Wall clock time and date at job start Tue Mar 31 2020 22:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47008 * 2 1 4 4 N 1.46899 * 109.46723 * 119.99533 * 2 1 3 5 5 C 1.46894 * 111.00212 * 305.61869 * 4 2 1 6 6 C 1.50696 * 109.47435 * 286.57494 * 5 4 2 7 7 H 1.08005 * 119.99940 * 354.68021 * 6 5 4 8 8 C 1.37880 * 120.00331 * 174.68128 * 6 5 4 9 9 N 1.31514 * 119.99649 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00229 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46948 * 59.99914 * 10 8 6 12 12 H 1.48501 * 109.47286 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47163 * 300.00039 * 10 8 6 14 14 C 1.46899 * 110.99919 * 69.57686 * 4 2 1 15 15 N 1.46508 * 109.47269 * 84.91256 * 14 4 2 16 16 N 1.28313 * 118.93972 * 75.65009 * 15 14 4 17 17 C 1.31554 * 122.32153 * 179.72522 * 16 15 14 18 18 C 1.41298 * 119.52720 * 359.97438 * 17 16 15 19 19 C 1.35819 * 119.16509 * 359.97438 * 18 17 16 20 20 C 1.34631 * 118.93667 * 255.37770 * 15 14 4 21 21 O 1.22049 * 120.37536 * 0.25224 * 20 15 14 22 22 C 1.50565 * 107.49739 * 180.02562 * 18 17 16 23 23 C 1.50975 * 106.08872 * 359.97438 * 22 18 17 24 24 C 1.37954 * 131.88750 * 180.02562 * 23 22 18 25 25 C 1.38327 * 120.08122 * 180.02562 * 24 23 22 26 26 C 1.38355 * 120.10371 * 0.02562 * 25 24 23 27 27 C 1.37905 * 120.23265 * 359.93552 * 26 25 24 28 28 C 1.39210 * 107.88366 * 0.02562 * 23 22 18 29 29 H 1.09002 * 109.47198 * 308.95234 * 1 2 3 30 30 H 1.08998 * 109.46885 * 68.94842 * 1 2 3 31 31 H 1.08998 * 109.47084 * 188.95004 * 1 2 3 32 32 H 1.08999 * 109.47011 * 239.99608 * 2 1 3 33 33 H 1.09006 * 109.47179 * 170.64569 * 3 2 1 34 34 H 1.09006 * 109.47137 * 290.63844 * 3 2 1 35 35 H 1.08999 * 109.47906 * 50.64018 * 3 2 1 36 36 H 1.09000 * 109.46889 * 46.57964 * 5 4 2 37 37 H 1.09008 * 109.47269 * 166.57702 * 5 4 2 38 38 H 0.97002 * 120.00125 * 180.02562 * 9 8 6 39 39 H 1.08995 * 109.47182 * 324.91375 * 14 4 2 40 40 H 1.09006 * 109.47209 * 204.90712 * 14 4 2 41 41 H 1.07997 * 121.19166 * 179.97438 * 19 18 17 42 42 H 1.08999 * 110.12801 * 240.84462 * 22 18 17 43 43 H 1.08998 * 110.18757 * 119.18485 * 22 18 17 44 44 H 1.07994 * 119.95880 * 359.97438 * 24 23 22 45 45 H 1.07998 * 119.95111 * 180.02562 * 25 24 23 46 46 H 1.07997 * 119.88210 * 179.97438 * 26 25 24 47 47 H 1.07999 * 120.00677 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.4421 -0.1081 2.4172 6 6 2.0824 1.2295 2.6852 7 1 2.9013 1.5694 2.0685 8 6 1.6228 2.0194 3.7176 9 7 0.6260 1.6053 4.4688 10 14 2.4160 3.6777 4.0492 11 1 2.2790 4.5409 2.8486 12 1 1.7445 4.3255 5.2045 13 1 3.8556 3.4849 4.3585 14 6 1.7439 -2.1334 1.1250 15 7 2.8153 -2.7977 0.3785 16 7 3.9468 -2.9875 0.9529 17 6 4.9523 -3.5813 0.3472 18 6 4.7959 -4.0321 -0.9828 19 6 3.6064 -3.8428 -1.6103 20 6 2.5790 -3.1943 -0.8862 21 8 1.4901 -2.9979 -1.4013 22 6 6.0970 -4.6626 -1.4030 23 6 7.0223 -4.5435 -0.2160 24 6 8.3291 -4.9414 -0.0232 25 6 8.9542 -4.7053 1.1880 26 6 8.2707 -4.0701 2.2095 27 6 6.9644 -3.6680 2.0258 28 6 6.3268 -3.9027 0.8056 29 1 -0.3634 0.6461 0.7992 30 1 -0.3633 0.3691 -0.9591 31 1 -0.3633 -1.0151 0.1599 32 1 1.8934 -0.5139 -0.8899 33 1 3.1172 1.4471 0.1670 34 1 1.8196 1.9058 -0.9618 35 1 1.5468 2.0024 0.7945 36 1 0.3684 0.0233 2.2832 37 1 1.6241 -0.7736 3.2612 38 1 0.3023 2.1611 5.1949 39 1 0.7930 -2.2955 0.6175 40 1 1.6932 -2.5462 2.1325 41 1 3.4511 -4.1739 -2.6265 42 1 6.5134 -4.1295 -2.2577 43 1 5.9426 -5.7118 -1.6549 44 1 8.8644 -5.4385 -0.8186 45 1 9.9774 -5.0173 1.3365 46 1 8.7621 -3.8880 3.1538 47 1 6.4344 -3.1721 2.8256 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839977374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:40 Heat of formation + Delta-G solvation = 64.443899 kcal Electronic energy + Delta-G solvation = -29579.377988 eV Core-core repulsion = 25728.404714 eV Total energy + Delta-G solvation = -3850.973274 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.27518 -40.95031 -39.42706 -38.72335 -36.93349 -34.74117 -33.52338 -32.89475 -32.17981 -31.17284 -29.51414 -28.50003 -27.91181 -26.70421 -25.61252 -24.28692 -23.39186 -22.88394 -22.02090 -20.67608 -19.36231 -18.91970 -18.20989 -17.92587 -17.64465 -16.76380 -16.57406 -16.43875 -16.19958 -15.85799 -15.73484 -15.36575 -15.05057 -14.92730 -14.40061 -14.29622 -14.10920 -14.04373 -14.01925 -13.82107 -13.35588 -13.18015 -13.14477 -13.08858 -12.71151 -12.66437 -12.54147 -12.45176 -12.27291 -12.09649 -12.03839 -11.76662 -11.52478 -11.23437 -11.10007 -10.70602 -10.53174 -10.27017 -9.67298 -9.26052 -9.03980 -8.16247 -6.19490 -0.55204 -0.11090 0.47740 0.98613 1.08031 1.41331 1.42874 1.50504 2.26320 2.41696 2.75585 2.94079 3.01133 3.16143 3.21915 3.47034 3.54994 3.83032 3.92437 4.02664 4.09016 4.17517 4.21722 4.28539 4.37925 4.44438 4.51964 4.60010 4.65025 4.68899 4.72448 4.74294 4.81982 4.85856 4.95232 4.97523 5.02031 5.03022 5.12192 5.18327 5.25539 5.43080 5.52276 5.60566 5.61545 5.63117 5.70436 6.03144 6.05876 6.19958 6.41745 6.53054 6.88296 7.16868 7.43551 8.94177 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011294 B = 0.003593 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.658031 B = 7791.929282 C = 9570.898933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.094 3.906 3 C -0.132 4.132 4 N -0.543 5.543 5 C 0.209 3.791 6 C -0.505 4.505 7 H 0.070 0.930 8 C 0.006 3.994 9 N -0.933 5.933 10 Si 0.956 3.044 11 H -0.267 1.267 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.271 3.729 15 N -0.327 5.327 16 N -0.218 5.218 17 C 0.066 3.934 18 C -0.031 4.031 19 C -0.188 4.188 20 C 0.467 3.533 21 O -0.570 6.570 22 C -0.034 4.034 23 C -0.078 4.078 24 C -0.096 4.096 25 C -0.098 4.098 26 C -0.126 4.126 27 C -0.099 4.099 28 C -0.067 4.067 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.041 0.959 34 H 0.057 0.943 35 H 0.072 0.928 36 H -0.001 1.001 37 H 0.002 0.998 38 H 0.262 0.738 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.192 0.808 42 H 0.139 0.861 43 H 0.144 0.856 44 H 0.166 0.834 45 H 0.162 0.838 46 H 0.145 0.855 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.251 -15.953 -12.195 26.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.014 4.014 3 C -0.189 4.189 4 N -0.268 5.268 5 C 0.084 3.916 6 C -0.543 4.543 7 H 0.088 0.912 8 C -0.191 4.191 9 N -0.574 5.574 10 Si 0.782 3.218 11 H -0.192 1.192 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.060 3.940 15 N -0.147 5.147 16 N -0.041 5.041 17 C -0.102 4.102 18 C -0.037 4.037 19 C -0.217 4.217 20 C 0.267 3.733 21 O -0.452 6.452 22 C -0.070 4.070 23 C -0.081 4.081 24 C -0.114 4.114 25 C -0.116 4.116 26 C -0.144 4.144 27 C -0.119 4.119 28 C -0.069 4.069 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.017 0.983 37 H 0.020 0.980 38 H 0.071 0.929 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.209 0.791 42 H 0.157 0.843 43 H 0.161 0.839 44 H 0.184 0.816 45 H 0.180 0.820 46 H 0.162 0.838 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 16.619 -15.261 -11.494 25.322 hybrid contribution -1.267 0.813 0.292 1.533 sum 15.352 -14.448 -11.202 23.873 Atomic orbital electron populations 1.22271 0.97109 1.00960 1.02230 1.21477 0.93190 0.95752 0.90998 1.22042 1.00513 0.95014 1.01337 1.61882 1.60291 1.00141 1.04509 1.19513 0.93236 0.94220 0.84653 1.21489 1.16852 1.01980 1.14005 0.91227 1.25717 0.95735 1.01867 0.95822 1.70059 1.27834 1.39299 1.20204 0.85628 0.78577 0.79806 0.77816 1.19199 1.21085 1.19866 1.22320 0.86328 0.88628 0.96678 1.46858 1.09486 1.45782 1.12555 1.70672 0.92915 1.10399 1.30164 1.21252 0.93709 1.00924 0.94282 1.21581 0.96578 0.92504 0.93006 1.21992 0.91168 1.04913 1.03613 1.18545 0.90759 0.82052 0.81921 1.90931 1.26274 1.59966 1.68066 1.19673 0.86226 1.03978 0.97126 1.20450 0.95154 0.97928 0.94523 1.20788 0.91850 0.99891 0.98863 1.21646 1.01184 0.96557 0.92252 1.21329 0.93161 0.98837 1.01050 1.21099 0.95948 0.99045 0.95832 1.18670 0.88808 1.02854 0.96580 0.92962 0.91075 0.93538 0.92698 0.93975 0.92411 0.90965 0.98337 0.98038 0.92880 0.89090 0.88602 0.79067 0.84300 0.83871 0.81636 0.82045 0.83757 0.87223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.70 8.32 71.98 0.60 -6.10 16 2 C 0.09 3.99 2.90 44.92 0.13 4.12 16 3 C -0.13 -5.53 7.70 71.98 0.55 -4.98 16 4 N -0.54 -24.88 4.59 -887.81 -4.08 -28.95 16 5 C 0.21 11.00 4.47 85.56 0.38 11.39 16 6 C -0.50 -27.96 6.52 25.60 0.17 -27.79 16 7 H 0.07 3.83 5.61 -2.91 -0.02 3.82 16 8 C 0.01 0.36 5.46 84.66 0.46 0.82 16 9 N -0.93 -55.32 13.29 21.45 0.28 -55.03 16 10 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 14 C 0.27 11.21 5.45 170.80 0.93 12.14 16 15 N -0.33 -12.51 3.46 -481.75 -1.67 -14.18 16 16 N -0.22 -8.13 10.94 -47.91 -0.52 -8.66 16 17 C 0.07 1.98 7.46 42.65 0.32 2.29 16 18 C -0.03 -0.70 6.33 -19.72 -0.12 -0.83 16 19 C -0.19 -4.84 10.12 22.50 0.23 -4.61 16 20 C 0.47 16.69 7.00 85.05 0.60 17.29 16 21 O -0.57 -23.18 15.90 -5.48 -0.09 -23.27 16 22 C -0.03 -0.42 6.70 29.15 0.20 -0.22 16 23 C -0.08 -1.26 6.29 -19.61 -0.12 -1.38 16 24 C -0.10 -1.02 10.03 22.22 0.22 -0.80 16 25 C -0.10 -1.10 10.05 22.32 0.22 -0.87 16 26 C -0.13 -2.07 10.02 22.22 0.22 -1.84 16 27 C -0.10 -2.36 10.09 22.54 0.23 -2.13 16 28 C -0.07 -1.64 6.19 -19.99 -0.12 -1.77 16 29 H 0.05 2.31 6.50 -2.39 -0.02 2.29 16 30 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.05 1.84 6.22 -2.39 -0.01 1.82 16 32 H 0.05 2.35 7.02 -2.39 -0.02 2.33 16 33 H 0.04 1.82 7.35 -2.38 -0.02 1.80 16 34 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.07 3.40 5.61 -2.39 -0.01 3.39 16 36 H 0.00 -0.06 5.70 -2.39 -0.01 -0.07 16 37 H 0.00 0.09 7.58 -2.38 -0.02 0.07 16 38 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 39 H 0.09 3.75 4.81 -2.39 -0.01 3.74 16 40 H 0.10 3.95 7.46 -2.38 -0.02 3.94 16 41 H 0.19 3.55 8.06 -2.91 -0.02 3.53 16 42 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.17 0.53 8.06 -2.91 -0.02 0.51 16 45 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 46 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 47 H 0.11 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -73.31 375.17 2.05 -71.27 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 1.00 Total: 17.75 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 5.09 Total: -5.28 kcal Atomic # 7 Polarization: -100.84 SS G_CDS: -5.98 Total: -106.82 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.09 Total: -23.27 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -73.31 2.05 -71.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839977374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.712 kcal (2) G-P(sol) polarization free energy of solvation -73.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds