Wall clock time and date at job start Tue Mar 31 2020 23:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.42994 * 2 1 4 4 C 1.53030 * 109.42386 * 119.89904 * 2 1 3 5 5 C 1.53377 * 109.74502 * 191.80366 * 4 2 1 6 6 C 1.50938 * 108.20337 * 309.34888 * 5 4 2 7 7 N 1.30139 * 128.28375 * 196.66979 * 6 5 4 8 8 N 1.40318 * 108.12321 * 179.85553 * 7 6 5 9 9 H 0.96996 * 126.00303 * 180.02562 * 8 7 6 10 10 C 1.35204 * 107.99149 * 0.03522 * 8 7 6 11 11 C 1.34571 * 107.61981 * 0.03880 * 10 8 7 12 12 C 1.50863 * 128.34567 * 179.78441 * 11 10 8 13 13 H 1.09001 * 109.75169 * 77.06399 * 12 11 10 14 14 C 1.50702 * 109.67014 * 316.42194 * 12 11 10 15 15 O 1.21275 * 119.99714 * 241.27765 * 14 12 11 16 16 N 1.34772 * 119.99985 * 61.27262 * 14 12 11 17 17 C 1.46508 * 119.99688 * 179.97438 * 16 14 12 18 18 C 1.50696 * 109.46870 * 180.02562 * 17 16 14 19 19 C 1.38636 * 119.74935 * 269.72603 * 18 17 16 20 20 C 1.37625 * 120.24768 * 179.76745 * 19 18 17 21 21 C 1.40718 * 119.74210 * 0.48587 * 20 19 18 22 22 C 1.41394 * 120.24401 * 179.79503 * 21 20 19 23 23 H 1.07992 * 120.00497 * 150.20757 * 22 21 20 24 24 C 1.39952 * 119.99727 * 330.20353 * 22 21 20 25 25 N 1.30819 * 120.00000 * 161.73687 * 24 22 21 26 26 Si 1.86803 * 119.99970 * 341.73719 * 24 22 21 27 27 H 1.48497 * 109.47118 * 95.40935 * 26 24 22 28 28 H 1.48502 * 109.47148 * 215.41273 * 26 24 22 29 29 H 1.48504 * 109.46994 * 335.41074 * 26 24 22 30 30 C 1.40719 * 119.51307 * 359.76791 * 21 20 19 31 31 C 1.37614 * 119.74452 * 359.97438 * 30 21 20 32 32 H 1.08997 * 109.47631 * 300.00604 * 1 2 3 33 33 H 1.09003 * 109.46552 * 60.00272 * 1 2 3 34 34 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.42209 * 311.88173 * 4 2 1 36 36 H 1.08997 * 109.43043 * 71.71571 * 4 2 1 37 37 H 1.09002 * 109.71375 * 69.02825 * 5 4 2 38 38 H 1.08994 * 109.71294 * 189.62369 * 5 4 2 39 39 H 1.07994 * 126.18786 * 180.02562 * 10 8 7 40 40 H 0.96999 * 120.00712 * 0.02562 * 16 14 12 41 41 H 1.09001 * 109.47168 * 300.00333 * 17 16 14 42 42 H 1.08997 * 109.46629 * 60.00453 * 17 16 14 43 43 H 1.07996 * 119.87511 * 0.02562 * 19 18 17 44 44 H 1.07994 * 120.12742 * 180.23288 * 20 19 18 45 45 H 0.97004 * 120.00194 * 180.02562 * 25 24 22 46 46 H 1.08006 * 120.12453 * 179.97438 * 30 21 20 47 47 H 1.08001 * 119.87236 * 179.97438 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0278 0.0000 4 6 2.0389 -0.7194 1.2511 5 6 3.5439 -0.4727 1.4146 6 6 4.2194 -0.7937 0.1035 7 7 5.4831 -1.0086 -0.1210 8 7 5.6448 -1.2714 -1.4898 9 1 6.4826 -1.4667 -1.9379 10 6 4.4276 -1.2041 -2.0746 11 6 3.5306 -0.9097 -1.1155 12 6 2.0403 -0.7211 -1.2539 13 1 1.5529 -1.6919 -1.3438 14 6 1.7456 0.1118 -2.4748 15 8 1.1822 1.1795 -2.3589 16 7 2.1081 -0.3299 -3.6954 17 6 1.8211 0.4796 -4.8823 18 6 2.3242 -0.2340 -6.1106 19 6 3.6166 -0.0063 -6.5575 20 6 4.0882 -0.6561 -7.6753 21 6 3.2496 -1.5466 -8.3709 22 6 3.7218 -2.2166 -9.5231 23 1 3.3356 -3.1927 -9.7765 24 6 4.6895 -1.6145 -10.3353 25 7 5.3836 -2.3405 -11.1735 26 14 4.9902 0.2257 -10.2224 27 1 6.1249 0.4862 -9.3006 28 1 5.3151 0.7578 -11.5702 29 1 3.7695 0.8960 -9.7066 30 6 1.9379 -1.7659 -7.9112 31 6 1.4893 -1.1093 -6.7881 32 1 -0.3634 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8901 34 1 -0.3633 -1.0277 -0.0005 35 1 1.5122 -0.3401 2.1268 36 1 1.8554 -1.7894 1.1540 37 1 3.7194 0.5716 1.6728 38 1 3.9388 -1.1170 2.2000 39 1 4.2139 -1.3584 -3.1218 40 1 2.5584 -1.1840 -3.7882 41 1 0.7452 0.6324 -4.9664 42 1 2.3194 1.4449 -4.7928 43 1 4.2571 0.6804 -6.0241 44 1 5.0966 -0.4801 -8.0196 45 1 6.0547 -1.9233 -11.7362 46 1 1.2857 -2.4470 -8.4378 47 1 0.4828 -1.2757 -6.4336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880399710.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:21 Heat of formation + Delta-G solvation = 18.014607 kcal Electronic energy + Delta-G solvation = -28926.632073 eV Core-core repulsion = 25073.645474 eV Total energy + Delta-G solvation = -3852.986599 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.66805 -40.73999 -39.68941 -37.78477 -36.23915 -35.18385 -33.66213 -32.75047 -31.79874 -31.52353 -30.55060 -28.81744 -27.44270 -25.33694 -24.74040 -23.35266 -22.60859 -21.85263 -21.74160 -21.29018 -19.79710 -19.38177 -18.76555 -18.16458 -17.42935 -16.85881 -16.40222 -16.08793 -15.85317 -15.70156 -15.58620 -15.53080 -15.07302 -14.86790 -14.73215 -14.28831 -14.14738 -14.07761 -13.72509 -13.66937 -13.51601 -13.22822 -13.04014 -12.86504 -12.66031 -12.45478 -12.36802 -12.07033 -12.03951 -11.82605 -11.68810 -11.50840 -11.48036 -11.41333 -11.04618 -10.70901 -10.39001 -9.97299 -9.54636 -9.49574 -9.38823 -8.93923 -6.53567 0.64946 0.86699 0.88478 1.24154 1.38000 1.46839 1.55290 1.79958 1.95813 2.08380 2.33458 2.70225 3.42264 3.50720 3.74796 3.78640 3.92043 4.03936 4.14208 4.20561 4.31952 4.37974 4.39150 4.51300 4.56163 4.59822 4.65626 4.73837 4.75888 4.85095 4.89642 5.00255 5.01582 5.04434 5.08534 5.15172 5.19702 5.29113 5.32105 5.46075 5.56040 5.58366 5.60903 5.65437 5.71093 5.89654 6.01781 6.23646 6.36071 6.38774 6.64017 6.67028 6.71832 6.80741 7.32381 8.14217 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016888 B = 0.002763 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.577666 B =10129.939723 C =11071.381665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.067 4.067 3 H 0.059 0.941 4 C -0.102 4.102 5 C -0.041 4.041 6 C 0.083 3.917 7 N -0.318 5.318 8 N -0.477 5.477 9 H 0.451 0.549 10 C 0.071 3.929 11 C -0.247 4.247 12 C -0.016 4.016 13 H 0.119 0.881 14 C 0.519 3.481 15 O -0.573 6.573 16 N -0.716 5.716 17 C 0.189 3.811 18 C -0.215 4.215 19 C -0.059 4.059 20 C -0.251 4.251 21 C 0.080 3.920 22 C -0.483 4.483 23 H 0.057 0.943 24 C 0.049 3.951 25 N -0.847 5.847 26 Si 0.964 3.036 27 H -0.258 1.258 28 H -0.281 1.281 29 H -0.252 1.252 30 C -0.221 4.221 31 C -0.056 4.056 32 H 0.067 0.933 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.187 0.813 40 H 0.405 0.595 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.119 0.881 44 H 0.095 0.905 45 H 0.294 0.706 46 H 0.102 0.898 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.274 2.767 22.514 23.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 H 0.078 0.922 4 C -0.140 4.140 5 C -0.080 4.080 6 C -0.086 4.086 7 N -0.140 5.140 8 N -0.186 5.186 9 H 0.297 0.703 10 C -0.076 4.076 11 C -0.259 4.259 12 C -0.038 4.038 13 H 0.137 0.863 14 C 0.307 3.693 15 O -0.453 6.453 16 N -0.368 5.368 17 C 0.067 3.933 18 C -0.217 4.217 19 C -0.077 4.077 20 C -0.270 4.270 21 C 0.077 3.923 22 C -0.512 4.512 23 H 0.076 0.924 24 C -0.166 4.166 25 N -0.473 5.473 26 Si 0.788 3.212 27 H -0.183 1.183 28 H -0.208 1.208 29 H -0.176 1.176 30 C -0.240 4.240 31 C -0.075 4.075 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.204 0.796 40 H 0.242 0.758 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.137 0.863 44 H 0.113 0.887 45 H 0.104 0.896 46 H 0.120 0.880 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.325 3.366 22.856 23.340 hybrid contribution 0.501 -0.173 -1.881 1.954 sum -2.824 3.193 20.975 21.404 Atomic orbital electron populations 1.21845 0.94016 1.02232 1.02204 1.20930 0.96352 0.98900 0.92454 0.92217 1.21633 0.93286 1.01515 0.97556 1.20305 0.94656 1.02914 0.90153 1.22799 0.90246 0.97823 0.97690 1.76969 1.18900 1.24359 0.93813 1.46379 1.09177 1.57245 1.05811 0.70323 1.22462 0.85644 0.99720 0.99802 1.19769 0.95723 1.17071 0.93310 1.19816 0.91271 0.99890 0.92808 0.86329 1.20976 0.77202 0.86236 0.84927 1.90646 1.43599 1.24225 1.86812 1.46420 1.60577 1.24053 1.05738 1.19780 0.99639 0.92654 0.81261 1.19315 0.95419 1.06196 1.00748 1.20758 0.95141 0.96962 0.94860 1.21107 0.99213 1.06533 1.00135 1.17904 0.91853 0.90544 0.91992 1.19541 1.19228 1.04335 1.08094 0.92429 1.26811 0.92067 1.04495 0.93238 1.69722 1.17564 1.40009 1.20025 0.85509 0.80508 0.77891 0.77333 1.18344 1.20775 1.17590 1.21195 0.95244 1.06555 1.01033 1.20829 0.98713 0.94367 0.93579 0.91365 0.93737 0.91617 0.88434 0.90496 0.89406 0.88525 0.79607 0.75779 0.91662 0.92363 0.86313 0.88712 0.89576 0.88003 0.85641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.95 71.98 0.64 -1.79 16 2 C -0.07 -1.19 1.77 -10.66 -0.02 -1.21 16 3 H 0.06 1.34 7.75 -2.39 -0.02 1.32 16 4 C -0.10 -1.25 5.17 30.73 0.16 -1.09 16 5 C -0.04 -0.61 6.31 30.05 0.19 -0.42 16 6 C 0.08 1.76 7.10 43.43 0.31 2.07 16 7 N -0.32 -7.56 12.68 -47.14 -0.60 -8.16 16 8 N -0.48 -9.62 7.37 -57.88 -0.43 -10.04 16 9 H 0.45 6.74 8.96 -213.18 -1.91 4.83 16 10 C 0.07 1.43 11.01 83.33 0.92 2.34 16 11 C -0.25 -5.15 5.41 -20.10 -0.11 -5.25 16 12 C -0.02 -0.31 2.32 -12.11 -0.03 -0.34 16 13 H 0.12 1.89 8.13 -2.39 -0.02 1.87 16 14 C 0.52 13.11 6.80 87.66 0.60 13.70 16 15 O -0.57 -18.38 14.30 -3.01 -0.04 -18.42 16 16 N -0.72 -17.13 4.94 -466.79 -2.31 -19.44 16 17 C 0.19 5.30 5.79 85.63 0.50 5.80 16 18 C -0.22 -7.03 5.27 -19.67 -0.10 -7.13 16 19 C -0.06 -2.10 9.67 22.22 0.21 -1.89 16 20 C -0.25 -10.81 7.18 22.73 0.16 -10.65 16 21 C 0.08 3.78 5.10 -21.29 -0.11 3.67 16 22 C -0.48 -25.87 9.57 23.46 0.22 -25.64 16 23 H 0.06 3.33 8.06 -2.91 -0.02 3.31 16 24 C 0.05 2.53 5.40 85.26 0.46 2.99 16 25 N -0.85 -45.21 13.93 21.83 0.30 -44.90 16 26 Si 0.96 41.40 24.52 68.60 1.68 43.08 16 27 H -0.26 -10.43 6.71 99.48 0.67 -9.76 16 28 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 29 H -0.25 -11.05 6.86 99.48 0.68 -10.36 16 30 C -0.22 -9.27 9.80 22.73 0.22 -9.05 16 31 C -0.06 -1.95 9.67 22.22 0.21 -1.74 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.04 0.99 6.40 -2.39 -0.02 0.98 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 35 H 0.10 0.81 8.09 -2.39 -0.02 0.79 16 36 H 0.08 0.85 8.10 -2.39 -0.02 0.83 16 37 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.19 3.23 6.00 -2.91 -0.02 3.21 16 40 H 0.41 8.45 6.28 -92.71 -0.58 7.86 16 41 H 0.07 1.84 8.08 -2.39 -0.02 1.82 16 42 H 0.06 1.71 8.08 -2.39 -0.02 1.69 16 43 H 0.12 3.68 8.06 -2.91 -0.02 3.65 16 44 H 0.10 4.16 4.73 -2.91 -0.01 4.15 16 45 H 0.29 14.10 8.30 -92.71 -0.77 13.33 16 46 H 0.10 4.18 8.06 -2.91 -0.02 4.16 16 47 H 0.13 3.64 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -64.35 374.42 1.52 -62.83 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: -1.54 Total: 30.66 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 4.44 Total: -35.61 kcal Atomic # 7 Polarization: -79.51 SS G_CDS: -3.03 Total: -82.54 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.04 Total: -18.42 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 1.68 Total: 43.08 kcal Total: -64.35 1.52 -62.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880399710.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.846 kcal (2) G-P(sol) polarization free energy of solvation -64.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds