Wall clock time and date at job start Tue Mar 31 2020 23:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.39130 * 2 1 4 4 C 1.53025 * 109.42779 * 240.12490 * 2 1 3 5 5 C 1.53376 * 109.75322 * 168.21917 * 4 2 1 6 6 C 1.50948 * 108.20573 * 50.66895 * 5 4 2 7 7 N 1.30127 * 128.28979 * 163.23773 * 6 5 4 8 8 N 1.40315 * 108.12218 * 180.14933 * 7 6 5 9 9 H 0.96994 * 125.99920 * 179.97438 * 8 7 6 10 10 C 1.35193 * 107.99340 * 359.95861 * 8 7 6 11 11 C 1.34575 * 107.61865 * 359.96489 * 10 8 7 12 12 C 1.50881 * 128.32630 * 180.11389 * 11 10 8 13 13 H 1.08990 * 109.75761 * 283.04865 * 12 11 10 14 14 C 1.50706 * 109.71794 * 43.68052 * 12 11 10 15 15 O 1.21281 * 119.99995 * 118.73534 * 14 12 11 16 16 N 1.34776 * 119.99477 * 298.73610 * 14 12 11 17 17 C 1.46502 * 119.99734 * 180.02562 * 16 14 12 18 18 C 1.50704 * 109.47126 * 179.97438 * 17 16 14 19 19 C 1.38632 * 119.74793 * 90.00351 * 18 17 16 20 20 C 1.37613 * 120.24710 * 179.97438 * 19 18 17 21 21 C 1.40717 * 119.74828 * 359.97438 * 20 19 18 22 22 C 1.41393 * 120.24573 * 179.97438 * 21 20 19 23 23 H 1.07993 * 120.00018 * 204.33429 * 22 21 20 24 24 C 1.39948 * 119.99688 * 24.34122 * 22 21 20 25 25 N 1.30819 * 120.00393 * 17.81430 * 24 22 21 26 26 Si 1.86804 * 119.99775 * 197.81417 * 24 22 21 27 27 H 1.48497 * 109.46935 * 59.99824 * 26 24 22 28 28 H 1.48494 * 109.47138 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47060 * 300.00237 * 26 24 22 30 30 C 1.40713 * 119.50688 * 359.97438 * 21 20 19 31 31 C 1.37613 * 119.74933 * 0.04016 * 30 21 20 32 32 H 1.08997 * 109.46943 * 300.13548 * 1 2 3 33 33 H 1.09001 * 109.47141 * 60.12720 * 1 2 3 34 34 H 1.08999 * 109.47690 * 180.12950 * 1 2 3 35 35 H 1.08994 * 109.43003 * 288.30908 * 4 2 1 36 36 H 1.09004 * 109.42486 * 48.19432 * 4 2 1 37 37 H 1.09004 * 109.71369 * 170.34610 * 5 4 2 38 38 H 1.08997 * 109.71725 * 290.94429 * 5 4 2 39 39 H 1.08003 * 126.19146 * 179.97438 * 10 8 7 40 40 H 0.96997 * 120.00273 * 359.97438 * 16 14 12 41 41 H 1.09004 * 109.47006 * 59.99786 * 17 16 14 42 42 H 1.08998 * 109.47287 * 300.00130 * 17 16 14 43 43 H 1.08002 * 119.87537 * 359.95346 * 19 18 17 44 44 H 1.08008 * 120.12247 * 179.71760 * 20 19 18 45 45 H 0.97001 * 119.99946 * 179.97438 * 25 24 22 46 46 H 1.08003 * 120.12520 * 180.02562 * 30 21 20 47 47 H 1.08000 * 119.87962 * 179.97438 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8918 1.0281 0.0000 4 6 2.0389 -0.7188 -1.2513 5 6 3.5440 -0.4727 -1.4145 6 6 4.2194 -0.7949 -0.1036 7 7 5.4827 -1.0122 0.1206 8 7 5.6440 -1.2754 1.4894 9 1 6.4816 -1.4724 1.9372 10 6 4.4272 -1.2059 2.0743 11 6 3.5306 -0.9098 1.1155 12 6 2.0402 -0.7205 1.2543 13 1 1.5524 -1.6910 1.3451 14 6 1.7450 0.1129 2.4748 15 8 1.1814 1.1805 2.3582 16 7 2.1074 -0.3282 3.6957 17 6 1.8201 0.4817 4.8822 18 6 2.3230 -0.2312 6.1109 19 6 3.6172 -0.0073 6.5548 20 6 4.0869 -0.6524 7.6759 21 6 3.2479 -1.5417 8.3727 22 6 3.7199 -2.2106 9.5255 23 1 3.2715 -3.1450 9.8292 24 6 4.7679 -1.6617 10.2731 25 7 5.0792 -0.3987 10.1339 26 14 5.7222 -2.7325 11.4699 27 1 6.3567 -3.8545 10.7325 28 1 6.7732 -1.9190 12.1323 29 1 4.7957 -3.2754 12.4956 30 6 1.9359 -1.7604 7.9136 31 6 1.4875 -1.1046 6.7899 32 1 -0.3633 0.5159 0.8888 33 1 -0.3633 0.5119 -0.8911 34 1 -0.3634 -1.0276 0.0023 35 1 1.8550 -1.7888 -1.1549 36 1 1.5133 -0.3382 -2.1271 37 1 3.9390 -1.1171 -2.1999 38 1 3.7200 0.5716 -1.6726 39 1 4.2133 -1.3600 3.1217 40 1 2.5579 -1.1821 3.7889 41 1 0.7440 0.6344 4.9659 42 1 2.3180 1.4472 4.7924 43 1 4.2592 0.6757 6.0184 44 1 5.0969 -0.4800 8.0173 45 1 5.8054 -0.0182 10.6524 46 1 1.2834 -2.4405 8.4409 47 1 0.4810 -1.2712 6.4355 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880399707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:12 Heat of formation + Delta-G solvation = 33.278714 kcal Electronic energy + Delta-G solvation = -28818.374288 eV Core-core repulsion = 24966.049589 eV Total energy + Delta-G solvation = -3852.324698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.75701 -39.52421 -37.83968 -36.83191 -34.74949 -33.54173 -32.70936 -31.39491 -30.15611 -29.71506 -29.41334 -27.30560 -26.31601 -24.26122 -23.66349 -21.59598 -21.13264 -20.89913 -20.29891 -19.97637 -18.96633 -17.83109 -17.44794 -16.92295 -15.69579 -15.44996 -15.21516 -14.99867 -14.79400 -14.33925 -14.25745 -14.05641 -13.84755 -13.60519 -13.32784 -13.02558 -12.86508 -12.61535 -12.43537 -12.11686 -12.10196 -11.83357 -11.67155 -11.63073 -11.25147 -11.19741 -11.17224 -10.97677 -10.69263 -10.65617 -10.62674 -10.54861 -9.80485 -9.59481 -9.53263 -9.50011 -9.27137 -8.66031 -8.52591 -7.63761 -7.50947 -6.92148 -4.52146 1.78858 2.47452 2.56809 2.71921 2.91788 2.97286 2.97829 2.99361 3.03942 3.69861 3.80528 4.26489 4.47538 4.57394 4.65265 4.79232 4.92390 5.12970 5.22208 5.30930 5.36130 5.44920 5.53852 5.56600 5.64627 5.72998 5.78937 5.80662 5.86684 5.89003 5.93003 6.06737 6.19117 6.26147 6.29674 6.35575 6.37057 6.49283 6.80947 6.82376 6.92318 7.12370 7.16742 7.20597 7.44958 7.55387 7.64362 7.88879 7.89683 7.95762 8.13634 8.47527 8.51837 8.73023 8.80580 10.01681 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016793 B = 0.002598 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.913118 B =10776.871774 C =11905.799091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.069 4.069 3 H 0.082 0.918 4 C -0.111 4.111 5 C -0.040 4.040 6 C 0.090 3.910 7 N -0.291 5.291 8 N -0.479 5.479 9 H 0.441 0.559 10 C 0.074 3.926 11 C -0.235 4.235 12 C -0.023 4.023 13 H 0.100 0.900 14 C 0.517 3.483 15 O -0.544 6.544 16 N -0.720 5.720 17 C 0.183 3.817 18 C -0.246 4.246 19 C -0.083 4.083 20 C -0.170 4.170 21 C 0.117 3.883 22 C -0.459 4.459 23 H 0.079 0.921 24 C 0.076 3.924 25 N -0.786 5.786 26 Si 0.909 3.091 27 H -0.263 1.263 28 H -0.277 1.277 29 H -0.264 1.264 30 C -0.229 4.229 31 C -0.069 4.069 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.178 0.822 40 H 0.395 0.605 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.087 0.913 44 H 0.118 0.882 45 H 0.283 0.717 46 H 0.093 0.907 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.638 -2.447 -16.994 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.088 4.088 3 H 0.100 0.900 4 C -0.149 4.149 5 C -0.079 4.079 6 C -0.079 4.079 7 N -0.113 5.113 8 N -0.187 5.187 9 H 0.286 0.714 10 C -0.072 4.072 11 C -0.247 4.247 12 C -0.045 4.045 13 H 0.117 0.883 14 C 0.302 3.698 15 O -0.422 6.422 16 N -0.372 5.372 17 C 0.062 3.938 18 C -0.248 4.248 19 C -0.102 4.102 20 C -0.189 4.189 21 C 0.114 3.886 22 C -0.488 4.488 23 H 0.097 0.903 24 C -0.143 4.143 25 N -0.411 5.411 26 Si 0.733 3.267 27 H -0.187 1.187 28 H -0.202 1.202 29 H -0.189 1.189 30 C -0.249 4.249 31 C -0.088 4.088 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.195 0.805 40 H 0.231 0.769 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.105 0.895 44 H 0.135 0.865 45 H 0.094 0.906 46 H 0.111 0.889 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.728 -1.544 -17.451 17.534 hybrid contribution 0.473 -0.895 1.669 1.952 sum -0.256 -2.439 -15.782 15.972 Atomic orbital electron populations 1.21891 0.94465 1.01457 1.02875 1.20937 0.96052 0.99984 0.91796 0.89979 1.21665 0.93952 1.01221 0.98032 1.20156 0.94256 1.02384 0.91077 1.22294 0.90499 0.98611 0.96498 1.76988 1.18095 1.23277 0.92968 1.46311 1.08684 1.57574 1.06130 0.71424 1.22273 0.85535 1.00030 0.99410 1.19643 0.95509 1.16465 0.93039 1.19801 0.91247 0.99539 0.93927 0.88254 1.20508 0.78285 0.86526 0.84449 1.90645 1.42362 1.22780 1.86405 1.46657 1.60301 1.23870 1.06338 1.19942 0.99240 0.92817 0.81827 1.18991 0.96706 1.08363 1.00697 1.20548 0.94306 0.98644 0.96704 1.21302 1.00351 1.01805 0.95432 1.17661 0.89989 0.89791 0.91169 1.19633 1.14280 1.07114 1.07736 0.90301 1.25954 0.96249 0.94722 0.97387 1.69811 1.24531 1.11821 1.34923 0.86347 0.79477 0.80683 0.80171 1.18745 1.20236 1.18866 1.20970 0.96316 1.07034 1.00573 1.20412 0.96952 0.96097 0.95337 0.91016 0.92715 0.93164 0.91393 0.90621 0.89951 0.89743 0.80504 0.76949 0.92396 0.92416 0.89525 0.86462 0.90585 0.88908 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.95 37.15 0.33 -1.19 16 2 C -0.07 -0.73 1.77 -90.41 -0.16 -0.89 16 3 H 0.08 1.03 7.75 -51.93 -0.40 0.63 16 4 C -0.11 -0.91 5.17 -26.52 -0.14 -1.05 16 5 C -0.04 -0.36 6.31 -27.57 -0.17 -0.53 16 6 C 0.09 1.09 7.10 -82.35 -0.58 0.50 16 7 N -0.29 -3.81 12.68 33.75 0.43 -3.38 16 8 N -0.48 -5.43 7.37 30.35 0.22 -5.21 16 9 H 0.44 3.77 8.96 -182.44 -1.64 2.13 16 10 C 0.07 0.87 11.02 -17.37 -0.19 0.68 16 11 C -0.23 -2.86 5.41 -104.98 -0.57 -3.42 16 12 C -0.02 -0.27 2.33 -92.63 -0.22 -0.48 16 13 H 0.10 1.03 8.13 -51.93 -0.42 0.60 16 14 C 0.52 7.62 6.81 -10.98 -0.07 7.54 16 15 O -0.54 -9.71 14.29 5.56 0.08 -9.63 16 16 N -0.72 -10.53 4.95 -61.47 -0.30 -10.84 16 17 C 0.18 3.16 5.79 -5.19 -0.03 3.13 16 18 C -0.25 -4.82 5.27 -104.33 -0.55 -5.37 16 19 C -0.08 -1.75 9.67 -39.66 -0.38 -2.14 16 20 C -0.17 -4.06 8.69 -38.87 -0.34 -4.40 16 21 C 0.12 2.89 5.58 -106.83 -0.60 2.30 16 22 C -0.46 -11.45 9.06 -37.74 -0.34 -11.79 16 23 H 0.08 1.89 7.91 -52.49 -0.41 1.48 16 24 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 25 N -0.79 -19.32 10.95 55.55 0.61 -18.71 16 26 Si 0.91 17.66 29.60 -169.99 -5.03 12.62 16 27 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 28 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 29 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 30 C -0.23 -5.22 9.80 -38.88 -0.38 -5.60 16 31 C -0.07 -1.41 9.67 -39.66 -0.38 -1.79 16 32 H 0.07 0.91 6.40 -51.93 -0.33 0.57 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 36 H 0.08 0.49 8.09 -51.93 -0.42 0.07 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.18 1.90 6.01 -52.48 -0.32 1.58 16 40 H 0.40 5.20 6.28 -40.82 -0.26 4.95 16 41 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 42 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 43 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 44 H 0.12 2.93 6.16 -52.48 -0.32 2.61 16 45 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 46 H 0.09 2.01 8.06 -52.48 -0.42 1.59 16 47 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 379.66 15.07 5.72 5.72 Total: -1.00 -28.80 379.66 -11.02 -39.81 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -7.88 Total: 12.39 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -4.87 Total: -22.78 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.96 Total: -38.13 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.63 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.62 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.80 -11.02 -39.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880399707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.093 kcal (2) G-P(sol) polarization free energy of solvation -28.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds