.6777 4.0492 11 1 2.2790 4.5409 2.8486 12 1 1.7445 4.3255 5.2045 13 1 3.8556 3.4849 4.3585 14 6 1.7439 -2.1334 1.1250 15 7 2.8153 -2.7977 0.3785 16 7 3.9468 -2.9875 0.9529 17 6 4.9523 -3.5813 0.3472 18 6 4.7959 -4.0321 -0.9828 19 6 3.6064 -3.8428 -1.6103 20 6 2.5790 -3.1943 -0.8862 21 8 1.4901 -2.9979 -1.4013 22 6 6.0970 -4.6626 -1.4030 23 6 7.0223 -4.5435 -0.2160 24 6 8.3291 -4.9414 -0.0232 25 6 8.9542 -4.7053 1.1880 26 6 8.2707 -4.0701 2.2095 27 6 6.9644 -3.6680 2.0258 28 6 6.3268 -3.9027 0.8056 29 1 -0.3634 0.6461 0.7992 30 1 -0.3633 0.3691 -0.9591 31 1 -0.3633 -1.0151 0.1599 32 1 1.8934 -0.5139 -0.8899 33 1 3.1172 1.4471 0.1670 34 1 1.8196 1.9058 -0.9618 35 1 1.5468 2.0024 0.7945 36 1 0.3684 0.0233 2.2832 37 1 1.6241 -0.7736 3.2612 38 1 0.3023 2.1611 5.1949 39 1 0.7930 -2.2955 0.6175 40 1 1.6932 -2.5462 2.1325 41 1 3.4511 -4.1739 -2.6265 42 1 6.5134 -4.1295 -2.2577 43 1 5.9426 -5.7118 -1.6549 44 1 8.8644 -5.4385 -0.8186 45 1 9.9774 -5.0173 1.3365 46 1 8.7621 -3.8880 3.1538 47 1 6.4344 -3.1721 2.8256 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839977374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:41 Heat of formation + Delta-G solvation = 82.926969 kcal Electronic energy + Delta-G solvation = -29578.576502 eV Core-core repulsion = 25728.404714 eV Total energy + Delta-G solvation = -3850.171788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.08848 -40.01755 -37.82175 -37.45705 -35.91500 -32.73802 -32.28422 -31.89377 -30.93690 -29.86804 -27.87625 -27.48196 -26.23708 -25.46095 -24.24558 -22.43661 -22.15044 -21.99516 -21.25441 -18.98985 -18.26601 -17.48841 -16.63723 -16.57039 -16.21695 -15.50460 -15.25787 -15.17285 -14.99986 -14.76678 -14.49794 -14.01597 -13.86181 -13.54629 -13.36386 -13.10386 -13.05678 -12.81537 -12.46299 -12.39600 -12.25396 -11.77638 -11.67798 -11.37660 -11.23738 -11.11495 -10.99549 -10.92036 -10.81882 -10.71242 -10.39361 -10.29522 -10.14159 -9.58333 -9.45462 -9.31695 -9.10595 -8.96471 -8.42133 -7.95186 -7.45072 -6.05002 -4.02027 0.51728 0.82989 1.18968 2.01795 2.36226 3.32033 3.35132 3.36581 3.39776 3.78087 3.81408 4.00037 4.37441 4.39885 4.48530 4.73032 4.82110 4.85967 4.93734 5.17482 5.22036 5.28696 5.29919 5.41675 5.47920 5.59796 5.65538 5.69740 5.70966 5.71517 5.78954 5.87252 6.00263 6.10052 6.15519 6.22635 6.34939 6.35896 6.41276 6.51975 6.56553 6.72601 6.74499 6.93193 7.07813 7.32949 7.42821 7.71860 7.80865 7.97793 8.06775 8.39184 8.43612 9.01035 9.57407 11.05449 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011294 B = 0.003593 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.658031 B = 7791.929282 C = 9570.898933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.092 3.908 3 C -0.141 4.141 4 N -0.536 5.536 5 C 0.192 3.808 6 C -0.501 4.501 7 H 0.072 0.928 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.262 3.738 15 N -0.315 5.315 16 N -0.161 5.161 17 C 0.057 3.943 18 C -0.040 4.040 19 C -0.189 4.189 20 C 0.481 3.519 21 O -0.533 6.533 22 C -0.042 4.042 23 C -0.087 4.087 24 C -0.102 4.102 25 C -0.111 4.111 26 C -0.119 4.119 27 C -0.079 4.079 28 C -0.021 4.021 29 H 0.073 0.927 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.029 0.971 35 H 0.096 0.904 36 H 0.015 0.985 37 H 0.027 0.973 38 H 0.262 0.738 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.160 0.840 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.128 0.872 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.464 -14.565 -9.671 22.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.017 4.017 3 C -0.198 4.198 4 N -0.261 5.261 5 C 0.068 3.932 6 C -0.539 4.539 7 H 0.090 0.910 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.722 3.278 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.202 1.202 14 C 0.053 3.947 15 N -0.137 5.137 16 N 0.014 4.986 17 C -0.109 4.109 18 C -0.046 4.046 19 C -0.219 4.219 20 C 0.280 3.720 21 O -0.412 6.412 22 C -0.078 4.078 23 C -0.089 4.089 24 C -0.120 4.120 25 C -0.130 4.130 26 C -0.137 4.137 27 C -0.098 4.098 28 C -0.023 4.023 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.115 0.885 36 H 0.033 0.967 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.112 0.888 40 H 0.121 0.879 41 H 0.177 0.823 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.144 0.856 45 H 0.145 0.855 46 H 0.146 0.854 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 12.808 -13.860 -8.966 20.893 hybrid contribution -0.342 0.543 -0.502 0.815 sum 12.466 -13.316 -9.468 20.551 Atomic orbital electron populations 1.22405 0.97948 1.01358 1.01953 1.21482 0.92547 0.95969 0.91661 1.22191 1.01687 0.95172 1.00753 1.61973 1.60139 0.98732 1.05260 1.19881 0.94228 0.95094 0.83984 1.21269 1.17137 1.01343 1.14183 0.90951 1.24951 0.95260 0.98405 0.96014 1.69937 1.26425 1.37922 1.19578 0.86615 0.79560 0.83888 0.77731 1.20213 1.21423 1.20216 1.22572 0.85419 0.90074 0.96659 1.47228 1.09349 1.44860 1.12274 1.70708 0.92198 1.06946 1.28770 1.20430 0.93674 1.03813 0.93029 1.21163 0.95283 0.93689 0.94470 1.21842 0.91990 1.05416 1.02650 1.17926 0.90100 0.81880 0.82139 1.90970 1.24834 1.57944 1.67450 1.19483 0.89233 1.02043 0.97058 1.20147 0.94393 0.99178 0.95173 1.20323 0.92800 1.01002 0.97901 1.21160 0.99905 0.98853 0.93066 1.21073 0.94225 0.98881 0.99504 1.21058 0.94552 0.97995 0.96207 1.18444 0.89313 0.99695 0.94855 0.90827 0.93238 0.93515 0.92712 0.92861 0.95201 0.88532 0.96716 0.95511 0.92879 0.88837 0.87922 0.82265 0.87411 0.87440 0.85591 0.85528 0.85375 0.84929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.45 8.32 37.16 0.31 -3.14 16 2 C 0.09 1.89 2.90 -67.71 -0.20 1.69 16 3 C -0.14 -2.91 7.70 37.16 0.29 -2.63 16 4 N -0.54 -11.56 4.59 -231.97 -1.06 -12.62 16 5 C 0.19 4.74 4.47 -4.98 -0.02 4.72 16 6 C -0.50 -13.31 6.52 -34.44 -0.22 -13.54 16 7 H 0.07 1.93 5.61 -52.48 -0.29 1.63 16 8 C 0.05 1.49 5.46 -17.82 -0.10 1.40 16 9 N -0.90 -25.73 13.29 55.43 0.74 -24.99 16 10 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.26 5.03 5.45 -63.31 -0.35 4.68 16 15 N -0.32 -5.70 3.46 -66.28 -0.23 -5.93 16 16 N -0.16 -2.83 10.94 33.51 0.37 -2.46 16 17 C 0.06 0.85 7.46 -82.63 -0.62 0.23 16 18 C -0.04 -0.50 6.33 -104.39 -0.66 -1.16 16 19 C -0.19 -2.57 10.12 -39.23 -0.40 -2.97 16 20 C 0.48 8.39 7.00 -15.11 -0.11 8.29 16 21 O -0.53 -10.51 15.90 4.87 0.08 -10.44 16 22 C -0.04 -0.35 6.70 -28.97 -0.19 -0.55 16 23 C -0.09 -0.86 6.29 -104.23 -0.66 -1.51 16 24 C -0.10 -0.81 10.03 -39.65 -0.40 -1.21 16 25 C -0.11 -0.87 10.05 -39.51 -0.40 -1.27 16 26 C -0.12 -1.09 10.02 -39.66 -0.40 -1.49 16 27 C -0.08 -0.92 10.09 -39.17 -0.40 -1.32 16 28 C -0.02 -0.27 6.19 -104.81 -0.65 -0.92 16 29 H 0.07 1.55 6.50 -51.93 -0.34 1.22 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.88 6.22 -51.93 -0.32 0.56 16 32 H 0.05 1.14 7.02 -51.93 -0.36 0.78 16 33 H 0.05 1.13 7.35 -51.93 -0.38 0.75 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.10 2.22 5.61 -51.93 -0.29 1.93 16 36 H 0.02 0.39 5.70 -51.93 -0.30 0.09 16 37 H 0.03 0.70 7.58 -51.92 -0.39 0.31 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.09 1.78 4.81 -51.93 -0.25 1.53 16 40 H 0.10 1.90 7.46 -51.93 -0.39 1.51 16 41 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 42 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 46 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 47 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 375.17 15.07 5.65 5.65 Total: -1.00 -31.33 375.17 -10.90 -42.23 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.26 Total: 3.06 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -5.16 Total: -10.69 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: -0.19 Total: -46.01 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.33 -10.90 -42.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839977374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.158 kcal (2) G-P(sol) polarization free energy of solvation -31.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds