Wall clock time and date at job start Tue Mar 31 2020 23:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.38689 * 2 1 4 4 C 1.53032 * 109.43160 * 240.12546 * 2 1 3 5 5 C 1.53373 * 109.74912 * 168.19531 * 4 2 1 6 6 C 1.50951 * 108.20464 * 50.64848 * 5 4 2 7 7 N 1.30121 * 128.28465 * 163.17652 * 6 5 4 8 8 N 1.40316 * 108.12193 * 180.30331 * 7 6 5 9 9 H 0.97002 * 125.99792 * 179.97438 * 8 7 6 10 10 C 1.35190 * 107.99436 * 359.94933 * 8 7 6 11 11 C 1.34576 * 107.61653 * 359.96949 * 10 8 7 12 12 C 1.50877 * 128.32419 * 180.13411 * 11 10 8 13 13 H 1.09002 * 109.72429 * 43.76081 * 12 11 10 14 14 C 1.50703 * 109.72109 * 283.10993 * 12 11 10 15 15 O 1.21282 * 119.99828 * 275.27597 * 14 12 11 16 16 N 1.34776 * 120.00281 * 95.27201 * 14 12 11 17 17 C 1.46498 * 119.99891 * 180.02562 * 16 14 12 18 18 C 1.50701 * 109.46786 * 179.97438 * 17 16 14 19 19 C 1.38636 * 119.75326 * 269.72214 * 18 17 16 20 20 C 1.37615 * 120.25036 * 179.76373 * 19 18 17 21 21 C 1.40716 * 119.74083 * 0.49422 * 20 19 18 22 22 C 1.41402 * 120.24109 * 179.78729 * 21 20 19 23 23 H 1.08000 * 119.99908 * 206.93289 * 22 21 20 24 24 C 1.39953 * 120.00042 * 26.93745 * 22 21 20 25 25 N 1.30825 * 119.99696 * 11.83823 * 24 22 21 26 26 Si 1.86798 * 119.99822 * 191.83545 * 24 22 21 27 27 H 1.48500 * 109.46757 * 90.00344 * 26 24 22 28 28 H 1.48504 * 109.46637 * 209.99815 * 26 24 22 29 29 H 1.48493 * 109.47138 * 330.00207 * 26 24 22 30 30 C 1.40712 * 119.51837 * 359.76225 * 21 20 19 31 31 C 1.37621 * 119.73844 * 0.02562 * 30 21 20 32 32 H 1.08995 * 109.47416 * 305.42237 * 1 2 3 33 33 H 1.09002 * 109.47317 * 65.42658 * 1 2 3 34 34 H 1.09008 * 109.47215 * 185.42260 * 1 2 3 35 35 H 1.09000 * 109.42494 * 48.10442 * 4 2 1 36 36 H 1.08999 * 109.42392 * 288.27730 * 4 2 1 37 37 H 1.08998 * 109.71292 * 290.97396 * 5 4 2 38 38 H 1.08993 * 109.71458 * 170.32296 * 5 4 2 39 39 H 1.08005 * 126.19090 * 179.97438 * 10 8 7 40 40 H 0.96993 * 119.99790 * 0.02562 * 16 14 12 41 41 H 1.08996 * 109.47354 * 299.99790 * 17 16 14 42 42 H 1.08997 * 109.47182 * 60.00136 * 17 16 14 43 43 H 1.07999 * 119.86956 * 0.02562 * 19 18 17 44 44 H 1.08001 * 120.12856 * 180.27869 * 20 19 18 45 45 H 0.96996 * 119.99402 * 180.02562 * 25 24 22 46 46 H 1.08003 * 120.13284 * 180.02562 * 30 21 20 47 47 H 1.08008 * 119.86933 * 179.97438 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0391 -0.7188 -1.2514 5 6 3.5440 -0.4721 -1.4147 6 6 4.2195 -0.7934 -0.1036 7 7 5.4827 -1.0111 0.1204 8 7 5.6439 -1.2766 1.4888 9 1 6.4815 -1.4743 1.9364 10 6 4.4271 -1.2079 2.0737 11 6 3.5306 -0.9101 1.1152 12 6 2.0403 -0.7205 1.2543 13 1 1.8270 -0.1176 2.1370 14 6 1.3663 -2.0626 1.3794 15 8 1.0782 -2.6916 0.3833 16 7 1.0839 -2.5639 2.5981 17 6 0.4292 -3.8689 2.7196 18 6 0.2281 -4.1962 4.1768 19 6 1.2103 -4.8881 4.8685 20 6 1.0394 -5.1881 6.2007 21 6 -0.1424 -4.7988 6.8578 22 6 -0.3310 -5.1055 8.2253 23 1 -1.3297 -5.2179 8.6207 24 6 0.7765 -5.2633 9.0662 25 7 1.9658 -4.9047 8.6558 26 14 0.5565 -5.9860 10.7746 27 1 0.7073 -7.4620 10.7108 28 1 1.5841 -5.4224 11.6866 29 1 -0.7967 -5.6483 11.2844 30 6 -1.1349 -4.1016 6.1445 31 6 -0.9406 -3.8085 4.8140 32 1 -0.3634 0.5956 0.8374 33 1 -0.3634 0.4274 -0.9346 34 1 -0.3634 -1.0231 0.0971 35 1 1.5123 -0.3394 -2.1270 36 1 1.8556 -1.7889 -1.1546 37 1 3.7194 0.5724 -1.6724 38 1 3.9392 -1.1167 -2.1996 39 1 4.2131 -1.3637 3.1208 40 1 1.3141 -2.0608 3.3947 41 1 -0.5374 -3.8387 2.2169 42 1 1.0547 -4.6335 2.2589 43 1 2.1148 -5.1891 4.3610 44 1 1.8078 -5.7233 6.7387 45 1 2.7334 -5.0144 9.2385 46 1 -2.0456 -3.7977 6.6392 47 1 -1.7012 -3.2738 4.2643 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880399709.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:19 Heat of formation + Delta-G solvation = 35.777693 kcal Electronic energy + Delta-G solvation = -28814.010690 eV Core-core repulsion = 24961.794356 eV Total energy + Delta-G solvation = -3852.216334 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.72975 -39.62942 -37.82935 -36.52338 -34.63397 -33.44451 -32.69461 -31.29868 -30.23828 -29.67531 -29.38878 -27.34771 -26.22852 -24.14777 -23.55916 -21.65113 -21.10502 -20.85021 -20.19904 -20.07774 -18.93995 -17.92404 -17.41819 -16.48761 -15.72849 -15.34627 -15.16052 -15.14491 -14.79415 -14.32223 -14.09930 -13.98364 -13.65665 -13.59267 -13.23183 -13.08046 -12.74612 -12.65344 -12.52015 -12.09375 -12.05656 -11.78462 -11.70670 -11.44924 -11.23345 -11.18870 -11.07142 -11.01615 -10.72279 -10.70161 -10.46648 -10.27298 -9.76899 -9.55223 -9.49168 -9.38383 -9.27619 -8.61548 -8.46291 -7.60628 -7.44066 -6.84938 -4.51082 1.79594 2.49045 2.59391 2.73451 2.94177 2.99715 3.02563 3.03379 3.06646 3.78401 3.84391 4.31050 4.53783 4.65789 4.77444 4.82975 5.03444 5.19597 5.25752 5.38504 5.43952 5.49158 5.55850 5.57933 5.74842 5.78187 5.82058 5.87641 5.89717 5.90740 6.10870 6.12994 6.20323 6.27088 6.31283 6.31921 6.53589 6.59287 6.83285 6.91991 6.95995 7.15043 7.17570 7.24599 7.48438 7.58113 7.67202 7.93097 7.95423 7.98992 8.16881 8.51659 8.59136 8.76864 8.83301 10.07786 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016904 B = 0.002534 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.987299 B =11045.542112 C =12166.997747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.066 4.066 3 H 0.074 0.926 4 C -0.129 4.129 5 C -0.038 4.038 6 C 0.096 3.904 7 N -0.294 5.294 8 N -0.483 5.483 9 H 0.440 0.560 10 C 0.075 3.925 11 C -0.228 4.228 12 C -0.024 4.024 13 H 0.092 0.908 14 C 0.521 3.479 15 O -0.543 6.543 16 N -0.717 5.717 17 C 0.184 3.816 18 C -0.239 4.239 19 C -0.085 4.085 20 C -0.164 4.164 21 C 0.115 3.885 22 C -0.458 4.458 23 H 0.078 0.922 24 C 0.073 3.927 25 N -0.796 5.796 26 Si 0.912 3.088 27 H -0.267 1.267 28 H -0.277 1.277 29 H -0.262 1.262 30 C -0.226 4.226 31 C -0.073 4.073 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.179 0.821 40 H 0.399 0.601 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.087 0.913 44 H 0.122 0.878 45 H 0.281 0.719 46 H 0.093 0.907 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.943 9.561 -11.444 15.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.085 4.085 3 H 0.093 0.907 4 C -0.167 4.167 5 C -0.078 4.078 6 C -0.073 4.073 7 N -0.116 5.116 8 N -0.191 5.191 9 H 0.284 0.716 10 C -0.072 4.072 11 C -0.240 4.240 12 C -0.046 4.046 13 H 0.110 0.890 14 C 0.307 3.693 15 O -0.422 6.422 16 N -0.367 5.367 17 C 0.062 3.938 18 C -0.241 4.241 19 C -0.104 4.104 20 C -0.183 4.183 21 C 0.112 3.888 22 C -0.487 4.487 23 H 0.096 0.904 24 C -0.144 4.144 25 N -0.422 5.422 26 Si 0.736 3.264 27 H -0.193 1.193 28 H -0.202 1.202 29 H -0.186 1.186 30 C -0.246 4.246 31 C -0.092 4.092 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.196 0.804 40 H 0.233 0.767 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.105 0.895 44 H 0.140 0.860 45 H 0.091 0.909 46 H 0.111 0.889 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.130 9.029 -12.564 16.300 hybrid contribution -0.099 -0.118 2.173 2.179 sum 5.031 8.911 -10.391 14.584 Atomic orbital electron populations 1.21974 0.94676 1.03194 1.01491 1.20928 0.95804 0.98501 0.93222 0.90747 1.21982 0.92891 1.04973 0.96857 1.20170 0.94935 1.01706 0.90949 1.22364 0.90390 0.97913 0.96642 1.76997 1.18354 1.23486 0.92808 1.46295 1.08602 1.57885 1.06311 0.71636 1.22169 0.85470 0.99978 0.99595 1.19540 0.94983 1.16543 0.92963 1.19709 0.90038 0.94403 1.00492 0.88998 1.20483 0.78137 0.87241 0.83487 1.90546 1.53969 1.61172 1.36489 1.46577 1.60765 1.21738 1.07664 1.19929 0.96136 0.83172 0.94531 1.19031 0.98157 1.12902 0.94022 1.20574 0.96468 0.98551 0.94790 1.21399 1.00213 1.04069 0.92622 1.17689 0.90938 0.87397 0.92790 1.19667 0.93842 1.41716 0.93520 0.90375 1.25930 0.94643 0.92928 1.00924 1.69785 1.00085 1.34699 1.37599 0.86248 0.79298 0.79923 0.80907 1.19254 1.20244 1.18585 1.21021 1.01449 1.07414 0.94672 1.20412 0.95539 0.98672 0.94530 0.92912 0.92485 0.91245 0.91455 0.87677 0.90218 0.90142 0.80418 0.76704 0.92446 0.92564 0.89514 0.86045 0.90854 0.88886 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 8.87 37.15 0.33 -1.33 16 2 C -0.07 -0.70 2.40 -90.40 -0.22 -0.92 16 3 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 4 C -0.13 -1.43 5.05 -26.52 -0.13 -1.57 16 5 C -0.04 -0.41 6.31 -27.57 -0.17 -0.58 16 6 C 0.10 1.24 7.10 -82.35 -0.58 0.66 16 7 N -0.29 -3.97 12.68 33.75 0.43 -3.54 16 8 N -0.48 -5.31 7.37 30.35 0.22 -5.08 16 9 H 0.44 3.41 8.96 -182.43 -1.64 1.78 16 10 C 0.07 0.83 11.95 -17.37 -0.21 0.62 16 11 C -0.23 -2.84 5.14 -104.99 -0.54 -3.38 16 12 C -0.02 -0.28 2.68 -92.63 -0.25 -0.53 16 13 H 0.09 0.93 8.12 -51.93 -0.42 0.51 16 14 C 0.52 7.63 5.72 -10.98 -0.06 7.57 16 15 O -0.54 -9.45 12.65 5.56 0.07 -9.38 16 16 N -0.72 -10.71 5.55 -61.47 -0.34 -11.05 16 17 C 0.18 3.18 5.79 -5.19 -0.03 3.15 16 18 C -0.24 -4.74 5.27 -104.33 -0.55 -5.29 16 19 C -0.08 -1.82 9.67 -39.66 -0.38 -2.21 16 20 C -0.16 -3.97 8.68 -38.87 -0.34 -4.31 16 21 C 0.11 2.87 5.57 -106.82 -0.59 2.28 16 22 C -0.46 -11.54 9.07 -37.74 -0.34 -11.88 16 23 H 0.08 1.90 7.87 -52.49 -0.41 1.49 16 24 C 0.07 1.74 5.25 -17.34 -0.09 1.65 16 25 N -0.80 -19.45 10.78 55.55 0.60 -18.85 16 26 Si 0.91 17.88 29.58 -169.99 -5.03 12.85 16 27 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 28 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 29 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 30 C -0.23 -5.17 9.80 -38.87 -0.38 -5.56 16 31 C -0.07 -1.49 9.67 -39.66 -0.38 -1.88 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 34 H 0.07 0.91 5.96 -51.92 -0.31 0.60 16 35 H 0.07 0.63 8.05 -51.93 -0.42 0.21 16 36 H 0.11 1.49 5.30 -51.93 -0.28 1.21 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.18 1.55 8.06 -52.48 -0.42 1.13 16 40 H 0.40 5.51 8.45 -40.82 -0.34 5.16 16 41 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 42 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 43 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.12 3.08 6.12 -52.49 -0.32 2.76 16 45 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 46 H 0.09 2.02 8.06 -52.48 -0.42 1.60 16 47 H 0.09 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 380.02 15.07 5.73 5.73 Total: -1.00 -28.91 380.02 -11.16 -40.08 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -7.91 Total: 12.76 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -4.93 Total: -23.50 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.91 Total: -38.53 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.07 Total: -9.38 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.91 -11.16 -40.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880399709.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.853 kcal (2) G-P(sol) polarization free energy of solvation -28.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds