Wall clock time and date at job start Tue Mar 31 2020 23:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.38727 * 2 1 4 4 C 1.53026 * 109.43052 * 119.87402 * 2 1 3 5 5 C 1.53372 * 109.75057 * 191.80897 * 4 2 1 6 6 C 1.50946 * 108.20197 * 309.35260 * 5 4 2 7 7 N 1.30129 * 128.28855 * 196.98003 * 6 5 4 8 8 N 1.40314 * 108.12809 * 179.97438 * 7 6 5 9 9 H 0.97001 * 126.00145 * 179.91576 * 8 7 6 10 10 C 1.35196 * 107.99004 * 359.64183 * 8 7 6 11 11 C 1.34573 * 107.62051 * 0.26238 * 10 8 7 12 12 C 1.50880 * 128.32677 * 179.73100 * 11 10 8 13 13 H 1.08999 * 109.71761 * 316.40059 * 12 11 10 14 14 C 1.50699 * 109.71844 * 77.05411 * 12 11 10 15 15 O 1.21272 * 120.00002 * 32.26910 * 14 12 11 16 16 N 1.34778 * 119.99841 * 212.27204 * 14 12 11 17 17 C 1.46502 * 120.00006 * 180.02562 * 16 14 12 18 18 C 1.50700 * 109.47306 * 179.97438 * 17 16 14 19 19 C 1.38628 * 119.74889 * 269.72441 * 18 17 16 20 20 C 1.37613 * 120.24957 * 179.75994 * 19 18 17 21 21 C 1.40723 * 119.74276 * 0.53584 * 20 19 18 22 22 C 1.41393 * 120.24451 * 179.74495 * 21 20 19 23 23 H 1.07999 * 120.00317 * 24.98217 * 22 21 20 24 24 C 1.39945 * 120.00175 * 204.98839 * 22 21 20 25 25 N 1.30824 * 119.99718 * 18.97177 * 24 22 21 26 26 Si 1.86797 * 120.00139 * 198.97901 * 24 22 21 27 27 H 1.48507 * 109.47239 * 89.99734 * 26 24 22 28 28 H 1.48494 * 109.47138 * 209.99512 * 26 24 22 29 29 H 1.48499 * 109.47496 * 329.99595 * 26 24 22 30 30 C 1.40715 * 119.50969 * 359.71634 * 21 20 19 31 31 C 1.37611 * 119.74728 * 0.02562 * 30 21 20 32 32 H 1.08998 * 109.47080 * 305.49109 * 1 2 3 33 33 H 1.09001 * 109.46691 * 65.49117 * 1 2 3 34 34 H 1.08997 * 109.46926 * 185.48762 * 1 2 3 35 35 H 1.08998 * 109.42294 * 71.72515 * 4 2 1 36 36 H 1.09001 * 109.42645 * 311.89180 * 4 2 1 37 37 H 1.09001 * 109.71494 * 189.67801 * 5 4 2 38 38 H 1.08996 * 109.71701 * 69.02703 * 5 4 2 39 39 H 1.07998 * 126.19184 * 180.27859 * 10 8 7 40 40 H 0.96998 * 119.99796 * 359.97438 * 16 14 12 41 41 H 1.08999 * 109.46868 * 300.00124 * 17 16 14 42 42 H 1.09000 * 109.47130 * 59.99383 * 17 16 14 43 43 H 1.08007 * 119.87568 * 0.02562 * 19 18 17 44 44 H 1.08000 * 120.13361 * 180.28163 * 20 19 18 45 45 H 0.97003 * 119.99962 * 180.02562 * 25 24 22 46 46 H 1.08005 * 120.12238 * 180.02562 * 30 21 20 47 47 H 1.07997 * 119.88157 * 180.02562 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0391 -0.7188 1.2513 5 6 3.5440 -0.4720 1.4147 6 6 4.2195 -0.7933 0.1037 7 7 5.4824 -1.0136 -0.1199 8 7 5.6448 -1.2715 -1.4895 9 1 6.4825 -1.4678 -1.9374 10 6 4.4276 -1.2044 -2.0742 11 6 3.5307 -0.9099 -1.1152 12 6 2.0403 -0.7203 -1.2544 13 1 1.8271 -0.1172 -2.1369 14 6 1.3666 -2.0625 -1.3798 15 8 1.8298 -3.0289 -0.8122 16 7 0.2492 -2.1887 -2.1227 17 6 -0.4062 -3.4934 -2.2442 18 6 -1.6245 -3.3638 -3.1217 19 6 -2.8527 -3.0634 -2.5534 20 6 -3.9710 -2.9379 -3.3455 21 6 -3.8663 -3.1268 -4.7360 22 6 -5.0095 -3.0057 -5.5593 23 1 -5.8443 -2.4002 -5.2385 24 6 -5.0593 -3.6704 -6.7897 25 7 -4.2541 -4.6746 -7.0238 26 14 -6.2755 -3.1240 -8.0980 27 1 -5.6441 -2.0939 -8.9616 28 1 -6.6686 -4.2915 -8.9270 29 1 -7.4806 -2.5519 -7.4456 30 6 -2.6155 -3.4366 -5.3012 31 6 -1.5096 -3.5520 -4.4904 32 1 -0.3633 0.5966 0.8367 33 1 -0.3633 0.4263 -0.9351 34 1 -0.3633 -1.0229 0.0983 35 1 1.8557 -1.7889 1.1545 36 1 1.5124 -0.3393 2.1270 37 1 3.9392 -1.1166 2.1998 38 1 3.7194 0.5724 1.6725 39 1 4.2138 -1.3594 -3.1214 40 1 -0.1215 -1.4157 -2.5763 41 1 0.2870 -4.2082 -2.6875 42 1 -0.7059 -3.8428 -1.2562 43 1 -2.9315 -2.9232 -1.4853 44 1 -4.9261 -2.6993 -2.9013 45 1 -4.2883 -5.1351 -7.8768 46 1 -2.5237 -3.5832 -6.3673 47 1 -0.5484 -3.7893 -4.9219 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880399708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:14 Heat of formation + Delta-G solvation = 16.398325 kcal Electronic energy + Delta-G solvation = -28698.187903 eV Core-core repulsion = 24845.131216 eV Total energy + Delta-G solvation = -3853.056687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.58959 -40.71847 -39.43876 -37.62161 -36.22676 -35.01945 -33.62842 -32.11658 -31.88711 -31.15283 -30.54659 -28.73962 -27.39504 -25.48045 -24.67318 -22.89282 -22.73463 -21.76423 -21.69492 -21.25141 -19.79549 -19.21410 -18.76455 -17.56425 -17.24636 -16.77008 -16.62089 -15.98946 -15.76070 -15.67223 -15.42442 -15.39549 -14.85705 -14.69910 -14.31554 -14.23645 -14.04501 -13.81190 -13.79525 -13.49933 -13.43508 -13.26759 -12.96049 -12.84344 -12.75025 -12.38209 -12.33087 -12.14417 -12.05272 -11.83035 -11.61434 -11.45229 -11.26837 -11.14075 -11.03241 -10.68021 -10.30878 -9.88960 -9.45522 -9.35410 -9.22627 -8.66405 -6.34527 0.86614 0.97159 1.16130 1.39693 1.49072 1.52413 1.68893 1.83517 2.01599 2.20826 2.51979 2.84745 3.45214 3.74557 3.80967 3.89693 3.93316 4.11925 4.23702 4.27493 4.34633 4.40808 4.55021 4.56257 4.58361 4.66564 4.69529 4.70543 4.87444 4.90327 4.97989 5.02290 5.06924 5.09935 5.16884 5.20934 5.27392 5.37310 5.44293 5.45039 5.53581 5.63070 5.69998 5.71025 5.94192 6.10617 6.23019 6.38702 6.46337 6.70026 6.73123 6.79428 6.93884 7.03088 7.44279 8.30939 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022200 B = 0.002248 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.985643 B =12451.152540 C =13003.769498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.070 4.070 3 H 0.104 0.896 4 C -0.116 4.116 5 C -0.036 4.036 6 C 0.083 3.917 7 N -0.327 5.327 8 N -0.479 5.479 9 H 0.451 0.549 10 C 0.074 3.926 11 C -0.238 4.238 12 C -0.019 4.019 13 H 0.117 0.883 14 C 0.521 3.479 15 O -0.582 6.582 16 N -0.711 5.711 17 C 0.195 3.805 18 C -0.223 4.223 19 C -0.066 4.066 20 C -0.242 4.242 21 C 0.087 3.913 22 C -0.498 4.498 23 H 0.077 0.923 24 C 0.037 3.963 25 N -0.822 5.822 26 Si 0.980 3.020 27 H -0.261 1.261 28 H -0.270 1.270 29 H -0.258 1.258 30 C -0.191 4.191 31 C -0.082 4.082 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.038 0.962 35 H 0.047 0.953 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.202 0.798 40 H 0.408 0.592 41 H 0.049 0.951 42 H 0.055 0.945 43 H 0.115 0.885 44 H 0.097 0.903 45 H 0.289 0.711 46 H 0.097 0.903 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.004 11.406 8.417 19.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.089 4.089 3 H 0.122 0.878 4 C -0.154 4.154 5 C -0.075 4.075 6 C -0.085 4.085 7 N -0.149 5.149 8 N -0.188 5.188 9 H 0.297 0.703 10 C -0.073 4.073 11 C -0.250 4.250 12 C -0.041 4.041 13 H 0.135 0.865 14 C 0.308 3.692 15 O -0.462 6.462 16 N -0.362 5.362 17 C 0.072 3.928 18 C -0.224 4.224 19 C -0.085 4.085 20 C -0.261 4.261 21 C 0.084 3.916 22 C -0.527 4.527 23 H 0.095 0.905 24 C -0.179 4.179 25 N -0.447 5.447 26 Si 0.801 3.199 27 H -0.186 1.186 28 H -0.195 1.195 29 H -0.182 1.182 30 C -0.211 4.211 31 C -0.101 4.101 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.123 0.877 39 H 0.219 0.781 40 H 0.244 0.756 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.133 0.867 44 H 0.116 0.884 45 H 0.099 0.901 46 H 0.115 0.885 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 14.553 10.426 9.155 20.108 hybrid contribution -1.063 -0.321 -1.745 2.069 sum 13.491 10.104 7.410 18.412 Atomic orbital electron populations 1.21955 0.94029 1.01632 1.03438 1.21097 0.95982 0.99955 0.91864 0.87765 1.21694 0.94281 1.00717 0.98696 1.20206 0.93954 1.03115 0.90255 1.22712 0.90533 0.97678 0.97625 1.76903 1.19055 1.24844 0.94145 1.46289 1.09233 1.57670 1.05601 0.70297 1.22535 0.85250 0.99017 1.00546 1.19675 0.95494 1.16667 0.93139 1.19792 0.89490 0.92780 1.02059 0.86530 1.21024 0.79758 0.91024 0.77344 1.90643 1.65597 1.41971 1.48032 1.46376 1.26964 1.12098 1.50766 1.19637 0.90861 0.84892 0.97372 1.19188 0.94185 1.15779 0.93291 1.20658 0.92050 0.97519 0.98243 1.21151 0.97887 1.13700 0.93404 1.17988 0.93181 0.88282 0.92117 1.19879 1.02638 1.27474 1.02713 0.90518 1.26749 0.97953 0.92515 1.00669 1.69881 1.35258 1.14911 1.24671 0.85232 0.78503 0.78872 0.77315 1.18582 1.19494 1.18175 1.21206 0.92538 1.08476 0.98845 1.20729 0.97063 0.98823 0.93460 0.90565 0.91307 0.94294 0.93440 0.88840 0.90313 0.87718 0.78140 0.75573 0.93257 0.92690 0.86676 0.88443 0.90084 0.88489 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.40 71.98 0.60 -1.97 16 2 C -0.07 -1.19 2.44 -10.66 -0.03 -1.22 16 3 H 0.10 1.37 8.10 -2.38 -0.02 1.36 16 4 C -0.12 -2.20 5.14 30.73 0.16 -2.04 16 5 C -0.04 -0.69 6.31 30.05 0.19 -0.50 16 6 C 0.08 2.01 7.10 43.44 0.31 2.32 16 7 N -0.33 -8.35 12.68 -47.13 -0.60 -8.95 16 8 N -0.48 -9.43 7.37 -57.89 -0.43 -9.86 16 9 H 0.45 5.74 8.96 -213.18 -1.91 3.83 16 10 C 0.07 1.44 11.95 83.34 1.00 2.44 16 11 C -0.24 -5.44 4.64 -20.10 -0.09 -5.53 16 12 C -0.02 -0.39 2.67 -12.10 -0.03 -0.42 16 13 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 14 C 0.52 14.42 5.15 87.66 0.45 14.87 16 15 O -0.58 -21.19 15.13 -3.01 -0.05 -21.24 16 16 N -0.71 -19.43 4.93 -466.79 -2.30 -21.73 16 17 C 0.20 6.50 5.79 85.63 0.50 7.00 16 18 C -0.22 -8.59 5.27 -19.68 -0.10 -8.69 16 19 C -0.07 -2.64 9.67 22.22 0.21 -2.42 16 20 C -0.24 -11.14 9.80 22.73 0.22 -10.92 16 21 C 0.09 4.46 5.56 -21.29 -0.12 4.35 16 22 C -0.50 -25.86 9.04 23.46 0.21 -25.65 16 23 H 0.08 3.85 7.91 -2.91 -0.02 3.82 16 24 C 0.04 1.79 5.11 85.26 0.44 2.23 16 25 N -0.82 -41.89 11.07 21.83 0.24 -41.65 16 26 Si 0.98 36.88 29.60 68.60 2.03 38.91 16 27 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 28 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 29 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 30 C -0.19 -9.52 8.70 22.73 0.20 -9.32 16 31 C -0.08 -3.51 9.67 22.22 0.21 -3.29 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.04 0.84 7.01 -2.39 -0.02 0.82 16 35 H 0.05 1.25 6.35 -2.39 -0.02 1.23 16 36 H 0.09 1.35 8.09 -2.39 -0.02 1.33 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.20 2.62 8.06 -2.91 -0.02 2.60 16 40 H 0.41 9.83 8.46 -92.71 -0.78 9.04 16 41 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 42 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 43 H 0.12 3.96 8.06 -2.91 -0.02 3.93 16 44 H 0.10 4.28 8.06 -2.91 -0.02 4.26 16 45 H 0.29 13.30 8.30 -92.71 -0.77 12.53 16 46 H 0.10 5.12 6.25 -2.91 -0.02 5.10 16 47 H 0.10 4.02 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -67.23 383.03 1.54 -65.68 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: -1.68 Total: 37.61 kcal Atomic # 6 Polarization: -43.10 SS G_CDS: 4.33 Total: -38.78 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -3.09 Total: -82.19 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.05 Total: -21.24 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 2.03 Total: 38.91 kcal Total: -67.23 1.54 -65.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880399708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.081 kcal (2) G-P(sol) polarization free energy of solvation -67.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds