Wall clock time and date at job start Tue Mar 31 2020 23:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.42994 * 2 1 4 4 C 1.53030 * 109.42386 * 119.89904 * 2 1 3 5 5 C 1.53377 * 109.74502 * 191.80366 * 4 2 1 6 6 C 1.50938 * 108.20337 * 309.34888 * 5 4 2 7 7 N 1.30139 * 128.28375 * 196.66979 * 6 5 4 8 8 N 1.40318 * 108.12321 * 179.85553 * 7 6 5 9 9 H 0.96996 * 126.00303 * 180.02562 * 8 7 6 10 10 C 1.35204 * 107.99149 * 0.03522 * 8 7 6 11 11 C 1.34571 * 107.61981 * 0.03880 * 10 8 7 12 12 C 1.50863 * 128.34567 * 179.78441 * 11 10 8 13 13 H 1.09001 * 109.75169 * 77.06399 * 12 11 10 14 14 C 1.50702 * 109.67014 * 316.42194 * 12 11 10 15 15 O 1.21275 * 119.99714 * 241.27765 * 14 12 11 16 16 N 1.34772 * 119.99985 * 61.27262 * 14 12 11 17 17 C 1.46508 * 119.99688 * 179.97438 * 16 14 12 18 18 C 1.50696 * 109.46870 * 180.02562 * 17 16 14 19 19 C 1.38636 * 119.74935 * 269.72603 * 18 17 16 20 20 C 1.37625 * 120.24768 * 179.76745 * 19 18 17 21 21 C 1.40718 * 119.74210 * 0.48587 * 20 19 18 22 22 C 1.41394 * 120.24401 * 179.79503 * 21 20 19 23 23 H 1.07992 * 120.00497 * 150.20757 * 22 21 20 24 24 C 1.39952 * 119.99727 * 330.20353 * 22 21 20 25 25 N 1.30819 * 120.00000 * 161.73687 * 24 22 21 26 26 Si 1.86803 * 119.99970 * 341.73719 * 24 22 21 27 27 H 1.48497 * 109.47118 * 95.40935 * 26 24 22 28 28 H 1.48502 * 109.47148 * 215.41273 * 26 24 22 29 29 H 1.48504 * 109.46994 * 335.41074 * 26 24 22 30 30 C 1.40719 * 119.51307 * 359.76791 * 21 20 19 31 31 C 1.37614 * 119.74452 * 359.97438 * 30 21 20 32 32 H 1.08997 * 109.47631 * 300.00604 * 1 2 3 33 33 H 1.09003 * 109.46552 * 60.00272 * 1 2 3 34 34 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.42209 * 311.88173 * 4 2 1 36 36 H 1.08997 * 109.43043 * 71.71571 * 4 2 1 37 37 H 1.09002 * 109.71375 * 69.02825 * 5 4 2 38 38 H 1.08994 * 109.71294 * 189.62369 * 5 4 2 39 39 H 1.07994 * 126.18786 * 180.02562 * 10 8 7 40 40 H 0.96999 * 120.00712 * 0.02562 * 16 14 12 41 41 H 1.09001 * 109.47168 * 300.00333 * 17 16 14 42 42 H 1.08997 * 109.46629 * 60.00453 * 17 16 14 43 43 H 1.07996 * 119.87511 * 0.02562 * 19 18 17 44 44 H 1.07994 * 120.12742 * 180.23288 * 20 19 18 45 45 H 0.97004 * 120.00194 * 180.02562 * 25 24 22 46 46 H 1.08006 * 120.12453 * 179.97438 * 30 21 20 47 47 H 1.08001 * 119.87236 * 179.97438 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0278 0.0000 4 6 2.0389 -0.7194 1.2511 5 6 3.5439 -0.4727 1.4146 6 6 4.2194 -0.7937 0.1035 7 7 5.4831 -1.0086 -0.1210 8 7 5.6448 -1.2714 -1.4898 9 1 6.4826 -1.4667 -1.9379 10 6 4.4276 -1.2041 -2.0746 11 6 3.5306 -0.9097 -1.1155 12 6 2.0403 -0.7211 -1.2539 13 1 1.5529 -1.6919 -1.3438 14 6 1.7456 0.1118 -2.4748 15 8 1.1822 1.1795 -2.3589 16 7 2.1081 -0.3299 -3.6954 17 6 1.8211 0.4796 -4.8823 18 6 2.3242 -0.2340 -6.1106 19 6 3.6166 -0.0063 -6.5575 20 6 4.0882 -0.6561 -7.6753 21 6 3.2496 -1.5466 -8.3709 22 6 3.7218 -2.2166 -9.5231 23 1 3.3356 -3.1927 -9.7765 24 6 4.6895 -1.6145 -10.3353 25 7 5.3836 -2.3405 -11.1735 26 14 4.9902 0.2257 -10.2224 27 1 6.1249 0.4862 -9.3006 28 1 5.3151 0.7578 -11.5702 29 1 3.7695 0.8960 -9.7066 30 6 1.9379 -1.7659 -7.9112 31 6 1.4893 -1.1093 -6.7881 32 1 -0.3634 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8901 34 1 -0.3633 -1.0277 -0.0005 35 1 1.5122 -0.3401 2.1268 36 1 1.8554 -1.7894 1.1540 37 1 3.7194 0.5716 1.6728 38 1 3.9388 -1.1170 2.2000 39 1 4.2139 -1.3584 -3.1218 40 1 2.5584 -1.1840 -3.7882 41 1 0.7452 0.6324 -4.9664 42 1 2.3194 1.4449 -4.7928 43 1 4.2571 0.6804 -6.0241 44 1 5.0966 -0.4801 -8.0196 45 1 6.0547 -1.9233 -11.7362 46 1 1.2857 -2.4470 -8.4378 47 1 0.4828 -1.2757 -6.4336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880399710.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:22 Heat of formation + Delta-G solvation = 34.947326 kcal Electronic energy + Delta-G solvation = -28925.897815 eV Core-core repulsion = 25073.645474 eV Total energy + Delta-G solvation = -3852.252342 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.80802 -39.61473 -38.11127 -36.91027 -34.80392 -33.58276 -32.77665 -31.56229 -30.55980 -29.86936 -29.75884 -27.46102 -26.38276 -24.26676 -23.55399 -21.76925 -21.52148 -20.95065 -20.38702 -20.09733 -19.01429 -17.88646 -17.58046 -17.05119 -15.89787 -15.60002 -15.28159 -15.04184 -14.86439 -14.38553 -14.34191 -14.15495 -13.94320 -13.77438 -13.40021 -13.23077 -12.95984 -12.85479 -12.48458 -12.47912 -12.16828 -11.99282 -11.83788 -11.71409 -11.59981 -11.24080 -11.02667 -10.92872 -10.75612 -10.72692 -10.62351 -10.38257 -10.01443 -9.74947 -9.64276 -9.54590 -9.26777 -8.77246 -8.58126 -7.89302 -7.72610 -7.11082 -4.65422 1.73979 2.28734 2.47298 2.54724 2.67044 2.91393 2.99055 3.11175 3.21001 3.57218 3.85570 4.21509 4.35956 4.52588 4.60213 4.73706 4.86293 5.08180 5.16004 5.25041 5.27606 5.31267 5.40365 5.50601 5.58725 5.62301 5.68650 5.69597 5.76180 5.82938 5.88383 5.93380 6.01756 6.04928 6.14038 6.29830 6.31663 6.42740 6.44562 6.69075 6.70424 6.75109 7.01422 7.12028 7.26254 7.37740 7.50846 7.63621 7.71861 7.77514 7.96691 8.19514 8.42451 8.49222 8.63648 9.90557 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016888 B = 0.002763 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.577666 B =10129.939723 C =11071.381665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.069 4.069 3 H 0.082 0.918 4 C -0.111 4.111 5 C -0.040 4.040 6 C 0.090 3.910 7 N -0.290 5.290 8 N -0.479 5.479 9 H 0.442 0.558 10 C 0.074 3.926 11 C -0.235 4.235 12 C -0.023 4.023 13 H 0.100 0.900 14 C 0.518 3.482 15 O -0.543 6.543 16 N -0.722 5.722 17 C 0.183 3.817 18 C -0.248 4.248 19 C -0.057 4.057 20 C -0.242 4.242 21 C 0.098 3.902 22 C -0.443 4.443 23 H 0.092 0.908 24 C 0.083 3.917 25 N -0.802 5.802 26 Si 0.913 3.087 27 H -0.270 1.270 28 H -0.290 1.290 29 H -0.243 1.243 30 C -0.212 4.212 31 C -0.061 4.061 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.178 0.822 40 H 0.396 0.604 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.092 0.908 44 H 0.100 0.900 45 H 0.287 0.713 46 H 0.101 0.899 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.310 1.660 19.417 19.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.088 4.088 3 H 0.100 0.900 4 C -0.149 4.149 5 C -0.079 4.079 6 C -0.079 4.079 7 N -0.112 5.112 8 N -0.187 5.187 9 H 0.286 0.714 10 C -0.073 4.073 11 C -0.247 4.247 12 C -0.045 4.045 13 H 0.118 0.882 14 C 0.304 3.696 15 O -0.421 6.421 16 N -0.374 5.374 17 C 0.061 3.939 18 C -0.249 4.249 19 C -0.076 4.076 20 C -0.262 4.262 21 C 0.095 3.905 22 C -0.470 4.470 23 H 0.110 0.890 24 C -0.137 4.137 25 N -0.425 5.425 26 Si 0.739 3.261 27 H -0.196 1.196 28 H -0.217 1.217 29 H -0.166 1.166 30 C -0.231 4.231 31 C -0.080 4.080 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.194 0.806 40 H 0.231 0.769 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.111 0.889 44 H 0.118 0.882 45 H 0.098 0.902 46 H 0.119 0.881 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.379 2.282 19.749 20.022 hybrid contribution 0.362 0.123 -1.161 1.222 sum -2.017 2.405 18.588 18.851 Atomic orbital electron populations 1.21892 0.94437 1.01483 1.02885 1.20940 0.96066 0.99964 0.91796 0.89980 1.21667 0.93953 1.01240 0.98030 1.20156 0.94249 1.02407 0.91079 1.22303 0.90490 0.98595 0.96502 1.77002 1.18091 1.23220 0.92926 1.46322 1.08659 1.57566 1.06141 0.71402 1.22258 0.85560 1.00126 0.99384 1.19636 0.95474 1.16499 0.93052 1.19800 0.91280 0.99560 0.93871 0.88186 1.20512 0.78192 0.86517 0.84423 1.90648 1.42265 1.22743 1.86401 1.46632 1.60501 1.23915 1.06316 1.19937 0.99482 0.92815 0.81659 1.19016 0.96380 1.08501 1.01023 1.20481 0.94244 0.97089 0.95760 1.21027 0.99409 1.06412 0.99311 1.17771 0.90676 0.89804 0.92262 1.19579 1.17016 1.04602 1.05844 0.89032 1.26214 0.92392 1.01378 0.93669 1.69690 1.15984 1.38626 1.18201 0.86278 0.80883 0.82075 0.76815 1.19649 1.21722 1.16600 1.21018 0.95836 1.06163 1.00074 1.20533 0.97260 0.95405 0.94770 0.92678 0.91047 0.93131 0.90591 0.91371 0.89738 0.89909 0.80555 0.76858 0.92100 0.92285 0.88943 0.88217 0.90231 0.88081 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.95 37.16 0.33 -1.11 16 2 C -0.07 -0.70 1.77 -90.41 -0.16 -0.86 16 3 H 0.08 0.99 7.75 -51.93 -0.40 0.58 16 4 C -0.11 -0.87 5.17 -26.52 -0.14 -1.00 16 5 C -0.04 -0.35 6.31 -27.57 -0.17 -0.52 16 6 C 0.09 1.05 7.10 -82.34 -0.58 0.47 16 7 N -0.29 -3.69 12.68 33.75 0.43 -3.26 16 8 N -0.48 -5.23 7.37 30.35 0.22 -5.00 16 9 H 0.44 3.61 8.96 -182.44 -1.64 1.97 16 10 C 0.07 0.82 11.01 -17.36 -0.19 0.63 16 11 C -0.23 -2.73 5.41 -104.99 -0.57 -3.30 16 12 C -0.02 -0.25 2.32 -92.65 -0.22 -0.47 16 13 H 0.10 0.97 8.13 -51.93 -0.42 0.55 16 14 C 0.52 7.20 6.80 -10.99 -0.07 7.12 16 15 O -0.54 -9.22 14.30 5.56 0.08 -9.14 16 16 N -0.72 -9.80 4.94 -61.47 -0.30 -10.11 16 17 C 0.18 2.89 5.79 -5.19 -0.03 2.86 16 18 C -0.25 -4.46 5.27 -104.33 -0.55 -5.01 16 19 C -0.06 -1.10 9.67 -39.66 -0.38 -1.49 16 20 C -0.24 -5.36 7.18 -38.87 -0.28 -5.64 16 21 C 0.10 2.31 5.10 -106.82 -0.55 1.76 16 22 C -0.44 -11.29 9.57 -37.74 -0.36 -11.65 16 23 H 0.09 2.45 8.06 -52.49 -0.42 2.03 16 24 C 0.08 2.08 5.40 -17.34 -0.09 1.99 16 25 N -0.80 -20.43 13.93 55.55 0.77 -19.66 16 26 Si 0.91 19.92 24.52 -169.99 -4.17 15.75 16 27 H -0.27 -5.72 6.71 56.52 0.38 -5.34 16 28 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 29 H -0.24 -5.45 6.86 56.52 0.39 -5.07 16 30 C -0.21 -4.51 9.80 -38.87 -0.38 -4.89 16 31 C -0.06 -1.14 9.67 -39.66 -0.38 -1.53 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.86 6.40 -51.93 -0.33 0.53 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 36 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.18 1.77 6.00 -52.49 -0.32 1.45 16 40 H 0.40 4.82 6.28 -40.82 -0.26 4.56 16 41 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 42 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 43 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 44 H 0.10 2.23 4.73 -52.49 -0.25 1.98 16 45 H 0.29 6.62 8.30 -40.82 -0.34 6.28 16 46 H 0.10 2.06 8.06 -52.48 -0.42 1.64 16 47 H 0.09 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 374.42 15.07 5.64 5.64 Total: -1.00 -28.93 374.42 -9.95 -38.88 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -7.84 Total: 9.52 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -4.78 Total: -22.63 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 1.12 Total: -38.02 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.08 Total: -9.14 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.17 Total: 15.75 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.93 -9.95 -38.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880399710.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.824 kcal (2) G-P(sol) polarization free energy of solvation -28.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds