Wall clock time and date at job start Tue Mar 31 2020 22:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47381 * 8.66603 * 3 2 1 5 5 H 1.09005 * 109.46943 * 304.99847 * 4 3 2 6 6 C 1.53003 * 109.47041 * 185.00496 * 4 3 2 7 7 O 1.42899 * 109.46689 * 304.99453 * 6 4 3 8 8 N 1.46892 * 109.46959 * 64.99862 * 4 3 2 9 9 C 1.46903 * 110.99878 * 204.99960 * 8 4 3 10 10 C 1.50705 * 109.47260 * 180.02562 * 9 8 4 11 11 C 1.35084 * 126.07115 * 260.00102 * 10 9 8 12 12 N 1.35038 * 107.97318 * 179.97438 * 11 10 9 13 13 C 1.46502 * 125.92944 * 180.02562 * 12 11 10 14 14 C 1.50708 * 109.46934 * 125.00175 * 13 12 11 15 15 H 1.07998 * 119.99764 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99895 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00143 * 179.97438 * 16 14 13 18 18 Si 1.86809 * 119.99928 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46813 * 90.00109 * 18 16 14 20 20 H 1.48504 * 109.46862 * 210.00044 * 18 16 14 21 21 H 1.48499 * 109.47058 * 330.00165 * 18 16 14 22 22 N 1.40070 * 108.14027 * 359.75365 * 12 11 10 23 23 C 1.31621 * 108.10860 * 0.41528 * 22 12 11 24 24 C 1.48423 * 126.03914 * 179.84981 * 23 22 12 25 25 C 1.39320 * 120.11862 * 324.69604 * 24 23 22 26 26 C 1.38019 * 119.88091 * 179.97438 * 25 24 23 27 27 C 1.38325 * 120.11832 * 359.97438 * 26 25 24 28 28 C 1.38323 * 120.23744 * 0.02562 * 27 26 25 29 29 C 1.38017 * 120.12365 * 359.97438 * 28 27 26 30 30 H 4.44648 * 5.63401 * 180.02562 * 4 1 2 31 31 H 1.09010 * 109.46891 * 248.66471 * 3 2 1 32 32 H 1.09000 * 109.47092 * 128.66974 * 3 2 1 33 33 H 1.09002 * 109.47452 * 64.99911 * 6 4 3 34 34 H 1.08996 * 109.47075 * 185.00049 * 6 4 3 35 35 H 0.96705 * 113.99387 * 180.02562 * 7 6 4 36 36 H 1.00891 * 111.00681 * 328.95202 * 8 4 3 37 37 H 1.09004 * 109.46990 * 60.00064 * 9 8 4 38 38 H 1.09001 * 109.47450 * 300.00669 * 9 8 4 39 39 H 1.07997 * 126.01548 * 359.97438 * 11 10 9 40 40 H 1.08998 * 109.47271 * 245.00212 * 13 12 11 41 41 H 1.08999 * 109.47061 * 5.00729 * 13 12 11 42 42 H 0.97003 * 120.00435 * 179.97438 * 17 16 14 43 43 H 1.08000 * 120.06310 * 359.95226 * 25 24 23 44 44 H 1.08006 * 119.94549 * 180.02562 * 26 25 24 45 45 H 1.07994 * 119.87991 * 179.72372 * 27 26 25 46 46 H 1.08001 * 119.93386 * 180.02562 * 28 27 26 47 47 H 1.07994 * 120.06263 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4251 -0.2173 5 1 2.7224 -2.0851 0.5337 6 6 4.6816 -1.4451 -0.0932 7 8 5.2456 -0.4938 -0.9981 8 7 2.7683 -1.8854 -1.5571 9 6 2.6902 -3.3515 -1.6080 10 6 2.2907 -3.7855 -2.9948 11 6 1.0509 -4.1506 -3.3877 12 7 1.1058 -4.4674 -4.6992 13 6 -0.0197 -4.9154 -5.5232 14 6 -0.1481 -4.0192 -6.7281 15 1 0.5401 -3.1984 -6.8663 16 6 -1.1441 -4.2473 -7.6538 17 7 -1.2565 -3.4650 -8.7049 18 14 -2.3339 -5.6675 -7.4149 19 1 -3.5086 -5.2031 -6.6341 20 1 -2.7850 -6.1635 -8.7400 21 1 -1.6540 -6.7647 -6.6808 22 7 2.4242 -4.2874 -5.1365 23 6 3.1435 -3.8819 -4.1115 24 6 4.5954 -3.5745 -4.1306 25 6 5.4570 -4.3184 -4.9339 26 6 6.8062 -4.0280 -4.9483 27 6 7.3033 -3.0001 -4.1674 28 6 6.4523 -2.2583 -3.3681 29 6 5.1014 -2.5402 -3.3461 30 1 -1.0498 -0.0005 -0.0003 31 1 3.0092 0.3747 0.9573 32 1 3.0090 0.6429 -0.8024 33 1 4.9665 -1.1892 0.9273 34 1 5.0527 -2.4410 -0.3351 35 1 6.2114 -0.4524 -0.9736 36 1 1.8966 -1.4668 -1.8448 37 1 1.9485 -3.7009 -0.8897 38 1 3.6633 -3.7760 -1.3610 39 1 0.1706 -4.1833 -2.7628 40 1 0.1546 -5.9406 -5.8498 41 1 -0.9383 -4.8715 -4.9383 42 1 -1.9570 -3.6256 -9.3564 43 1 5.0699 -5.1211 -5.5440 44 1 7.4750 -4.6037 -5.5709 45 1 8.3603 -2.7790 -4.1782 46 1 6.8456 -1.4566 -2.7607 47 1 4.4379 -1.9608 -2.7213 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883123455.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:17 Heat of formation + Delta-G solvation = 87.664087 kcal Electronic energy + Delta-G solvation = -29051.590435 eV Core-core repulsion = 25201.624064 eV Total energy + Delta-G solvation = -3849.966371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.10723 -39.65498 -39.02639 -36.49006 -35.72115 -34.68294 -33.88669 -32.31247 -31.77104 -31.44773 -30.13502 -28.95793 -27.38794 -25.63856 -24.92812 -23.31290 -22.91352 -21.52748 -21.25170 -20.58588 -19.13462 -19.04040 -18.09039 -17.93969 -17.39185 -16.68270 -16.32855 -16.26184 -15.88596 -15.63692 -15.53175 -15.35250 -14.90910 -14.61296 -14.50160 -14.29796 -14.13611 -14.09659 -13.88120 -13.66118 -13.52850 -13.40076 -13.12894 -12.81931 -12.57865 -12.50020 -12.14377 -12.06936 -11.90020 -11.83415 -11.71369 -11.25562 -11.06659 -10.98019 -10.91220 -10.55728 -10.49755 -9.65749 -9.52793 -9.21811 -8.97736 -8.41545 -6.52507 0.31158 0.69790 1.17850 1.30809 1.34651 1.44490 1.85106 1.89983 1.94494 1.98316 2.24514 2.90129 3.10800 3.37505 3.53310 3.63527 3.71777 3.87065 4.16462 4.19972 4.25753 4.31016 4.32575 4.35982 4.50456 4.52540 4.60872 4.65855 4.70457 4.77272 4.81204 4.90017 4.94789 4.97861 5.05322 5.10607 5.20028 5.22635 5.25527 5.28343 5.46760 5.61107 5.79079 5.91824 5.95530 5.97867 6.20143 6.32455 6.38976 6.43887 6.53608 6.75665 6.98781 7.10640 7.20994 8.75994 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009221 B = 0.003729 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3035.680114 B = 7507.175856 C = 9788.493808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.213 4.213 3 C -0.005 4.005 4 C 0.092 3.908 5 H 0.068 0.932 6 C 0.089 3.911 7 O -0.570 6.570 8 N -0.678 5.678 9 C 0.153 3.847 10 C -0.240 4.240 11 C 0.050 3.950 12 N -0.350 5.350 13 C 0.239 3.761 14 C -0.548 4.548 15 H 0.021 0.979 16 C 0.015 3.985 17 N -0.942 5.942 18 Si 0.958 3.042 19 H -0.250 1.250 20 H -0.279 1.279 21 H -0.242 1.242 22 N -0.328 5.328 23 C 0.096 3.904 24 C -0.039 4.039 25 C -0.123 4.123 26 C -0.136 4.136 27 C -0.117 4.117 28 C -0.120 4.120 29 C -0.106 4.106 30 H 0.233 0.767 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.387 0.613 36 H 0.338 0.662 37 H 0.050 0.950 38 H 0.081 0.919 39 H 0.200 0.800 40 H 0.041 0.959 41 H 0.078 0.922 42 H 0.273 0.727 43 H 0.096 0.904 44 H 0.137 0.863 45 H 0.152 0.848 46 H 0.156 0.844 47 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.305 2.495 24.376 27.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.213 4.213 3 C -0.042 4.042 4 C -0.018 4.018 5 H 0.086 0.914 6 C 0.010 3.990 7 O -0.378 6.378 8 N -0.310 5.310 9 C 0.024 3.976 10 C -0.252 4.252 11 C -0.098 4.098 12 N -0.129 5.129 13 C 0.120 3.880 14 C -0.586 4.586 15 H 0.040 0.960 16 C -0.184 4.184 17 N -0.580 5.580 18 Si 0.778 3.222 19 H -0.174 1.174 20 H -0.204 1.204 21 H -0.165 1.165 22 N -0.151 5.151 23 C -0.067 4.067 24 C -0.041 4.041 25 C -0.143 4.143 26 C -0.154 4.154 27 C -0.135 4.135 28 C -0.138 4.138 29 C -0.125 4.125 30 H 0.250 0.750 31 H 0.129 0.871 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.236 0.764 36 H 0.157 0.843 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.217 0.783 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.114 0.886 44 H 0.154 0.846 45 H 0.169 0.831 46 H 0.173 0.827 47 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 13.045 2.273 22.493 26.101 hybrid contribution -1.461 -0.574 0.179 1.580 sum 11.584 1.699 22.671 25.516 Atomic orbital electron populations 1.25608 0.96977 0.99941 1.00984 1.23747 0.95580 1.01262 1.00714 1.18868 0.83271 0.97636 1.04429 1.21701 0.95451 0.94759 0.89859 0.91402 1.22180 0.91444 0.92390 0.92937 1.86565 1.26144 1.61233 1.63810 1.60454 1.38288 1.06524 1.25741 1.20057 1.00607 0.87578 0.89342 1.20057 0.91717 1.15571 0.97890 1.22900 1.00447 1.00602 0.85861 1.48746 1.07064 1.49440 1.07700 1.19811 0.82587 0.95319 0.90327 1.21200 1.15612 1.14426 1.07350 0.96037 1.25949 0.99161 0.99584 0.93713 1.70057 1.34547 1.40575 1.12870 0.85589 0.78948 0.78756 0.78888 1.17449 1.20410 1.16539 1.77628 0.89713 1.24222 1.23531 1.21141 0.94466 0.99725 0.91413 1.18159 0.87575 0.98563 0.99811 1.21279 0.94753 0.99871 0.98384 1.21243 0.94003 0.99425 1.00742 1.21622 1.01213 0.94847 0.95849 1.21454 0.92496 1.00126 0.99698 1.22565 0.97688 0.94907 0.97371 0.74998 0.87140 0.89052 0.91141 0.93498 0.76387 0.84317 0.93198 0.90116 0.78289 0.94110 0.90404 0.91806 0.88556 0.84554 0.83072 0.82681 0.80020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.31 19.25 74.32 1.43 -2.88 16 2 C -0.21 -4.35 12.20 31.12 0.38 -3.97 16 3 C -0.01 -0.09 5.03 28.79 0.14 0.06 16 4 C 0.09 1.45 2.41 44.92 0.11 1.56 16 5 H 0.07 0.96 7.80 -2.38 -0.02 0.94 16 6 C 0.09 1.05 6.35 71.98 0.46 1.51 16 7 O -0.57 -7.52 11.10 -148.98 -1.65 -9.18 16 8 N -0.68 -15.37 3.90 -495.56 -1.93 -17.31 16 9 C 0.15 3.72 4.89 85.56 0.42 4.14 16 10 C -0.24 -8.27 5.58 -19.95 -0.11 -8.39 16 11 C 0.05 1.81 11.33 83.47 0.95 2.76 16 12 N -0.35 -16.26 3.67 -351.90 -1.29 -17.55 16 13 C 0.24 11.60 5.33 85.64 0.46 12.05 16 14 C -0.55 -33.00 9.78 25.60 0.25 -32.75 16 15 H 0.02 1.52 8.06 -2.91 -0.02 1.50 16 16 C 0.01 0.86 5.47 84.66 0.46 1.33 16 17 N -0.94 -59.75 13.96 21.45 0.30 -59.45 16 18 Si 0.96 41.93 27.47 68.60 1.88 43.82 16 19 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.24 -9.65 6.54 99.48 0.65 -9.00 16 22 N -0.33 -16.43 12.40 -48.16 -0.60 -17.03 16 23 C 0.10 4.01 6.74 42.53 0.29 4.30 16 24 C -0.04 -1.41 5.80 -20.04 -0.12 -1.53 16 25 C -0.12 -4.27 9.75 22.48 0.22 -4.05 16 26 C -0.14 -3.59 10.03 22.24 0.22 -3.37 16 27 C -0.12 -2.47 10.04 22.31 0.22 -2.25 16 28 C -0.12 -2.58 9.94 22.24 0.22 -2.36 16 29 C -0.11 -3.04 8.60 22.48 0.19 -2.85 16 30 H 0.23 3.28 7.80 -4.43 -0.03 3.24 16 31 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.09 1.78 7.73 -2.39 -0.02 1.76 16 33 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.05 0.60 7.35 -2.39 -0.02 0.58 16 35 H 0.39 2.01 8.29 -74.05 -0.61 1.40 16 36 H 0.34 8.93 7.36 -89.70 -0.66 8.27 16 37 H 0.05 1.03 8.05 -2.38 -0.02 1.01 16 38 H 0.08 1.87 6.99 -2.39 -0.02 1.85 16 39 H 0.20 5.43 8.06 -2.91 -0.02 5.40 16 40 H 0.04 1.96 7.20 -2.39 -0.02 1.94 16 41 H 0.08 3.24 7.50 -2.39 -0.02 3.22 16 42 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 43 H 0.10 3.66 8.06 -2.91 -0.02 3.63 16 44 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 45 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 46 H 0.16 2.10 6.83 -2.91 -0.02 2.08 16 47 H 0.18 4.99 3.06 -2.91 -0.01 4.98 16 Total: -1.00 -82.17 392.63 2.58 -79.59 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: -0.33 Total: 33.82 kcal Atomic # 6 Polarization: -42.90 SS G_CDS: 6.19 Total: -36.71 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -3.52 Total: -111.33 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -1.65 Total: -9.18 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.88 Total: 43.82 kcal Total: -82.17 2.58 -79.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883123455.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.250 kcal (2) G-P(sol) polarization free energy of solvation -82.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds