Wall clock time and date at job start Tue Mar 31 2020 23:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.38689 * 2 1 4 4 C 1.53032 * 109.43160 * 240.12546 * 2 1 3 5 5 C 1.53373 * 109.74912 * 168.19531 * 4 2 1 6 6 C 1.50951 * 108.20464 * 50.64848 * 5 4 2 7 7 N 1.30121 * 128.28465 * 163.17652 * 6 5 4 8 8 N 1.40316 * 108.12193 * 180.30331 * 7 6 5 9 9 H 0.97002 * 125.99792 * 179.97438 * 8 7 6 10 10 C 1.35190 * 107.99436 * 359.94933 * 8 7 6 11 11 C 1.34576 * 107.61653 * 359.96949 * 10 8 7 12 12 C 1.50877 * 128.32419 * 180.13411 * 11 10 8 13 13 H 1.09002 * 109.72429 * 43.76081 * 12 11 10 14 14 C 1.50703 * 109.72109 * 283.10993 * 12 11 10 15 15 O 1.21282 * 119.99828 * 275.27597 * 14 12 11 16 16 N 1.34776 * 120.00281 * 95.27201 * 14 12 11 17 17 C 1.46498 * 119.99891 * 180.02562 * 16 14 12 18 18 C 1.50701 * 109.46786 * 179.97438 * 17 16 14 19 19 C 1.38636 * 119.75326 * 269.72214 * 18 17 16 20 20 C 1.37615 * 120.25036 * 179.76373 * 19 18 17 21 21 C 1.40716 * 119.74083 * 0.49422 * 20 19 18 22 22 C 1.41402 * 120.24109 * 179.78729 * 21 20 19 23 23 H 1.08000 * 119.99908 * 206.93289 * 22 21 20 24 24 C 1.39953 * 120.00042 * 26.93745 * 22 21 20 25 25 N 1.30825 * 119.99696 * 11.83823 * 24 22 21 26 26 Si 1.86798 * 119.99822 * 191.83545 * 24 22 21 27 27 H 1.48500 * 109.46757 * 90.00344 * 26 24 22 28 28 H 1.48504 * 109.46637 * 209.99815 * 26 24 22 29 29 H 1.48493 * 109.47138 * 330.00207 * 26 24 22 30 30 C 1.40712 * 119.51837 * 359.76225 * 21 20 19 31 31 C 1.37621 * 119.73844 * 0.02562 * 30 21 20 32 32 H 1.08995 * 109.47416 * 305.42237 * 1 2 3 33 33 H 1.09002 * 109.47317 * 65.42658 * 1 2 3 34 34 H 1.09008 * 109.47215 * 185.42260 * 1 2 3 35 35 H 1.09000 * 109.42494 * 48.10442 * 4 2 1 36 36 H 1.08999 * 109.42392 * 288.27730 * 4 2 1 37 37 H 1.08998 * 109.71292 * 290.97396 * 5 4 2 38 38 H 1.08993 * 109.71458 * 170.32296 * 5 4 2 39 39 H 1.08005 * 126.19090 * 179.97438 * 10 8 7 40 40 H 0.96993 * 119.99790 * 0.02562 * 16 14 12 41 41 H 1.08996 * 109.47354 * 299.99790 * 17 16 14 42 42 H 1.08997 * 109.47182 * 60.00136 * 17 16 14 43 43 H 1.07999 * 119.86956 * 0.02562 * 19 18 17 44 44 H 1.08001 * 120.12856 * 180.27869 * 20 19 18 45 45 H 0.96996 * 119.99402 * 180.02562 * 25 24 22 46 46 H 1.08003 * 120.13284 * 180.02562 * 30 21 20 47 47 H 1.08008 * 119.86933 * 179.97438 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0391 -0.7188 -1.2514 5 6 3.5440 -0.4721 -1.4147 6 6 4.2195 -0.7934 -0.1036 7 7 5.4827 -1.0111 0.1204 8 7 5.6439 -1.2766 1.4888 9 1 6.4815 -1.4743 1.9364 10 6 4.4271 -1.2079 2.0737 11 6 3.5306 -0.9101 1.1152 12 6 2.0403 -0.7205 1.2543 13 1 1.8270 -0.1176 2.1370 14 6 1.3663 -2.0626 1.3794 15 8 1.0782 -2.6916 0.3833 16 7 1.0839 -2.5639 2.5981 17 6 0.4292 -3.8689 2.7196 18 6 0.2281 -4.1962 4.1768 19 6 1.2103 -4.8881 4.8685 20 6 1.0394 -5.1881 6.2007 21 6 -0.1424 -4.7988 6.8578 22 6 -0.3310 -5.1055 8.2253 23 1 -1.3297 -5.2179 8.6207 24 6 0.7765 -5.2633 9.0662 25 7 1.9658 -4.9047 8.6558 26 14 0.5565 -5.9860 10.7746 27 1 0.7073 -7.4620 10.7108 28 1 1.5841 -5.4224 11.6866 29 1 -0.7967 -5.6483 11.2844 30 6 -1.1349 -4.1016 6.1445 31 6 -0.9406 -3.8085 4.8140 32 1 -0.3634 0.5956 0.8374 33 1 -0.3634 0.4274 -0.9346 34 1 -0.3634 -1.0231 0.0971 35 1 1.5123 -0.3394 -2.1270 36 1 1.8556 -1.7889 -1.1546 37 1 3.7194 0.5724 -1.6724 38 1 3.9392 -1.1167 -2.1996 39 1 4.2131 -1.3637 3.1208 40 1 1.3141 -2.0608 3.3947 41 1 -0.5374 -3.8387 2.2169 42 1 1.0547 -4.6335 2.2589 43 1 2.1148 -5.1891 4.3610 44 1 1.8078 -5.7233 6.7387 45 1 2.7334 -5.0144 9.2385 46 1 -2.0456 -3.7977 6.6392 47 1 -1.7012 -3.2738 4.2643 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880399709.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:18 Heat of formation + Delta-G solvation = 20.000575 kcal Electronic energy + Delta-G solvation = -28814.694838 eV Core-core repulsion = 24961.794356 eV Total energy + Delta-G solvation = -3852.900481 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.63844 -40.77296 -39.48902 -37.54860 -36.14668 -34.99783 -33.61750 -32.37945 -31.69516 -31.14400 -30.56884 -28.76485 -27.37945 -25.45758 -24.68542 -22.88991 -22.69954 -21.76053 -21.70841 -21.21774 -19.94138 -19.22065 -18.84170 -17.56306 -17.25150 -16.80304 -16.33255 -16.11348 -15.76895 -15.69241 -15.47847 -15.40787 -14.90058 -14.75492 -14.26984 -14.17345 -14.05154 -13.85584 -13.78669 -13.52782 -13.46362 -13.20545 -12.83429 -12.72083 -12.72005 -12.48796 -12.31275 -12.10613 -12.07416 -11.91608 -11.57413 -11.48432 -11.25683 -11.12967 -11.09078 -10.56530 -10.29641 -9.90711 -9.46243 -9.35845 -9.18848 -8.61045 -6.37135 0.85011 0.92240 1.15264 1.39315 1.47573 1.51362 1.57073 1.86465 2.02345 2.20705 2.49504 2.85339 3.45166 3.74056 3.81796 3.90963 3.94705 4.12759 4.23578 4.32621 4.34594 4.37629 4.53318 4.56189 4.61036 4.68298 4.69444 4.75310 4.85571 4.91482 5.00444 5.01705 5.06625 5.11013 5.16420 5.27427 5.29535 5.37598 5.45582 5.46741 5.53708 5.66539 5.70655 5.81010 5.92888 6.11038 6.22209 6.38253 6.41315 6.68994 6.70338 6.76036 6.94268 7.02215 7.43010 8.33707 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016904 B = 0.002534 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.987299 B =11045.542112 C =12166.997747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.065 4.065 3 H 0.095 0.905 4 C -0.125 4.125 5 C -0.037 4.037 6 C 0.083 3.917 7 N -0.324 5.324 8 N -0.478 5.478 9 H 0.451 0.549 10 C 0.079 3.921 11 C -0.248 4.248 12 C -0.017 4.017 13 H 0.113 0.887 14 C 0.522 3.478 15 O -0.571 6.571 16 N -0.714 5.714 17 C 0.195 3.805 18 C -0.219 4.219 19 C -0.085 4.085 20 C -0.185 4.185 21 C 0.084 3.916 22 C -0.496 4.496 23 H 0.074 0.926 24 C 0.034 3.966 25 N -0.825 5.825 26 Si 0.981 3.019 27 H -0.264 1.264 28 H -0.268 1.268 29 H -0.260 1.260 30 C -0.239 4.239 31 C -0.070 4.070 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.202 0.798 40 H 0.406 0.594 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.287 0.713 46 H 0.098 0.902 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.951 11.042 -11.838 16.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.084 4.084 3 H 0.113 0.887 4 C -0.163 4.163 5 C -0.076 4.076 6 C -0.085 4.085 7 N -0.147 5.147 8 N -0.187 5.187 9 H 0.298 0.702 10 C -0.069 4.069 11 C -0.261 4.261 12 C -0.039 4.039 13 H 0.131 0.869 14 C 0.310 3.690 15 O -0.451 6.451 16 N -0.365 5.365 17 C 0.072 3.928 18 C -0.221 4.221 19 C -0.104 4.104 20 C -0.205 4.205 21 C 0.081 3.919 22 C -0.526 4.526 23 H 0.092 0.908 24 C -0.180 4.180 25 N -0.451 5.451 26 Si 0.802 3.198 27 H -0.189 1.189 28 H -0.193 1.193 29 H -0.184 1.184 30 C -0.258 4.258 31 C -0.088 4.088 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.098 0.902 39 H 0.219 0.781 40 H 0.242 0.758 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.098 0.902 46 H 0.116 0.884 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.155 10.525 -12.968 17.479 hybrid contribution -0.084 -0.556 2.125 2.198 sum 5.071 9.969 -10.843 15.578 Atomic orbital electron populations 1.21934 0.94598 1.01691 1.02740 1.20987 0.95788 0.99242 0.92371 0.88710 1.21893 0.93416 1.03001 0.97951 1.20246 0.94385 1.02906 0.90105 1.22765 0.90429 0.97647 0.97687 1.76944 1.18946 1.24671 0.94128 1.46357 1.09347 1.57222 1.05744 0.70222 1.22589 0.85199 0.98583 1.00499 1.19707 0.95351 1.17797 0.93196 1.19725 0.89442 0.92705 1.02064 0.86912 1.21003 0.77411 0.88019 0.82589 1.90556 1.54942 1.62207 1.37356 1.46395 1.60784 1.20891 1.08395 1.19686 0.96506 0.84312 0.92329 1.19238 0.97095 1.10698 0.95024 1.20741 0.97457 0.98264 0.93927 1.21326 1.00043 1.05314 0.93769 1.18007 0.91954 0.88496 0.93410 1.19884 0.94286 1.44091 0.94340 0.90782 1.26696 0.94068 0.92755 1.04501 1.69836 1.00775 1.35425 1.39113 0.85215 0.79333 0.79015 0.76250 1.18934 1.19263 1.18353 1.21203 1.01325 1.07508 0.95778 1.20679 0.96273 0.98103 0.93788 0.91852 0.91140 0.93980 0.89748 0.90893 0.88162 0.90222 0.78134 0.75811 0.92123 0.93227 0.88038 0.87914 0.90247 0.88407 0.86543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.87 71.98 0.64 -2.25 16 2 C -0.07 -1.23 2.40 -10.65 -0.03 -1.26 16 3 H 0.09 1.46 8.10 -2.39 -0.02 1.44 16 4 C -0.12 -2.56 5.05 30.73 0.16 -2.40 16 5 C -0.04 -0.74 6.31 30.05 0.19 -0.55 16 6 C 0.08 2.03 7.10 43.44 0.31 2.34 16 7 N -0.32 -8.38 12.68 -47.14 -0.60 -8.98 16 8 N -0.48 -9.78 7.37 -57.88 -0.43 -10.20 16 9 H 0.45 6.38 8.96 -213.18 -1.91 4.47 16 10 C 0.08 1.59 11.95 83.34 1.00 2.58 16 11 C -0.25 -5.70 5.14 -20.10 -0.10 -5.81 16 12 C -0.02 -0.36 2.68 -12.10 -0.03 -0.39 16 13 H 0.11 1.91 8.12 -2.39 -0.02 1.89 16 14 C 0.52 14.46 5.72 87.66 0.50 14.96 16 15 O -0.57 -19.43 12.65 -3.04 -0.04 -19.46 16 16 N -0.71 -19.91 5.55 -466.79 -2.59 -22.50 16 17 C 0.19 6.38 5.79 85.63 0.50 6.88 16 18 C -0.22 -8.37 5.27 -19.67 -0.10 -8.47 16 19 C -0.09 -3.62 9.67 22.22 0.21 -3.41 16 20 C -0.18 -9.17 8.68 22.73 0.20 -8.98 16 21 C 0.08 4.29 5.57 -21.29 -0.12 4.17 16 22 C -0.50 -25.74 9.07 23.46 0.21 -25.53 16 23 H 0.07 3.73 7.87 -2.91 -0.02 3.70 16 24 C 0.03 1.66 5.25 85.26 0.45 2.11 16 25 N -0.83 -41.16 10.78 21.83 0.24 -40.92 16 26 Si 0.98 36.94 29.58 68.60 2.03 38.97 16 27 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 28 H -0.27 -9.59 7.11 99.48 0.71 -8.89 16 29 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 30 C -0.24 -10.93 9.80 22.73 0.22 -10.71 16 31 C -0.07 -2.77 9.67 22.22 0.21 -2.55 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.12 8.08 -2.39 -0.02 1.10 16 34 H 0.04 1.04 5.96 -2.38 -0.01 1.02 16 35 H 0.08 1.40 8.05 -2.39 -0.02 1.38 16 36 H 0.07 2.02 5.30 -2.39 -0.01 2.01 16 37 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.20 2.96 8.06 -2.91 -0.02 2.93 16 40 H 0.41 10.25 8.45 -92.71 -0.78 9.46 16 41 H 0.06 1.98 8.08 -2.39 -0.02 1.97 16 42 H 0.05 1.72 8.08 -2.39 -0.02 1.70 16 43 H 0.10 3.96 8.06 -2.91 -0.02 3.93 16 44 H 0.10 5.42 6.12 -2.91 -0.02 5.40 16 45 H 0.29 12.96 8.30 -92.71 -0.77 12.19 16 46 H 0.10 4.27 8.06 -2.91 -0.02 4.25 16 47 H 0.12 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -63.61 380.02 1.34 -62.27 By element: Atomic # 1 Polarization: 41.75 SS G_CDS: -1.68 Total: 40.08 kcal Atomic # 6 Polarization: -43.66 SS G_CDS: 4.41 Total: -39.25 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -3.38 Total: -82.61 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.04 Total: -19.46 kcal Atomic # 14 Polarization: 36.94 SS G_CDS: 2.03 Total: 38.97 kcal Total: -63.61 1.34 -62.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880399709.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.269 kcal (2) G-P(sol) polarization free energy of solvation -63.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds