Wall clock time and date at job start Tue Mar 31 2020 22:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35906 * 116.99563 * 2 1 4 4 C 1.38745 * 120.05769 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94745 * 179.97438 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50693 * 120.02851 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47656 * 265.00820 * 9 8 7 11 11 C 1.53002 * 109.46934 * 300.00099 * 10 9 8 12 12 C 1.52997 * 109.47221 * 59.99875 * 10 9 8 13 13 O 1.42896 * 109.47319 * 65.00164 * 12 10 9 14 14 N 1.46896 * 109.47259 * 179.97438 * 10 9 8 15 15 C 1.46902 * 110.99949 * 179.97438 * 14 10 9 16 16 C 1.52998 * 109.47096 * 180.02562 * 15 14 10 17 17 C 1.53005 * 109.47383 * 179.97438 * 16 15 14 18 18 S 1.80996 * 109.47404 * 179.97438 * 17 16 15 19 19 C 1.76205 * 100.00061 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99678 * 0.02562 * 19 18 17 21 21 C 1.38790 * 119.99890 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00524 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99964 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47020 * 59.99979 * 23 21 19 25 25 H 1.48504 * 109.47286 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47208 * 300.00281 * 23 21 19 27 27 H 1.09003 * 109.46765 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47374 * 299.99895 * 1 2 3 29 29 H 1.08999 * 109.47150 * 60.00201 * 1 2 3 30 30 H 1.08002 * 120.02960 * 359.97438 * 4 3 2 31 31 H 1.07997 * 119.97891 * 180.29661 * 5 4 3 32 32 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 33 33 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 34 34 H 1.09009 * 109.47165 * 25.01069 * 9 8 7 35 35 H 1.09004 * 109.47119 * 145.00207 * 9 8 7 36 36 H 1.08997 * 109.47159 * 59.99450 * 11 10 9 37 37 H 1.09004 * 109.47170 * 180.02562 * 11 10 9 38 38 H 1.09004 * 109.46636 * 299.99875 * 11 10 9 39 39 H 1.09002 * 109.47344 * 185.00437 * 12 10 9 40 40 H 1.09009 * 109.47141 * 304.99858 * 12 10 9 41 41 H 0.96700 * 114.00184 * 180.02562 * 13 12 10 42 42 H 1.00896 * 111.00312 * 303.94911 * 14 10 9 43 43 H 1.09006 * 109.46817 * 299.99321 * 15 14 10 44 44 H 1.08999 * 109.47455 * 59.99748 * 15 14 10 45 45 H 1.09005 * 109.47040 * 299.99346 * 16 15 14 46 46 H 1.09000 * 109.47825 * 60.00079 * 16 15 14 47 47 H 1.09005 * 109.46505 * 299.99681 * 17 16 15 48 48 H 1.08999 * 109.47305 * 59.99413 * 17 16 15 49 49 H 0.96998 * 120.00089 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9207 3.6048 0.0011 6 6 3.3018 3.6758 0.0005 7 6 4.0559 2.5172 -0.0011 8 6 3.4311 1.2849 -0.0011 9 6 4.2537 0.0223 -0.0034 10 6 4.4247 -0.4725 -1.4410 11 6 3.0500 -0.7583 -2.0489 12 6 5.1351 0.6005 -2.2686 13 8 6.4623 0.7843 -1.7717 14 7 5.2271 -1.7029 -1.4433 15 6 5.4119 -2.2084 -2.8101 16 6 6.2498 -3.4880 -2.7717 17 6 6.4418 -4.0149 -4.1953 18 16 7.4337 -5.5281 -4.1500 19 6 7.4954 -5.9052 -5.8701 20 1 6.9999 -5.2618 -6.5821 21 6 8.1816 -7.0285 -6.3101 22 7 8.7859 -7.8125 -5.4424 23 14 8.2476 -7.4279 -8.1337 24 1 8.8911 -6.3058 -8.8632 25 1 9.0353 -8.6698 -8.3403 26 1 6.8683 -7.6260 -8.6473 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2128 2.3203 0.0005 31 1 1.3339 4.5114 0.0063 32 1 3.7920 4.6382 0.0005 33 1 5.1343 2.5754 -0.0019 34 1 5.2331 0.2259 0.4297 35 1 3.7476 -0.7422 0.5862 36 1 2.4550 0.1549 -2.0472 37 1 3.1719 -1.1112 -3.0730 38 1 2.5440 -1.5228 -1.4593 39 1 5.1779 0.2861 -3.3114 40 1 4.5861 1.5393 -2.1944 41 1 6.9724 1.4521 -2.2501 42 1 6.1158 -1.5560 -0.9886 43 1 4.4392 -2.4248 -3.2521 44 1 5.9242 -1.4560 -3.4097 45 1 7.2226 -3.2721 -2.3297 46 1 5.7372 -4.2403 -2.1724 47 1 5.4689 -4.2308 -4.6370 48 1 6.9542 -3.2628 -4.7952 49 1 9.2658 -8.5974 -5.7500 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931603119.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:03 Heat of formation + Delta-G solvation = -75.352627 kcal Electronic energy + Delta-G solvation = -27304.447476 eV Core-core repulsion = 23550.563370 eV Total energy + Delta-G solvation = -3753.884106 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.166 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.86047 -38.87027 -37.58186 -35.80239 -34.29394 -32.39240 -31.95362 -30.43942 -29.38911 -27.85980 -26.94050 -26.12354 -25.63934 -24.50764 -22.36565 -21.96629 -20.85317 -19.20983 -18.15628 -17.48898 -17.39775 -16.59212 -16.44055 -15.95061 -15.72132 -15.48622 -14.97279 -14.76517 -14.63661 -14.42493 -14.13535 -13.81276 -13.63829 -13.20501 -13.03766 -12.78147 -12.65247 -12.36006 -12.26544 -12.08195 -11.94699 -11.80241 -11.55762 -11.35662 -11.27098 -11.07125 -11.00848 -10.98588 -10.86526 -10.68041 -10.56885 -10.26719 -10.08072 -9.46935 -9.09921 -9.00714 -8.41082 -8.23435 -8.22440 -6.46428 -6.17815 -3.87463 1.01396 1.14685 3.01035 3.24723 3.25932 3.30484 3.43005 3.62162 3.94719 4.27037 4.35410 4.50992 4.53127 4.73426 4.78064 4.82712 4.85493 4.88773 5.06780 5.10500 5.17647 5.18928 5.23022 5.29969 5.34622 5.40626 5.45561 5.54104 5.60092 5.65535 5.73494 5.79531 5.82728 5.95920 6.02520 6.05426 6.12166 6.18338 6.22295 6.30585 6.36132 6.44318 6.51145 6.71741 6.85123 7.11369 7.21612 7.41514 7.60173 7.64592 8.41060 9.28017 10.90281 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022815 B = 0.001962 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.965198 B =14267.466847 C =14735.824528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.304 6.304 3 C 0.133 3.867 4 C -0.211 4.211 5 C -0.087 4.087 6 C -0.160 4.160 7 C -0.077 4.077 8 C -0.105 4.105 9 C -0.058 4.058 10 C 0.129 3.871 11 C -0.134 4.134 12 C 0.041 3.959 13 O -0.568 6.568 14 N -0.672 5.672 15 C 0.062 3.938 16 C -0.094 4.094 17 C -0.110 4.110 18 S -0.132 6.132 19 C -0.516 4.516 20 H 0.071 0.929 21 C 0.070 3.930 22 N -0.870 5.870 23 Si 0.918 3.082 24 H -0.275 1.275 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.101 0.899 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.130 0.870 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.045 0.955 40 H 0.049 0.951 41 H 0.377 0.623 42 H 0.348 0.652 43 H 0.070 0.930 44 H 0.028 0.972 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.841 24.924 12.212 31.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.217 6.217 3 C 0.088 3.912 4 C -0.230 4.230 5 C -0.105 4.105 6 C -0.178 4.178 7 C -0.095 4.095 8 C -0.106 4.106 9 C -0.096 4.096 10 C 0.037 3.963 11 C -0.192 4.192 12 C -0.038 4.038 13 O -0.372 6.372 14 N -0.303 5.303 15 C -0.069 4.069 16 C -0.133 4.133 17 C -0.260 4.260 18 S 0.096 5.904 19 C -0.664 4.664 20 H 0.089 0.911 21 C -0.139 4.139 22 N -0.505 5.505 23 Si 0.744 3.256 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.200 1.200 27 H 0.119 0.881 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.144 0.856 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.148 0.852 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.224 0.776 42 H 0.167 0.833 43 H 0.088 0.912 44 H 0.046 0.954 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.077 0.923 48 H 0.075 0.925 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.927 23.097 13.665 31.207 hybrid contribution 0.017 1.761 -3.089 3.556 sum -15.910 24.857 10.576 31.351 Atomic orbital electron populations 1.23061 0.78806 1.04097 1.01049 1.86232 1.20882 1.26326 1.88272 1.18836 0.91835 0.84344 0.96224 1.21224 0.99956 0.92450 1.09353 1.20907 0.94701 0.96891 0.98032 1.21049 0.93923 0.98379 1.04465 1.20996 1.00116 0.90989 0.97441 1.19241 0.90458 0.95950 1.04954 1.20384 0.99290 0.93748 0.96131 1.20832 0.93674 0.87610 0.94175 1.21901 0.94672 1.02130 1.00477 1.23060 0.83754 0.99457 0.97554 1.86407 1.25904 1.63681 1.61255 1.60619 1.22672 1.28520 1.18468 1.22062 0.99790 0.96009 0.89004 1.21224 0.99707 0.96118 0.96236 1.23214 1.02608 1.01945 0.98199 1.84635 1.66885 1.25821 1.13070 1.22653 1.39130 1.13460 0.91165 0.91108 1.25012 0.94762 0.95248 0.98831 1.70017 1.32172 1.14345 1.34007 0.86236 0.78326 0.77800 0.83215 1.19997 1.20834 1.19970 0.88101 0.92878 0.92802 0.85639 0.86102 0.86110 0.85238 0.90490 0.89740 0.92580 0.92951 0.90458 0.93673 0.93293 0.77630 0.83323 0.91156 0.95384 0.91869 0.90864 0.92272 0.92521 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.30 -2.82 7.10 -19.44 -0.14 -2.96 16 3 C 0.13 1.26 5.20 -39.22 -0.20 1.05 16 4 C -0.21 -1.69 9.04 -39.44 -0.36 -2.05 16 5 C -0.09 -0.65 10.04 -39.60 -0.40 -1.05 16 6 C -0.16 -1.23 10.04 -39.56 -0.40 -1.62 16 7 C -0.08 -0.67 8.15 -39.61 -0.32 -0.99 16 8 C -0.10 -1.03 4.02 -104.48 -0.42 -1.45 16 9 C -0.06 -0.62 4.42 -27.89 -0.12 -0.74 16 10 C 0.13 1.44 0.56 -131.61 -0.07 1.37 16 11 C -0.13 -1.50 6.74 37.16 0.25 -1.25 16 12 C 0.04 0.43 5.06 37.16 0.19 0.62 16 13 O -0.57 -5.63 12.51 -35.23 -0.44 -6.08 16 14 N -0.67 -8.82 6.04 -99.97 -0.60 -9.42 16 15 C 0.06 0.89 4.90 -3.82 -0.02 0.88 16 16 C -0.09 -1.64 5.48 -26.73 -0.15 -1.79 16 17 C -0.11 -2.33 5.67 37.16 0.21 -2.12 16 18 S -0.13 -3.58 21.44 -107.50 -2.30 -5.88 16 19 C -0.52 -15.14 9.50 30.94 0.29 -14.84 16 20 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 21 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 22 N -0.87 -26.46 13.22 55.49 0.73 -25.73 16 23 Si 0.92 21.89 29.55 -169.99 -5.02 16.87 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 29 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 30 H 0.13 0.76 6.30 -52.49 -0.33 0.43 16 31 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 32 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 33 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.08 0.83 7.73 -51.92 -0.40 0.43 16 35 H 0.08 0.99 7.69 -51.93 -0.40 0.59 16 36 H 0.06 0.59 5.67 -51.93 -0.29 0.30 16 37 H 0.05 0.60 6.40 -51.93 -0.33 0.27 16 38 H 0.08 0.92 7.44 -51.93 -0.39 0.53 16 39 H 0.05 0.50 6.68 -51.93 -0.35 0.16 16 40 H 0.05 0.47 6.08 -51.92 -0.32 0.16 16 41 H 0.38 2.35 9.12 45.56 0.42 2.77 16 42 H 0.35 4.67 8.12 -39.29 -0.32 4.35 16 43 H 0.07 1.02 6.30 -51.93 -0.33 0.70 16 44 H 0.03 0.41 6.42 -51.93 -0.33 0.08 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 47 H 0.06 1.24 8.14 -51.91 -0.42 0.81 16 48 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 49 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 395.60 15.07 5.96 5.96 Total: -1.00 -33.16 395.60 -9.53 -42.69 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -7.09 Total: 5.45 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -0.62 Total: -20.90 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.13 Total: -35.15 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.58 Total: -9.04 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -2.30 Total: -5.88 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.16 -9.53 -42.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931603119.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.660 kcal (2) G-P(sol) polarization free energy of solvation -33.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds